Wall clock time and date at job start Wed Apr 1 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45187 * 1 3 3 C 1.34229 * 117.00618 * 2 1 4 4 O 1.20826 * 119.99555 * 359.97438 * 3 2 1 5 5 C 1.50689 * 120.00614 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.47533 * 179.97438 * 5 3 2 7 7 N 1.46901 * 109.47254 * 179.97438 * 6 5 3 8 8 C 1.46897 * 111.00038 * 289.78182 * 7 6 5 9 9 C 1.53236 * 109.34040 * 172.74874 * 8 7 6 10 10 N 1.47079 * 108.52142 * 53.82740 * 9 8 7 11 11 C 1.34776 * 120.87804 * 128.81715 * 10 9 8 12 12 O 1.21286 * 119.99738 * 180.02562 * 11 10 9 13 13 C 1.50698 * 120.00235 * 0.02562 * 11 10 9 14 14 C 1.53005 * 109.46931 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46680 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47052 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47303 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99696 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99857 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00205 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47020 * 89.99996 * 21 19 17 23 23 H 1.48499 * 109.47251 * 209.99709 * 21 19 17 24 24 H 1.48503 * 109.47088 * 330.00137 * 21 19 17 25 25 C 1.47077 * 118.23810 * 309.09202 * 10 9 8 26 26 C 1.46894 * 110.99595 * 165.48306 * 7 6 5 27 27 H 1.09000 * 109.49994 * 67.26651 * 26 7 6 28 28 C 1.53002 * 109.49182 * 307.21162 * 26 7 6 29 29 H 1.09004 * 109.47490 * 300.00329 * 1 2 3 30 30 H 1.08999 * 109.47605 * 60.00130 * 1 2 3 31 31 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47412 * 59.99922 * 5 3 2 33 33 H 1.09004 * 109.47500 * 299.99881 * 5 3 2 34 34 H 1.09003 * 109.46645 * 59.99685 * 6 5 3 35 35 H 1.08995 * 109.46648 * 300.00614 * 6 5 3 36 36 H 1.09008 * 109.49257 * 52.78629 * 8 7 6 37 37 H 1.08997 * 109.51448 * 292.72324 * 8 7 6 38 38 H 1.09000 * 109.62923 * 294.12197 * 9 8 7 39 39 H 1.09002 * 109.63333 * 173.54106 * 9 8 7 40 40 H 1.08999 * 109.46914 * 299.99399 * 13 11 10 41 41 H 1.09000 * 109.47327 * 59.99828 * 13 11 10 42 42 H 1.08999 * 109.46857 * 299.99465 * 14 13 11 43 43 H 1.08995 * 109.47262 * 60.00294 * 14 13 11 44 44 H 1.08999 * 109.47021 * 299.99343 * 15 14 13 45 45 H 1.09000 * 109.47471 * 59.99925 * 15 14 13 46 46 H 1.09004 * 109.46606 * 300.00013 * 16 15 14 47 47 H 1.09000 * 109.47061 * 59.99653 * 16 15 14 48 48 H 0.96998 * 120.00389 * 180.02562 * 20 19 17 49 49 H 1.09008 * 109.62876 * 170.61543 * 25 10 9 50 50 H 1.09001 * 109.62864 * 291.19982 * 25 10 9 51 51 H 1.08996 * 109.47567 * 67.25709 * 28 26 7 52 52 H 1.09004 * 109.47131 * 187.25386 * 28 26 7 53 53 H 1.09001 * 109.47090 * 307.25123 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5662 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4671 2.8189 0.0010 8 6 6.0160 2.3839 1.2923 9 6 7.5432 2.3054 1.1940 10 7 8.0472 3.5989 0.7080 11 6 9.0328 4.2466 1.3604 12 8 9.4359 5.3126 0.9457 13 6 9.6338 3.6462 2.6050 14 6 10.7236 4.5751 3.1443 15 6 11.3343 3.9651 4.4076 16 6 12.4236 4.8943 4.9473 17 6 13.0246 4.2939 6.1920 18 1 12.6653 3.3448 6.5614 19 6 14.0332 4.9562 6.8590 20 7 14.4704 6.1122 6.4093 21 14 14.7778 4.2124 8.4023 22 1 15.9283 3.3500 8.0307 23 1 15.2438 5.2993 9.3005 24 1 13.7534 3.3965 9.1024 25 6 7.4429 4.1697 -0.5054 26 6 5.9236 4.1719 -0.3434 27 1 5.6461 4.8631 0.4524 28 6 5.2693 4.6133 -1.6542 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7809 0.8908 34 1 3.6100 3.2367 0.8893 35 1 3.6107 3.2355 -0.8906 36 1 5.6168 1.4015 1.5449 37 1 5.7376 3.0995 2.0659 38 1 7.8252 1.5170 0.4961 39 1 7.9632 2.0950 2.1776 40 1 8.8571 3.5205 3.3594 41 1 10.0693 2.6758 2.3666 42 1 11.5002 4.7003 2.3898 43 1 10.2885 5.5456 3.3826 44 1 10.5579 3.8395 5.1623 45 1 11.7694 2.9947 4.1689 46 1 13.2000 5.0204 4.1927 47 1 11.9880 5.8645 5.1861 48 1 15.1802 6.5781 6.8784 49 1 7.7964 5.1914 -0.6447 50 1 7.7150 3.5639 -1.3697 51 1 4.1975 4.7389 -1.5010 52 1 5.7036 5.5597 -1.9764 53 1 5.4407 3.8557 -2.4189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589844899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:45 Heat of formation + Delta-G solvation = -155.846271 kcal Electronic energy + Delta-G solvation = -29443.158474 eV Core-core repulsion = 25313.438214 eV Total energy + Delta-G solvation = -4129.720260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.63040 -41.27800 -39.55904 -37.62379 -36.66112 -36.07816 -34.68036 -34.03819 -32.25295 -31.53174 -29.22866 -28.47498 -28.03328 -26.77269 -24.56216 -23.85841 -23.68745 -21.83025 -21.56821 -21.15190 -19.88502 -18.74708 -18.42620 -17.98979 -17.75265 -17.58899 -17.03136 -16.98537 -16.57056 -16.46358 -15.88632 -15.73572 -15.42273 -15.21289 -14.92451 -14.53560 -14.42767 -14.16584 -14.06352 -13.73187 -13.56782 -13.41054 -13.25985 -13.18574 -13.07069 -12.85118 -12.80515 -12.75949 -12.42174 -12.31705 -12.19350 -12.13551 -12.11114 -11.97292 -11.82318 -11.62829 -11.56516 -11.37276 -11.31846 -11.12381 -10.71310 -10.54079 -9.83460 -9.35521 -8.17650 -6.29990 1.16246 1.41172 1.43531 1.54513 1.60735 1.68869 1.96942 2.42831 2.82465 3.15128 3.53229 3.70373 3.75966 3.84696 3.97492 4.01368 4.06415 4.13478 4.19367 4.25476 4.30465 4.32719 4.35115 4.41283 4.50571 4.55007 4.67076 4.68383 4.70315 4.73333 4.78890 4.80725 4.84326 4.87500 4.88940 4.92698 5.02773 5.10818 5.18980 5.26955 5.33581 5.37605 5.40088 5.49991 5.57740 5.78954 5.88901 5.89450 5.97718 6.26119 6.38673 6.70542 6.88561 7.16672 7.39754 8.94569 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.001642 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.519250 B =17051.724052 C =18282.527798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.545 6.545 5 C -0.101 4.101 6 C 0.063 3.937 7 N -0.525 5.525 8 C 0.033 3.967 9 C 0.105 3.895 10 N -0.616 5.616 11 C 0.510 3.490 12 O -0.590 6.590 13 C -0.125 4.125 14 C -0.096 4.096 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.259 1.259 25 C 0.121 3.879 26 C 0.076 3.924 27 H 0.027 0.973 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.063 0.937 46 H -0.016 1.016 47 H -0.017 1.017 48 H 0.262 0.738 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.064 0.936 52 H 0.066 0.934 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.626 -17.383 -17.384 38.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.436 6.436 5 C -0.139 4.139 6 C -0.064 4.064 7 N -0.251 5.251 8 C -0.095 4.095 9 C -0.016 4.016 10 N -0.349 5.349 11 C 0.300 3.700 12 O -0.471 6.471 13 C -0.165 4.165 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.002 4.002 26 C -0.033 4.033 27 H 0.045 0.955 28 C -0.202 4.202 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.003 0.997 47 H 0.001 0.999 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.085 0.915 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.359 -16.738 -17.925 38.255 hybrid contribution 0.103 1.264 1.324 1.833 sum -29.256 -15.474 -16.602 37.027 Atomic orbital electron populations 1.23509 0.75062 1.05596 1.02348 1.86504 1.24767 1.33057 1.83681 1.24243 0.93063 0.80955 0.70988 1.90685 1.68355 1.37482 1.47057 1.21347 0.85177 0.98864 1.08479 1.21902 0.86978 0.95256 1.02310 1.61948 1.08143 1.23948 1.31015 1.22708 0.94814 1.02623 0.89381 1.22177 0.93250 0.83901 1.02308 1.48332 1.36305 1.22786 1.27496 1.21279 0.79039 0.84122 0.85551 1.90682 1.62711 1.24470 1.69224 1.21691 0.99347 1.00972 0.94452 1.21250 0.97066 0.98090 0.96971 1.21442 0.97513 0.98701 0.95539 1.19066 0.93659 0.94493 0.94717 1.21765 1.19019 1.06464 1.10747 0.91444 1.26092 0.97436 0.95295 1.01545 1.70136 1.29203 1.16546 1.41950 0.85378 0.78823 0.77986 0.78420 1.19671 1.21041 1.18274 1.21624 0.91409 0.99793 0.87378 1.21791 0.94257 0.89072 0.98198 0.95509 1.21865 1.00436 1.02159 0.95692 0.92255 0.92063 0.85226 0.84745 0.85469 0.95157 0.89433 0.86095 0.95165 0.88538 0.87207 0.86548 0.86127 0.93926 0.94198 0.92045 0.91819 0.99734 0.99852 0.92904 0.91062 0.89598 0.91741 0.91536 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.36 -4.18 10.56 -51.40 -0.54 -4.73 16 3 C 0.46 6.04 7.96 71.23 0.57 6.61 16 4 O -0.55 -10.91 15.73 21.96 0.35 -10.56 16 5 C -0.10 -0.71 5.83 29.85 0.17 -0.54 16 6 C 0.06 0.70 4.02 86.31 0.35 1.05 16 7 N -0.53 -6.02 4.44 -870.92 -3.87 -9.89 16 8 C 0.03 0.32 5.47 86.38 0.47 0.80 16 9 C 0.11 1.20 6.51 86.35 0.56 1.77 16 10 N -0.62 -12.44 3.02 -818.81 -2.47 -14.91 16 11 C 0.51 14.40 7.71 87.66 0.68 15.07 16 12 O -0.59 -22.78 15.44 -3.05 -0.05 -22.83 16 13 C -0.13 -3.12 4.07 29.85 0.12 -3.00 16 14 C -0.10 -3.50 4.50 30.60 0.14 -3.36 16 15 C -0.09 -3.85 5.15 30.60 0.16 -3.69 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 20 N -0.94 -59.28 13.29 21.45 0.28 -58.99 16 21 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 25 C 0.12 2.31 5.85 86.20 0.50 2.82 16 26 C 0.08 1.17 2.59 44.85 0.12 1.29 16 27 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 28 C -0.14 -1.75 8.51 71.98 0.61 -1.14 16 29 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 30 H 0.06 0.49 8.13 -2.39 -0.02 0.48 16 31 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.40 6.57 -2.38 -0.02 0.38 16 34 H 0.03 0.44 8.03 -2.39 -0.02 0.42 16 35 H 0.09 1.09 5.53 -2.39 -0.01 1.08 16 36 H 0.12 0.48 6.38 -2.38 -0.02 0.47 16 37 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.95 6.02 -2.39 -0.01 0.94 16 40 H 0.12 2.30 7.66 -2.39 -0.02 2.28 16 41 H 0.12 2.33 8.00 -2.39 -0.02 2.31 16 42 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.04 1.61 8.10 -2.39 -0.02 1.60 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 46 H -0.02 -0.96 8.14 -2.38 -0.02 -0.97 16 47 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.07 1.74 7.06 -2.38 -0.02 1.72 16 50 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.06 0.77 6.46 -2.39 -0.02 0.75 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -82.14 419.53 3.09 -79.06 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.87 Total: 6.99 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 6.49 Total: -10.96 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -6.05 Total: -83.79 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.24 Total: -38.12 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -82.14 3.09 -79.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.789 kcal (2) G-P(sol) polarization free energy of solvation -82.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds