Wall clock time and date at job start Wed Apr 1 2020 00:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51217 * 2 1 4 4 C 1.52876 * 109.62713 * 240.00656 * 2 1 3 5 5 N 1.47154 * 108.63626 * 187.85657 * 4 2 1 6 6 C 1.34779 * 120.99142 * 230.52725 * 5 4 2 7 7 O 1.21591 * 120.00091 * 184.76378 * 6 5 4 8 8 N 1.34778 * 120.00187 * 4.76153 * 6 5 4 9 9 C 1.46495 * 120.00340 * 185.04575 * 8 6 5 10 10 C 1.52994 * 109.47248 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.46988 * 60.00261 * 10 9 8 12 12 C 1.53000 * 109.47351 * 300.00472 * 10 9 8 13 13 C 1.50704 * 109.47417 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99753 * 358.36446 * 13 10 9 15 15 C 1.37878 * 120.00243 * 178.36554 * 13 10 9 16 16 N 1.31510 * 120.00042 * 194.52890 * 15 13 10 17 17 Si 1.86802 * 119.99652 * 14.80871 * 15 13 10 18 18 H 1.48495 * 109.47360 * 84.84619 * 17 15 13 19 19 H 1.48507 * 109.46584 * 204.84305 * 17 15 13 20 20 H 1.48494 * 109.47480 * 324.84188 * 17 15 13 21 21 C 1.47171 * 118.01874 * 50.25834 * 5 4 2 22 22 C 1.53190 * 108.37312 * 309.82810 * 21 5 4 23 23 C 1.53075 * 109.46793 * 172.24540 * 22 21 5 24 24 C 1.53204 * 109.03398 * 176.77024 * 23 22 21 25 25 C 1.53087 * 109.15157 * 303.14070 * 24 23 22 26 26 O 1.42904 * 109.45112 * 57.63035 * 25 24 23 27 27 C 1.42928 * 114.07583 * 298.80754 * 26 25 24 28 28 O 1.42869 * 109.40735 * 52.17246 * 22 21 5 29 29 H 1.09000 * 109.47546 * 299.88753 * 1 2 3 30 30 H 1.08995 * 109.47664 * 59.89508 * 1 2 3 31 31 H 1.09008 * 109.46942 * 179.89386 * 1 2 3 32 32 H 1.08998 * 109.61538 * 68.03080 * 4 2 1 33 33 H 1.08998 * 109.52481 * 307.62866 * 4 2 1 34 34 H 0.97000 * 119.99437 * 5.05409 * 8 6 5 35 35 H 1.09007 * 109.47063 * 60.00250 * 9 8 6 36 36 H 1.09006 * 109.47039 * 300.00578 * 9 8 6 37 37 H 1.09001 * 109.47410 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47229 * 299.99537 * 11 10 9 39 39 H 1.09000 * 109.47504 * 60.00203 * 11 10 9 40 40 H 1.09004 * 109.46706 * 309.49926 * 12 10 9 41 41 H 1.08993 * 109.47456 * 69.50114 * 12 10 9 42 42 H 1.09004 * 109.47086 * 189.50792 * 12 10 9 43 43 H 0.96998 * 120.00283 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.68641 * 69.54889 * 21 5 4 45 45 H 1.09001 * 109.68403 * 190.07222 * 21 5 4 46 46 H 1.09008 * 109.54191 * 296.63182 * 23 22 21 47 47 H 1.08993 * 109.54577 * 56.90320 * 23 22 21 48 48 H 1.08994 * 109.52630 * 183.23665 * 24 23 22 49 49 H 1.09003 * 109.57623 * 63.07520 * 24 23 22 50 50 H 1.08999 * 109.47514 * 297.63003 * 25 24 23 51 51 H 1.09007 * 109.47417 * 177.62188 * 25 24 23 52 52 H 1.08999 * 109.48128 * 301.08004 * 27 26 25 53 53 H 1.08997 * 109.47922 * 181.03328 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5025 -0.8744 -1.1336 6 6 4.3202 -0.5006 -2.1377 7 8 5.5145 -0.7155 -2.0612 8 7 3.8140 0.1114 -3.2266 9 6 4.6835 0.4182 -4.3650 10 6 3.8665 1.1075 -5.4596 11 6 3.2693 2.4045 -4.9100 12 6 2.7385 0.1794 -5.9150 13 6 4.7608 1.4226 -6.6310 14 1 5.8127 1.1816 -6.5874 15 6 4.2362 2.0184 -7.7583 16 7 4.9293 2.0360 -8.8758 17 14 2.5442 2.8076 -7.6959 18 1 2.6647 4.1974 -7.1868 19 1 1.9577 2.8293 -9.0601 20 1 1.6653 2.0236 -6.7916 21 6 4.0426 -1.4437 0.1114 22 6 3.4305 -0.6864 1.2940 23 6 3.8224 -1.3794 2.6015 24 6 3.2734 -0.5694 3.7803 25 6 3.8063 0.8633 3.6968 26 8 3.4305 1.4385 2.4437 27 6 3.9550 0.7509 1.3058 28 8 2.0076 -0.6760 1.1659 29 1 -0.3634 0.5121 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0019 32 1 1.8046 -0.1320 -2.1333 33 1 1.5751 -1.7013 -1.3200 34 1 2.8740 0.3488 -3.2565 35 1 5.1094 -0.5058 -4.7564 36 1 5.4869 1.0797 -4.0407 37 1 2.6868 2.8953 -5.6896 38 1 2.6222 2.1762 -4.0630 39 1 4.0728 3.0657 -4.5856 40 1 3.1484 -0.8035 -6.1476 41 1 2.0007 0.0862 -5.1181 42 1 2.2630 0.5944 -6.8037 43 1 4.5601 2.4549 -9.6689 44 1 3.7804 -2.4997 0.1763 45 1 5.1269 -1.3332 0.1256 46 1 3.4009 -2.3845 2.6220 47 1 4.9085 -1.4365 2.6726 48 1 3.5965 -1.0242 4.7167 49 1 2.1843 -0.5560 3.7386 50 1 4.8930 0.8522 3.7802 51 1 3.3854 1.4555 4.5093 52 1 5.0437 0.7402 1.3575 53 1 3.6390 1.2606 0.3956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948305.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:27 Heat of formation + Delta-G solvation = -117.788912 kcal Electronic energy + Delta-G solvation = -32555.933192 eV Core-core repulsion = 28427.863223 eV Total energy + Delta-G solvation = -4128.069969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14981 -40.71385 -38.89777 -38.37142 -35.85588 -35.31285 -34.81435 -33.43835 -33.01924 -31.13519 -28.31797 -28.01086 -27.64485 -27.12215 -26.33703 -26.08097 -23.61939 -22.51679 -21.21859 -21.01312 -20.59624 -19.32166 -18.08870 -17.96424 -17.57266 -17.33321 -17.06683 -16.71223 -16.61220 -16.21443 -15.80414 -15.55526 -15.46847 -15.19463 -14.86778 -14.77838 -14.55105 -14.44268 -14.01264 -13.96524 -13.78325 -13.67154 -13.55954 -13.30859 -13.01286 -12.98468 -12.92215 -12.60840 -12.38850 -12.20242 -12.16700 -12.03004 -11.93957 -11.75934 -11.60695 -11.52692 -11.25919 -11.13531 -11.04418 -10.61920 -10.41386 -10.38715 -10.11759 -9.42335 -8.30076 -6.31719 1.36614 1.38906 1.48263 1.51089 2.05220 2.35354 2.51010 2.85347 2.87847 3.06349 3.50695 3.52244 3.66227 3.81361 3.95546 4.02475 4.05723 4.10456 4.20193 4.24932 4.32055 4.36014 4.39695 4.41269 4.52090 4.59569 4.63045 4.69982 4.74314 4.75233 4.81808 4.84380 4.86434 4.92327 4.94424 5.00583 5.03132 5.05075 5.11484 5.16632 5.28626 5.34453 5.35491 5.40561 5.53307 5.71441 5.78715 5.82544 6.05530 6.26793 6.30779 6.72082 6.90208 7.32892 7.48520 8.87170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.002913 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.178847 B = 9610.991516 C = 9971.310694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 H 0.056 0.944 4 C 0.079 3.921 5 N -0.631 5.631 6 C 0.703 3.297 7 O -0.633 6.633 8 N -0.726 5.726 9 C 0.176 3.824 10 C 0.029 3.971 11 C -0.143 4.143 12 C -0.142 4.142 13 C -0.519 4.519 14 H 0.027 0.973 15 C 0.018 3.982 16 N -0.946 5.946 17 Si 0.938 3.062 18 H -0.283 1.283 19 H -0.313 1.313 20 H -0.196 1.196 21 C 0.109 3.891 22 C 0.082 3.918 23 C -0.107 4.107 24 C -0.143 4.143 25 C 0.048 3.952 26 O -0.393 6.393 27 C 0.042 3.958 28 O -0.360 6.360 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.405 0.595 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.107 0.893 52 H 0.057 0.943 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 -6.321 27.348 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.074 0.926 4 C -0.044 4.044 5 N -0.368 5.368 6 C 0.404 3.596 7 O -0.514 6.514 8 N -0.383 5.383 9 C 0.052 3.948 10 C 0.028 3.972 11 C -0.200 4.200 12 C -0.199 4.199 13 C -0.557 4.557 14 H 0.045 0.955 15 C -0.180 4.180 16 N -0.585 5.585 17 Si 0.766 3.234 18 H -0.210 1.210 19 H -0.243 1.243 20 H -0.119 1.119 21 C -0.015 4.015 22 C 0.041 3.959 23 C -0.144 4.144 24 C -0.181 4.181 25 C -0.028 4.028 26 O -0.312 6.312 27 C -0.035 4.035 28 O -0.279 6.279 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.125 0.875 52 H 0.076 0.924 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.641 -6.370 27.317 30.370 hybrid contribution 0.190 0.625 -1.198 1.364 sum -11.451 -5.745 26.120 29.092 Atomic orbital electron populations 1.21712 0.90120 1.03816 1.03745 1.22497 0.96935 0.95134 0.84258 0.92583 1.22547 0.78949 1.03066 0.99844 1.47294 1.06709 1.66666 1.16161 1.16004 0.84569 0.78510 0.80484 1.90874 1.15634 1.63690 1.81203 1.45283 1.13840 1.62981 1.16230 1.20915 0.91922 0.97886 0.84077 1.18643 0.93612 0.92945 0.91994 1.22231 0.99995 0.98256 0.99537 1.22277 0.97735 0.99123 1.00812 1.21006 0.95093 1.40386 0.99238 0.95484 1.25860 1.01998 0.96089 0.94051 1.70116 1.41607 1.45189 1.01625 0.86489 0.81395 0.79360 0.76139 1.20992 1.24263 1.11910 1.22150 1.00020 0.97911 0.81377 1.22399 0.82382 0.95061 0.96097 1.21616 1.01986 1.00006 0.90819 1.22069 1.01840 0.95249 0.98927 1.22866 0.99576 0.94856 0.85477 1.87940 1.75016 1.53650 1.14558 1.23010 0.98010 0.93003 0.89464 1.87980 1.19444 1.76883 1.43595 0.91547 0.89050 0.90927 0.88446 0.88940 0.75554 0.94298 0.94261 0.94483 0.91213 0.93645 0.94040 0.91641 0.93227 0.92656 0.89371 0.89408 0.89213 0.89014 0.88356 0.91293 0.92457 0.87541 0.92440 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.57 71.98 0.69 -0.95 16 2 C 0.07 1.19 3.00 30.55 0.09 1.28 16 3 H 0.06 1.11 6.21 -2.39 -0.01 1.10 16 4 C 0.08 1.39 5.91 86.21 0.51 1.90 16 5 N -0.63 -15.35 2.60 -836.31 -2.17 -17.52 16 6 C 0.70 23.17 8.31 179.05 1.49 24.65 16 7 O -0.63 -26.41 15.85 -4.00 -0.06 -26.47 16 8 N -0.73 -22.97 4.91 -478.53 -2.35 -25.32 16 9 C 0.18 7.15 4.49 86.38 0.39 7.54 16 10 C 0.03 1.23 0.50 -52.93 -0.03 1.21 16 11 C -0.14 -5.30 7.63 71.98 0.55 -4.75 16 12 C -0.14 -5.28 7.48 71.98 0.54 -4.74 16 13 C -0.52 -28.62 8.62 25.60 0.22 -28.40 16 14 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 15 C 0.02 0.99 5.31 84.66 0.45 1.44 16 16 N -0.95 -58.68 13.96 21.45 0.30 -58.39 16 17 Si 0.94 41.84 22.78 68.60 1.56 43.40 16 18 H -0.28 -12.45 7.10 99.48 0.71 -11.74 16 19 H -0.31 -14.44 7.11 99.48 0.71 -13.74 16 20 H -0.20 -7.21 4.59 99.48 0.46 -6.76 16 21 C 0.11 2.33 5.29 86.31 0.46 2.79 16 22 C 0.08 1.51 0.71 -10.70 -0.01 1.50 16 23 C -0.11 -1.43 5.03 30.69 0.15 -1.27 16 24 C -0.14 -1.74 5.98 30.69 0.18 -1.56 16 25 C 0.05 0.71 6.84 72.01 0.49 1.20 16 26 O -0.39 -8.63 10.70 -142.11 -1.52 -10.15 16 27 C 0.04 0.93 5.10 71.98 0.37 1.29 16 28 O -0.36 -6.87 9.31 -142.11 -1.32 -8.19 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.51 5.65 -2.39 -0.01 1.50 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.40 10.29 3.79 -92.71 -0.35 9.94 16 35 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.04 1.41 2.57 -2.39 -0.01 1.41 16 38 H 0.07 1.97 6.86 -2.39 -0.02 1.96 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.58 8.12 -2.38 -0.02 1.56 16 41 H 0.06 1.84 7.13 -2.39 -0.02 1.82 16 42 H 0.05 1.94 3.95 -2.39 -0.01 1.93 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 2.17 7.11 -2.39 -0.02 2.15 16 46 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 1.02 7.85 -2.39 -0.02 1.00 16 50 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.08 2.00 6.06 -2.39 -0.01 1.99 16 Total: -1.00 -73.79 384.24 1.28 -72.51 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.31 Total: 27.00 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.54 Total: 3.13 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.22 Total: -101.22 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.91 Total: -44.81 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.56 Total: 43.40 kcal Total: -73.79 1.28 -72.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948305.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.282 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds