Wall clock time and date at job start Wed Apr 1 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00561 * 2 1 4 4 O 1.20829 * 119.99529 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00129 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46732 * 180.02562 * 5 3 2 7 7 N 1.46908 * 109.46936 * 179.97438 * 6 5 3 8 8 C 1.46894 * 110.99932 * 293.95552 * 7 6 5 9 9 C 1.53235 * 109.34173 * 187.25618 * 8 7 6 10 10 N 1.47081 * 108.51816 * 306.16751 * 9 8 7 11 11 C 1.34777 * 120.88228 * 231.16246 * 10 9 8 12 12 O 1.21286 * 119.99791 * 180.02562 * 11 10 9 13 13 C 1.50693 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.53002 * 109.46950 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47341 * 180.02562 * 14 13 11 16 16 C 1.52989 * 109.47531 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47449 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00012 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99719 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47130 * 90.00178 * 21 19 17 23 23 H 1.48501 * 109.47254 * 210.00268 * 21 19 17 24 24 H 1.48504 * 109.47168 * 330.00114 * 21 19 17 25 25 C 1.47086 * 118.23796 * 51.18621 * 10 9 8 26 26 C 1.46894 * 110.99613 * 58.25684 * 7 6 5 27 27 H 1.08997 * 109.49367 * 292.70105 * 26 7 6 28 28 C 1.52998 * 109.49654 * 52.78750 * 26 7 6 29 29 H 1.09003 * 109.46842 * 59.99706 * 1 2 3 30 30 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46729 * 300.00031 * 1 2 3 32 32 H 1.09001 * 109.47038 * 60.00544 * 5 3 2 33 33 H 1.08996 * 109.46855 * 300.00088 * 5 3 2 34 34 H 1.08997 * 109.47149 * 59.99949 * 6 5 3 35 35 H 1.08996 * 109.47443 * 299.99631 * 6 5 3 36 36 H 1.09004 * 109.49408 * 67.28971 * 8 7 6 37 37 H 1.09005 * 109.49423 * 307.21355 * 8 7 6 38 38 H 1.08998 * 109.63341 * 186.46272 * 9 8 7 39 39 H 1.08997 * 109.63256 * 65.87637 * 9 8 7 40 40 H 1.08995 * 109.47366 * 299.99609 * 13 11 10 41 41 H 1.09003 * 109.47058 * 60.00251 * 13 11 10 42 42 H 1.09001 * 109.47231 * 299.99464 * 14 13 11 43 43 H 1.09002 * 109.47510 * 59.99904 * 14 13 11 44 44 H 1.09001 * 109.46965 * 300.00323 * 15 14 13 45 45 H 1.09002 * 109.47025 * 59.99450 * 15 14 13 46 46 H 1.09001 * 109.47313 * 300.00175 * 16 15 14 47 47 H 1.09002 * 109.47362 * 59.99722 * 16 15 14 48 48 H 0.97002 * 119.99875 * 180.02562 * 20 19 17 49 49 H 1.08995 * 109.62590 * 68.52272 * 25 10 9 50 50 H 1.09001 * 109.62973 * 189.10591 * 25 10 9 51 51 H 1.08999 * 109.47174 * 179.86114 * 28 26 7 52 52 H 1.08996 * 109.47207 * 299.86091 * 28 26 7 53 53 H 1.09006 * 109.47059 * 59.86547 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7419 0.0002 7 7 5.4673 2.8187 0.0002 8 6 6.0221 2.2895 1.2532 9 6 7.5314 2.5520 1.2908 10 7 8.1314 2.0043 0.0647 11 6 9.1950 1.1786 0.1242 12 8 9.6774 0.7366 -0.8970 13 6 9.7847 0.8046 1.4596 14 6 10.9732 -0.1352 1.2470 15 6 11.5716 -0.5156 2.6028 16 6 12.7596 -1.4558 2.3903 17 6 13.3486 -1.8309 3.7258 18 1 12.9188 -1.4376 4.6352 19 6 14.4368 -2.6754 3.7866 20 7 14.9511 -3.0023 4.9520 21 14 15.1806 -3.3552 2.2138 22 1 16.2374 -2.4325 1.7269 23 1 15.7741 -4.6895 2.4832 24 1 14.1216 -3.4839 1.1807 25 6 7.5404 2.3821 -1.2281 26 6 6.0307 2.1263 -1.1664 27 1 5.8465 1.0557 -1.0779 28 6 5.3708 2.6548 -2.4416 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9558 0.7808 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 3.6109 3.2354 0.8906 35 1 3.6103 3.2366 -0.8893 36 1 5.8380 1.2166 1.3080 37 1 5.5457 2.7844 2.0996 38 1 7.9667 2.0622 2.1618 39 1 7.7153 3.6252 1.3407 40 1 10.1215 1.7051 1.9731 41 1 9.0281 0.3034 2.0633 42 1 10.6368 -1.0359 0.7333 43 1 11.7296 0.3663 0.6434 44 1 11.9078 0.3848 3.1170 45 1 10.8149 -1.0172 3.2061 46 1 12.4230 -2.3562 1.8763 47 1 13.5164 -0.9546 1.7869 48 1 15.7169 -3.5961 4.9948 49 1 7.7252 3.4389 -1.4203 50 1 7.9816 1.7799 -2.0224 51 1 5.7909 2.1425 -3.3072 52 1 4.2971 2.4727 -2.3974 53 1 5.5545 3.7257 -2.5288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589844898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:38 Heat of formation + Delta-G solvation = -152.305323 kcal Electronic energy + Delta-G solvation = -29835.490287 eV Core-core repulsion = 25705.923574 eV Total energy + Delta-G solvation = -4129.566713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77056 -41.25951 -39.67471 -37.65767 -36.69881 -36.16459 -34.64056 -33.77913 -32.28453 -31.80344 -29.27707 -28.57418 -28.04295 -26.74320 -24.64893 -23.88314 -23.47140 -22.24273 -21.73163 -20.67868 -19.65231 -18.88852 -18.83064 -17.95206 -17.84607 -17.66309 -17.13762 -16.94747 -16.59351 -16.29517 -15.88778 -15.78228 -15.44516 -15.18373 -14.86924 -14.58314 -14.51040 -14.27556 -14.03280 -13.75387 -13.72031 -13.51422 -13.46936 -13.15804 -13.02110 -12.91215 -12.83919 -12.77968 -12.52854 -12.31698 -12.11499 -12.07070 -11.98987 -11.86812 -11.74870 -11.68839 -11.62051 -11.44237 -11.33357 -11.24699 -10.75216 -10.72050 -9.82056 -9.30749 -8.28904 -6.31702 1.08530 1.35198 1.36575 1.49342 1.62407 1.70737 1.96068 2.36447 2.79375 3.06549 3.53450 3.68291 3.75411 3.82120 3.90030 3.97269 4.02811 4.13530 4.14841 4.20468 4.25277 4.28063 4.29702 4.36896 4.46023 4.54147 4.64442 4.66421 4.68336 4.71060 4.76550 4.78503 4.80024 4.87371 4.92347 4.94187 5.05302 5.08112 5.15220 5.21106 5.28970 5.30731 5.34820 5.50093 5.61644 5.67030 5.69695 5.93511 6.00360 6.30470 6.39690 6.63753 6.76250 7.17593 7.33088 8.87559 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.001822 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.229848 B =15363.863330 C =16169.814511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.467 3.533 4 O -0.534 6.534 5 C -0.151 4.151 6 C 0.073 3.927 7 N -0.526 5.526 8 C 0.033 3.967 9 C 0.105 3.895 10 N -0.615 5.615 11 C 0.513 3.487 12 O -0.587 6.587 13 C -0.130 4.130 14 C -0.097 4.097 15 C -0.093 4.093 16 C -0.017 4.017 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.253 1.253 25 C 0.119 3.881 26 C 0.069 3.931 27 H 0.046 0.954 28 C -0.146 4.146 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.013 0.987 47 H 0.012 0.988 48 H 0.266 0.734 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.066 0.934 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.510 13.671 -12.761 36.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.311 3.689 4 O -0.424 6.424 5 C -0.190 4.190 6 C -0.056 4.056 7 N -0.250 5.250 8 C -0.096 4.096 9 C -0.017 4.017 10 N -0.348 5.348 11 C 0.303 3.697 12 O -0.467 6.467 13 C -0.169 4.169 14 C -0.135 4.135 15 C -0.131 4.131 16 C -0.055 4.055 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.176 1.176 25 C -0.004 4.004 26 C -0.040 4.040 27 H 0.064 0.936 28 C -0.203 4.203 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.087 0.913 52 H 0.085 0.915 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -31.212 14.136 -13.242 36.734 hybrid contribution 0.260 -1.381 -0.234 1.425 sum -30.952 12.755 -13.476 36.088 Atomic orbital electron populations 1.23526 0.74837 1.05557 1.02599 1.86526 1.25057 1.33435 1.83684 1.24008 0.92585 0.81040 0.71239 1.90676 1.67998 1.37057 1.46637 1.22254 0.86872 1.02894 1.06994 1.22079 0.86593 0.92008 1.04879 1.62282 1.04944 1.55547 1.02218 1.22671 0.94779 0.99126 0.92985 1.22130 0.92469 1.00665 0.86410 1.48316 1.30657 1.47144 1.08716 1.21201 0.79428 0.77189 0.91904 1.90675 1.62071 1.55559 1.38407 1.21704 0.98883 1.02242 0.94060 1.21281 0.96604 0.98678 0.96922 1.21334 0.96886 0.98832 0.96015 1.19579 0.95302 0.95728 0.94882 1.21549 1.13771 1.27939 0.93507 0.94357 1.25982 0.97283 0.96505 0.99516 1.70060 1.25114 1.37466 1.26440 0.85710 0.79214 0.77914 0.80140 1.19286 1.20741 1.17640 1.21731 0.91911 1.01068 0.85659 1.21994 0.93573 0.96427 0.92007 0.93633 1.21873 1.00680 1.02521 0.95272 0.91849 0.85542 0.91832 0.86876 0.86412 0.89327 0.89370 0.93678 0.87003 0.87224 0.89451 0.86675 0.86605 0.93137 0.93115 0.92362 0.92332 0.96850 0.96985 0.92546 0.90332 0.90615 0.91348 0.91487 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.44 16 2 O -0.37 -5.11 10.56 -51.42 -0.54 -5.65 16 3 C 0.47 6.66 7.96 71.24 0.57 7.23 16 4 O -0.53 -10.33 15.73 21.95 0.35 -9.98 16 5 C -0.15 -1.42 4.98 29.85 0.15 -1.27 16 6 C 0.07 0.72 4.08 86.30 0.35 1.07 16 7 N -0.53 -5.54 4.68 -870.04 -4.07 -9.61 16 8 C 0.03 0.29 5.16 86.38 0.45 0.73 16 9 C 0.11 1.16 6.50 86.35 0.56 1.72 16 10 N -0.62 -11.19 3.01 -817.93 -2.46 -13.65 16 11 C 0.51 12.96 7.71 87.65 0.68 13.64 16 12 O -0.59 -20.31 15.44 -3.05 -0.05 -20.35 16 13 C -0.13 -2.91 4.07 29.85 0.12 -2.79 16 14 C -0.10 -3.10 4.50 30.60 0.14 -2.96 16 15 C -0.09 -3.52 5.15 30.59 0.16 -3.36 16 16 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 17 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 18 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 19 C 0.00 0.23 5.47 84.65 0.46 0.69 16 20 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 21 Si 0.95 45.92 27.47 68.60 1.88 47.80 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 25 C 0.12 2.03 5.88 86.35 0.51 2.54 16 26 C 0.07 0.85 1.97 45.00 0.09 0.94 16 27 H 0.05 0.63 6.70 -2.39 -0.02 0.61 16 28 C -0.15 -1.45 8.61 71.98 0.62 -0.83 16 29 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 30 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.57 8.13 -2.38 -0.02 0.55 16 32 H 0.11 0.98 6.17 -2.39 -0.01 0.97 16 33 H 0.12 0.89 6.71 -2.39 -0.02 0.87 16 34 H 0.09 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.09 0.98 6.28 -2.39 -0.01 0.97 16 36 H 0.04 0.42 6.83 -2.38 -0.02 0.40 16 37 H 0.11 0.61 8.04 -2.38 -0.02 0.59 16 38 H 0.11 0.92 6.02 -2.39 -0.01 0.90 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.12 2.09 8.00 -2.39 -0.02 2.07 16 41 H 0.12 2.05 7.66 -2.39 -0.02 2.03 16 42 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 47 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 48 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.62 7.06 -2.39 -0.02 1.60 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.07 0.60 5.96 -2.39 -0.01 0.58 16 53 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -78.60 411.86 2.64 -75.96 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.82 Total: 8.25 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 6.41 Total: -12.75 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -6.23 Total: -83.27 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.25 Total: -35.99 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Total: -78.60 2.64 -75.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.346 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds