Wall clock time and date at job start Wed Apr 1 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 117.00066 * 2 1 4 4 O 1.20829 * 119.99608 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00131 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47102 * 179.97438 * 5 3 2 7 7 N 1.46910 * 109.47325 * 180.02562 * 6 5 3 8 8 C 1.46901 * 110.99947 * 66.04066 * 7 6 5 9 9 C 1.53239 * 109.33841 * 172.74663 * 8 7 6 10 10 N 1.47084 * 108.51964 * 53.83174 * 9 8 7 11 11 C 1.34777 * 120.88184 * 128.78948 * 10 9 8 12 12 O 1.21280 * 120.00228 * 174.45246 * 11 10 9 13 13 C 1.50698 * 119.99739 * 354.45330 * 11 10 9 14 14 C 1.52999 * 109.47214 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47693 * 180.02562 * 14 13 11 16 16 C 1.52991 * 109.47309 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47158 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99948 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00004 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00292 * 0.02562 * 19 17 16 21 21 Si 1.86812 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46893 * 90.00090 * 21 19 17 23 23 H 1.48498 * 109.46923 * 210.00239 * 21 19 17 24 24 H 1.48497 * 109.46959 * 330.00458 * 21 19 17 25 25 C 1.47081 * 118.23759 * 308.81846 * 10 9 8 26 26 H 1.09002 * 109.62296 * 291.27480 * 25 10 9 27 27 C 1.52997 * 109.62634 * 170.89369 * 25 10 9 28 28 C 1.46901 * 110.99552 * 301.74406 * 7 6 5 29 29 H 1.09002 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47117 * 300.00192 * 1 2 3 31 31 H 1.08995 * 109.47229 * 60.00649 * 1 2 3 32 32 H 1.08997 * 109.47350 * 59.99465 * 5 3 2 33 33 H 1.09006 * 109.47137 * 299.99935 * 5 3 2 34 34 H 1.09001 * 109.47211 * 299.99535 * 6 5 3 35 35 H 1.08993 * 109.47508 * 60.00052 * 6 5 3 36 36 H 1.08999 * 109.49450 * 292.70953 * 8 7 6 37 37 H 1.09003 * 109.49281 * 52.76254 * 8 7 6 38 38 H 1.09000 * 109.62558 * 173.53932 * 9 8 7 39 39 H 1.08997 * 109.63100 * 294.12220 * 9 8 7 40 40 H 1.08996 * 109.47602 * 299.99963 * 13 11 10 41 41 H 1.08997 * 109.47175 * 59.99926 * 13 11 10 42 42 H 1.09009 * 109.47114 * 300.00263 * 14 13 11 43 43 H 1.08997 * 109.46875 * 60.00031 * 14 13 11 44 44 H 1.08998 * 109.46523 * 300.00434 * 15 14 13 45 45 H 1.09006 * 109.46583 * 59.99585 * 15 14 13 46 46 H 1.09009 * 109.47160 * 299.99924 * 16 15 14 47 47 H 1.08997 * 109.47731 * 59.99838 * 16 15 14 48 48 H 0.96997 * 119.99817 * 179.97438 * 20 19 17 49 49 H 1.09003 * 109.47269 * 68.29178 * 27 25 10 50 50 H 1.09004 * 109.46882 * 188.28738 * 27 25 10 51 51 H 1.08994 * 109.47393 * 308.29065 * 27 25 10 52 52 H 1.09000 * 109.49329 * 307.21164 * 28 7 6 53 53 H 1.08997 * 109.49576 * 67.29003 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4671 2.8191 -0.0023 8 6 6.0210 2.2903 -1.2559 9 6 7.5302 2.5529 -1.2945 10 7 8.1313 2.0049 -0.0691 11 6 9.1943 1.1785 -0.1297 12 8 9.7396 0.8160 0.8911 13 6 9.7051 0.7049 -1.4660 14 6 10.9098 -0.2144 -1.2548 15 6 11.4290 -0.6948 -2.6115 16 6 12.6331 -1.6146 -2.4002 17 6 13.1449 -2.0872 -3.7366 18 1 12.6595 -1.7642 -4.6456 19 6 14.2327 -2.9319 -3.7986 20 7 14.8236 -3.3257 -2.6916 21 14 14.8666 -3.5184 -5.4551 22 1 15.8901 -2.5673 -5.9584 23 1 15.4739 -4.8651 -5.3042 24 1 13.7397 -3.5888 -6.4196 25 6 7.5411 2.3820 1.2243 26 1 7.7290 3.4380 1.4184 27 6 8.1614 1.5364 2.3383 28 6 6.0315 2.1262 1.1637 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 3.9557 0.7809 -0.8907 33 1 3.9564 0.7806 0.8892 34 1 3.6101 3.2360 -0.8911 35 1 3.6107 3.2364 0.8888 36 1 5.8369 1.2174 -1.3110 37 1 5.5436 2.7851 -2.1018 38 1 7.9649 2.0634 -2.1661 39 1 7.7140 3.6261 -1.3441 40 1 8.9168 0.1583 -1.9835 41 1 10.0051 1.5643 -2.0656 42 1 11.6981 0.3327 -0.7375 43 1 10.6102 -1.0738 -0.6550 44 1 10.6409 -1.2416 -3.1291 45 1 11.7286 0.1649 -3.2109 46 1 13.4214 -1.0680 -1.8823 47 1 12.3331 -2.4742 -1.8010 48 1 15.5887 -3.9203 -2.7353 49 1 9.2075 1.8148 2.4661 50 1 7.6226 1.7109 3.2697 51 1 8.0960 0.4813 2.0729 52 1 5.5621 2.5023 2.0726 53 1 5.8472 1.0556 1.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588667823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:00 Heat of formation + Delta-G solvation = -143.385216 kcal Electronic energy + Delta-G solvation = -29877.922277 eV Core-core repulsion = 25748.742369 eV Total energy + Delta-G solvation = -4129.179908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76941 -41.39873 -39.40525 -37.65499 -36.73088 -36.07680 -34.79970 -33.77106 -32.28016 -31.25909 -29.38587 -28.46215 -27.40795 -27.02102 -24.60161 -24.49491 -23.00840 -22.41511 -21.65849 -21.18867 -19.64209 -18.80900 -18.40982 -17.81592 -17.67459 -17.66313 -17.23703 -16.75385 -16.49109 -16.37784 -15.86453 -15.73562 -15.39241 -15.12572 -14.77798 -14.58530 -14.49647 -14.20608 -13.92177 -13.69686 -13.61565 -13.51895 -13.35571 -13.21167 -13.08579 -12.88874 -12.80544 -12.78917 -12.39206 -12.31945 -12.27127 -12.14073 -12.07114 -11.94602 -11.87423 -11.73351 -11.62416 -11.35803 -11.30234 -11.05575 -10.53980 -10.09546 -9.74587 -9.28699 -8.17627 -6.29753 1.09393 1.41039 1.43267 1.54263 1.68032 1.72076 1.98004 2.42671 2.82684 3.15034 3.56587 3.68628 3.80056 3.84816 3.95744 3.98606 4.06464 4.15070 4.16068 4.24950 4.25775 4.29812 4.29922 4.38833 4.44911 4.62485 4.63939 4.68409 4.69365 4.73415 4.75059 4.80732 4.85444 4.87546 4.91352 5.00634 5.07092 5.18881 5.22237 5.33485 5.34063 5.37054 5.40460 5.58255 5.67172 5.79787 5.89423 5.92047 5.98641 6.26557 6.47225 6.64464 6.88814 7.27625 7.39840 8.94479 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.001841 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.067559 B =15208.104926 C =16346.666350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.467 3.533 4 O -0.535 6.535 5 C -0.150 4.150 6 C 0.077 3.923 7 N -0.532 5.532 8 C 0.033 3.967 9 C 0.105 3.895 10 N -0.614 5.614 11 C 0.511 3.489 12 O -0.572 6.572 13 C -0.129 4.129 14 C -0.093 4.093 15 C -0.095 4.095 16 C 0.018 3.982 17 C -0.541 4.541 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C 0.147 3.853 26 H 0.080 0.920 27 C -0.131 4.131 28 C 0.045 3.955 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.060 0.940 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.262 0.738 49 H 0.054 0.946 50 H 0.065 0.935 51 H 0.042 0.958 52 H 0.100 0.900 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.641 14.022 4.753 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.311 3.689 4 O -0.425 6.425 5 C -0.190 4.190 6 C -0.052 4.052 7 N -0.255 5.255 8 C -0.096 4.096 9 C -0.017 4.017 10 N -0.348 5.348 11 C 0.301 3.699 12 O -0.451 6.451 13 C -0.168 4.168 14 C -0.131 4.131 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C 0.044 3.956 26 H 0.098 0.902 27 C -0.189 4.189 28 C -0.083 4.083 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.002 0.998 47 H 0.003 0.997 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.061 0.939 52 H 0.119 0.881 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -30.321 14.527 5.378 34.049 hybrid contribution 0.348 -1.443 -0.312 1.516 sum -29.974 13.085 5.066 33.095 Atomic orbital electron populations 1.23523 0.74858 1.05553 1.02586 1.86527 1.25047 1.33441 1.83685 1.24033 0.92642 0.81014 0.71193 1.90676 1.68035 1.37094 1.46695 1.22253 0.86780 1.02812 1.07116 1.22024 0.86310 0.92024 1.04798 1.62232 1.05038 1.55609 1.02621 1.22677 0.94754 0.99167 0.92968 1.22112 0.92528 1.00514 0.86507 1.48369 1.30741 1.47333 1.08379 1.21118 0.79397 0.77607 0.91819 1.90744 1.58568 1.58600 1.37209 1.21716 0.99055 1.01503 0.94541 1.21223 0.96571 0.98200 0.97126 1.21442 0.97275 0.98686 0.95851 1.19059 0.93511 0.93824 0.95482 1.21758 1.13807 1.28354 0.93987 0.91541 1.26093 0.97101 0.96526 1.00720 1.70133 1.22662 1.35564 1.29426 0.85389 0.78749 0.77427 0.79116 1.19747 1.21001 1.18276 1.21341 0.92059 0.99313 0.82882 0.90204 1.21985 1.00710 0.99203 0.96953 1.22602 0.93577 0.97213 0.94931 0.85542 0.91890 0.91817 0.86339 0.86712 0.89232 0.89807 0.93546 0.87090 0.87243 0.89639 0.86769 0.86782 0.93996 0.93954 0.92113 0.92111 0.99777 0.99734 0.92900 0.92740 0.91593 0.93925 0.88135 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.18 10.57 -51.46 -0.54 -5.73 16 3 C 0.47 6.74 7.96 71.23 0.57 7.31 16 4 O -0.54 -10.52 15.73 21.95 0.35 -10.17 16 5 C -0.15 -1.40 5.12 29.84 0.15 -1.25 16 6 C 0.08 0.76 4.64 86.30 0.40 1.16 16 7 N -0.53 -5.75 4.83 -895.25 -4.32 -10.07 16 8 C 0.03 0.30 5.16 86.38 0.45 0.74 16 9 C 0.11 1.22 6.51 86.35 0.56 1.79 16 10 N -0.61 -11.63 3.01 -794.10 -2.39 -14.02 16 11 C 0.51 13.45 7.48 87.66 0.66 14.11 16 12 O -0.57 -19.99 11.70 -3.03 -0.04 -20.03 16 13 C -0.13 -3.10 4.06 29.85 0.12 -2.98 16 14 C -0.09 -3.31 4.50 30.60 0.14 -3.17 16 15 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 16 C 0.02 1.01 4.97 29.85 0.15 1.16 16 17 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 19 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 20 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 21 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 C 0.15 2.61 3.65 44.96 0.16 2.77 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 C -0.13 -2.91 7.63 71.98 0.55 -2.36 16 28 C 0.05 0.57 4.23 86.38 0.37 0.93 16 29 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.12 0.88 6.71 -2.39 -0.02 0.86 16 33 H 0.11 0.96 6.54 -2.38 -0.02 0.94 16 34 H 0.09 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.05 0.43 6.83 -2.39 -0.02 0.41 16 37 H 0.11 0.62 8.04 -2.39 -0.02 0.60 16 38 H 0.11 0.98 6.00 -2.39 -0.01 0.96 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 2.18 7.89 -2.39 -0.02 2.16 16 41 H 0.11 2.21 7.78 -2.39 -0.02 2.19 16 42 H 0.04 1.65 8.10 -2.38 -0.02 1.63 16 43 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 46 H -0.02 -0.98 8.14 -2.38 -0.02 -0.99 16 47 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.05 1.53 6.61 -2.39 -0.02 1.52 16 50 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.04 1.13 6.96 -2.39 -0.02 1.11 16 52 H 0.10 1.02 8.11 -2.39 -0.02 1.00 16 53 H 0.04 0.57 6.70 -2.39 -0.02 0.56 16 Total: -1.00 -78.51 414.12 2.55 -75.95 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.87 Total: 9.12 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 6.32 Total: -13.06 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -6.43 Total: -82.78 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.23 Total: -35.93 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -78.51 2.55 -75.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588667823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.433 kcal (2) G-P(sol) polarization free energy of solvation -78.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds