Wall clock time and date at job start Wed Apr 1 2020 00:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.51490 * 2 1 4 4 C 1.53299 * 109.51485 * 120.16356 * 2 1 3 5 5 N 1.47145 * 108.42121 * 172.25210 * 4 2 1 6 6 C 1.34769 * 120.99364 * 129.42906 * 5 4 2 7 7 O 1.21585 * 120.00634 * 175.00470 * 6 5 4 8 8 N 1.34784 * 120.00124 * 355.00319 * 6 5 4 9 9 C 1.46493 * 120.00507 * 185.08514 * 8 6 5 10 10 C 1.52991 * 109.47492 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47307 * 300.00245 * 10 9 8 12 12 C 1.53010 * 109.46974 * 59.99714 * 10 9 8 13 13 C 1.50699 * 109.47544 * 179.97438 * 10 9 8 14 14 H 1.07997 * 119.99835 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00026 * 180.02562 * 13 10 9 16 16 N 1.31506 * 120.00261 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99898 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46933 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47014 * 119.99913 * 17 15 13 20 20 H 1.48491 * 109.47381 * 240.00058 * 17 15 13 21 21 C 1.47177 * 118.01940 * 309.44601 * 5 4 2 22 22 C 1.53190 * 108.37065 * 50.41559 * 21 5 4 23 23 C 1.53094 * 109.42111 * 67.83053 * 22 21 5 24 24 C 1.53203 * 109.02896 * 176.80358 * 23 22 21 25 25 C 1.53096 * 109.14097 * 303.11480 * 24 23 22 26 26 O 1.42897 * 109.44861 * 57.64426 * 25 24 23 27 27 C 1.42925 * 114.09227 * 298.82653 * 26 25 24 28 28 O 1.42866 * 109.40834 * 307.81896 * 22 21 5 29 29 H 1.08999 * 109.46935 * 180.10562 * 1 2 3 30 30 H 1.09003 * 109.46637 * 300.10368 * 1 2 3 31 31 H 1.09000 * 109.47077 * 60.10495 * 1 2 3 32 32 H 1.09004 * 109.66847 * 291.97980 * 4 2 1 33 33 H 1.08993 * 109.67483 * 52.47517 * 4 2 1 34 34 H 0.96998 * 119.99294 * 5.08289 * 8 6 5 35 35 H 1.09009 * 109.46749 * 300.00085 * 9 8 6 36 36 H 1.09004 * 109.47002 * 59.99464 * 9 8 6 37 37 H 1.09001 * 109.47194 * 59.99283 * 11 10 9 38 38 H 1.08998 * 109.47016 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.46759 * 299.99491 * 11 10 9 40 40 H 1.08998 * 109.46847 * 60.00426 * 12 10 9 41 41 H 1.08998 * 109.46941 * 180.02562 * 12 10 9 42 42 H 1.08996 * 109.47223 * 299.99983 * 12 10 9 43 43 H 0.97001 * 120.00030 * 179.97438 * 16 15 13 44 44 H 1.08996 * 109.68765 * 170.14036 * 21 5 4 45 45 H 1.09001 * 109.68227 * 290.66128 * 21 5 4 46 46 H 1.09003 * 109.54358 * 296.66549 * 23 22 21 47 47 H 1.08995 * 109.54092 * 56.94044 * 23 22 21 48 48 H 1.08995 * 109.52258 * 63.01103 * 24 23 22 49 49 H 1.09000 * 109.52547 * 183.21561 * 24 23 22 50 50 H 1.08997 * 109.47272 * 177.64115 * 25 24 23 51 51 H 1.09000 * 109.47165 * 297.64509 * 25 24 23 52 52 H 1.09003 * 109.48407 * 301.03673 * 27 26 25 53 53 H 1.09008 * 109.47525 * 181.00733 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7260 1.2493 5 7 3.5013 -0.8768 1.1341 6 6 4.3189 -0.5044 2.1387 7 8 5.5130 -0.7200 2.0624 8 7 3.8128 0.1070 3.2280 9 6 4.7118 0.6115 4.2689 10 6 3.8883 1.2565 5.3854 11 6 3.0709 2.4157 4.8118 12 6 2.9431 0.2153 5.9885 13 6 4.8131 1.7749 6.4564 14 1 5.8813 1.6558 6.3515 15 6 4.2953 2.4002 7.5708 16 7 2.9945 2.5448 7.6988 17 14 5.4415 3.0422 8.8988 18 1 6.8484 2.7562 8.5189 19 1 5.2563 4.5082 9.0463 20 1 5.1312 2.3720 10.1870 21 6 4.0414 -1.4460 -0.1110 22 6 3.4305 -0.6875 -1.2935 23 6 3.9554 0.7507 -1.3016 24 6 3.4022 1.4773 -2.5317 25 6 3.7992 0.7043 -3.7921 26 8 3.3042 -0.6334 -3.7056 27 6 3.8235 -1.3773 -2.6012 28 8 2.0076 -0.6760 -1.1660 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.8026 -0.1413 2.1375 33 1 1.5755 -1.7085 1.3199 34 1 2.8533 0.2130 3.3227 35 1 5.2944 -0.2144 4.6773 36 1 5.3849 1.3534 3.8393 37 1 2.4020 2.0403 4.0373 38 1 2.4839 2.8749 5.6071 39 1 3.7443 3.1574 4.3821 40 1 3.5254 -0.6105 6.3972 41 1 2.3561 0.6750 6.7836 42 1 2.2742 -0.1599 5.2141 43 1 2.6302 2.9844 8.4830 44 1 5.1258 -1.3359 -0.1250 45 1 3.7788 -2.5018 -0.1763 46 1 3.6279 1.2635 -0.3973 47 1 5.0445 0.7410 -1.3430 48 1 2.3157 1.5315 -2.4647 49 1 3.8162 2.4847 -2.5765 50 1 3.3730 1.1937 -4.6678 51 1 4.8855 0.6850 -3.8794 52 1 4.9099 -1.4260 -2.6743 53 1 3.4123 -2.3868 -2.6175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:23 Heat of formation + Delta-G solvation = -132.480659 kcal Electronic energy + Delta-G solvation = -32452.790166 eV Core-core repulsion = 28324.083115 eV Total energy + Delta-G solvation = -4128.707051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13503 -40.66828 -38.87982 -38.16553 -35.82304 -35.20079 -34.57545 -33.46658 -32.66811 -31.09219 -28.12675 -27.58825 -27.56312 -27.26008 -26.39684 -25.77210 -23.44036 -22.76757 -21.34539 -20.69162 -20.41892 -19.39636 -17.94489 -17.82563 -17.56275 -17.08195 -16.84427 -16.73635 -16.48626 -16.15242 -16.00491 -15.52688 -15.34825 -15.17235 -14.79840 -14.71763 -14.30967 -14.08371 -13.99433 -13.75086 -13.45795 -13.35976 -13.21327 -13.13171 -12.99014 -12.93917 -12.73724 -12.71075 -12.57353 -12.27492 -12.15356 -12.13813 -12.01022 -11.77896 -11.51065 -11.48751 -11.29975 -11.11618 -10.98588 -10.72061 -10.42624 -10.41476 -10.10015 -9.42530 -8.03525 -6.18947 1.40930 1.44837 1.50106 1.55831 2.07189 2.44543 2.47401 2.90294 2.98010 3.20416 3.51010 3.58375 3.68083 3.75894 3.91184 3.99562 4.07479 4.17432 4.32803 4.34678 4.39202 4.41311 4.49961 4.50584 4.59593 4.60561 4.67877 4.69497 4.71104 4.84017 4.90630 4.92635 4.96054 4.99789 5.02339 5.06522 5.11254 5.17247 5.21882 5.28661 5.34792 5.35131 5.57273 5.65282 5.66600 5.83695 6.11263 6.13048 6.19775 6.26642 6.42344 6.85074 6.91785 7.48815 7.50087 8.95756 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.002716 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.436149 B =10308.127837 C =10597.831396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.058 0.942 4 C 0.079 3.921 5 N -0.628 5.628 6 C 0.702 3.298 7 O -0.634 6.634 8 N -0.726 5.726 9 C 0.167 3.833 10 C 0.053 3.947 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.528 4.528 14 H 0.044 0.956 15 C 0.030 3.970 16 N -0.898 5.898 17 Si 0.945 3.055 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.108 3.892 22 C 0.079 3.921 23 C -0.146 4.146 24 C -0.145 4.145 25 C 0.057 3.943 26 O -0.386 6.386 27 C 0.079 3.921 28 O -0.360 6.360 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.261 0.739 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.061 0.939 52 H 0.084 0.916 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 -5.212 -21.311 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 H 0.076 0.924 4 C -0.044 4.044 5 N -0.366 5.366 6 C 0.404 3.596 7 O -0.516 6.516 8 N -0.383 5.383 9 C 0.043 3.957 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.062 0.938 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.015 4.015 22 C 0.038 3.962 23 C -0.184 4.184 24 C -0.182 4.182 25 C -0.019 4.019 26 O -0.305 6.305 27 C 0.002 3.998 28 O -0.279 6.279 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.127 0.873 51 H 0.079 0.921 52 H 0.102 0.898 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.434 -5.425 -21.478 22.809 hybrid contribution 0.758 0.804 1.736 2.058 sum -4.676 -4.621 -19.741 20.807 Atomic orbital electron populations 1.21730 0.90274 1.03863 1.03680 1.22552 0.96733 0.95138 0.84231 0.92401 1.22589 0.79172 1.02813 0.99833 1.47205 1.06560 1.66986 1.15808 1.16021 0.84618 0.78396 0.80599 1.90845 1.15684 1.63448 1.81576 1.45380 1.10929 1.61532 1.20476 1.21153 0.91724 0.95829 0.86984 1.18350 0.93092 0.92536 0.90784 1.21643 0.98667 0.98379 0.98833 1.21662 0.98625 0.97098 1.00330 1.21282 0.92779 1.37864 1.04766 0.93757 1.25427 0.96283 0.95868 0.99430 1.69899 1.11332 1.43431 1.29043 0.85713 0.79519 0.78026 0.79587 1.20060 1.20668 1.20740 1.22101 1.00047 0.97769 0.81612 1.22480 0.82236 0.95564 0.95907 1.22116 1.01184 0.95838 0.99215 1.22071 1.01812 0.99837 0.94522 1.22743 0.99023 0.82161 0.98020 1.87959 1.70114 1.25361 1.47029 1.22591 0.99263 0.95722 0.82209 1.88031 1.19602 1.77026 1.43229 0.90959 0.89360 0.91252 0.89109 0.89051 0.75850 0.94675 0.94609 0.94785 0.91743 0.96320 0.96364 0.91694 0.94790 0.92985 0.89317 0.89503 0.92593 0.90976 0.91494 0.89818 0.87314 0.92097 0.89821 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.57 71.98 0.69 -1.29 16 2 C 0.07 1.38 3.02 30.70 0.09 1.47 16 3 H 0.06 1.23 6.19 -2.39 -0.01 1.21 16 4 C 0.08 1.64 5.92 86.36 0.51 2.16 16 5 N -0.63 -16.88 2.60 -835.51 -2.17 -19.05 16 6 C 0.70 25.06 8.31 179.05 1.49 26.54 16 7 O -0.63 -27.58 15.85 -3.98 -0.06 -27.64 16 8 N -0.73 -25.85 4.87 -478.55 -2.33 -28.19 16 9 C 0.17 7.23 4.51 86.38 0.39 7.62 16 10 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 11 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 12 C -0.12 -5.27 8.08 71.99 0.58 -4.69 16 13 C -0.53 -27.83 8.01 25.60 0.21 -27.63 16 14 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 15 C 0.03 1.55 5.15 84.66 0.44 1.99 16 16 N -0.90 -47.26 9.35 21.45 0.20 -47.06 16 17 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.11 2.50 5.28 86.31 0.46 2.95 16 22 C 0.08 1.59 0.71 -10.70 -0.01 1.58 16 23 C -0.15 -3.06 4.33 30.69 0.13 -2.92 16 24 C -0.14 -2.48 5.99 30.69 0.18 -2.30 16 25 C 0.06 0.87 6.84 72.01 0.49 1.36 16 26 O -0.39 -7.53 10.70 -142.18 -1.52 -9.05 16 27 C 0.08 1.34 5.81 71.98 0.42 1.76 16 28 O -0.36 -7.62 9.30 -142.18 -1.32 -8.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.84 5.66 -2.38 -0.01 1.83 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.40 12.54 3.67 -92.71 -0.34 12.20 16 35 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 38 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 42 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 43 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 44 H 0.09 2.31 7.11 -2.39 -0.02 2.29 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.39 6.04 -2.39 -0.01 1.37 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.07 1.27 7.84 -2.39 -0.02 1.26 16 49 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -63.79 394.20 1.99 -61.80 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.56 Total: 27.31 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 6.62 Total: 6.46 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.30 Total: -94.30 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -2.91 Total: -45.63 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.79 1.99 -61.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds