Wall clock time and date at job start Wed Apr 1 2020 00:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.51177 * 2 1 4 4 C 1.52845 * 109.63660 * 240.01916 * 2 1 3 5 5 N 1.47153 * 108.66297 * 187.87929 * 4 2 1 6 6 C 1.34774 * 120.99086 * 230.48692 * 5 4 2 7 7 O 1.21585 * 120.00154 * 185.32261 * 6 5 4 8 8 N 1.34778 * 120.00000 * 5.32920 * 6 5 4 9 9 C 1.46506 * 120.00003 * 185.48285 * 8 6 5 10 10 C 1.52999 * 109.47202 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46845 * 299.99759 * 10 9 8 12 12 C 1.53001 * 109.47051 * 59.99699 * 10 9 8 13 13 C 1.50696 * 109.47319 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00034 * 1.58570 * 13 10 9 15 15 C 1.37873 * 120.00185 * 181.58678 * 13 10 9 16 16 N 1.31518 * 120.00139 * 193.59184 * 15 13 10 17 17 Si 1.86802 * 119.99976 * 13.59315 * 15 13 10 18 18 H 1.48496 * 109.47344 * 84.74708 * 17 15 13 19 19 H 1.48496 * 109.47094 * 204.74946 * 17 15 13 20 20 H 1.48507 * 109.46970 * 324.74606 * 17 15 13 21 21 C 1.47179 * 118.01739 * 50.22167 * 5 4 2 22 22 C 1.53190 * 108.36272 * 309.84827 * 21 5 4 23 23 C 1.53104 * 109.42230 * 292.18780 * 22 21 5 24 24 C 1.53193 * 109.02349 * 183.17347 * 23 22 21 25 25 C 1.53095 * 109.14108 * 56.88981 * 24 23 22 26 26 O 1.42898 * 109.45402 * 302.36253 * 25 24 23 27 27 C 1.42924 * 114.09569 * 61.16530 * 26 25 24 28 28 O 1.42862 * 109.40851 * 52.19329 * 22 21 5 29 29 H 1.08993 * 109.47215 * 299.89018 * 1 2 3 30 30 H 1.09001 * 109.47466 * 59.89200 * 1 2 3 31 31 H 1.09007 * 109.46904 * 179.88629 * 1 2 3 32 32 H 1.08998 * 109.60914 * 68.03906 * 4 2 1 33 33 H 1.08998 * 109.50422 * 307.65649 * 4 2 1 34 34 H 0.97001 * 119.99883 * 5.48003 * 8 6 5 35 35 H 1.09003 * 109.47155 * 59.99669 * 9 8 6 36 36 H 1.09005 * 109.47069 * 299.99729 * 9 8 6 37 37 H 1.09003 * 109.46967 * 69.76545 * 11 10 9 38 38 H 1.09002 * 109.47123 * 189.76040 * 11 10 9 39 39 H 1.08999 * 109.47604 * 309.76683 * 11 10 9 40 40 H 1.08991 * 109.47108 * 60.00213 * 12 10 9 41 41 H 1.09005 * 109.46882 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47192 * 300.00176 * 12 10 9 43 43 H 0.96998 * 119.99639 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.68726 * 69.56440 * 21 5 4 45 45 H 1.09002 * 109.68291 * 190.09068 * 21 5 4 46 46 H 1.09003 * 109.54559 * 303.03505 * 23 22 21 47 47 H 1.08998 * 109.53947 * 63.21808 * 23 22 21 48 48 H 1.08998 * 109.52876 * 176.79037 * 24 23 22 49 49 H 1.09004 * 109.52769 * 296.92581 * 24 23 22 50 50 H 1.09009 * 109.47711 * 62.35435 * 25 24 23 51 51 H 1.09000 * 109.48137 * 182.36480 * 25 24 23 52 52 H 1.09002 * 109.48037 * 178.99716 * 27 26 25 53 53 H 1.09003 * 109.48739 * 58.96092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0436 -0.7194 -1.2469 5 7 3.5025 -0.8746 -1.1336 6 6 4.3202 -0.5015 -2.1379 7 8 5.5130 -0.7261 -2.0661 8 7 3.8157 0.1206 -3.2218 9 6 4.6823 0.4186 -4.3650 10 6 3.8680 1.1224 -5.4524 11 6 2.7244 0.2114 -5.9032 12 6 3.2925 2.4259 -4.8953 13 6 4.7592 1.4283 -6.6285 14 1 5.7959 1.1259 -6.6135 15 6 4.2511 2.0942 -7.7236 16 7 4.9336 2.1285 -8.8473 17 14 2.5933 2.9478 -7.6113 18 1 2.7739 4.3068 -7.0406 19 1 1.9992 3.0556 -8.9680 20 1 1.6889 2.1595 -6.7361 21 6 4.0426 -1.4440 0.1115 22 6 3.4305 -0.6863 1.2939 23 6 3.9540 0.7524 1.3026 24 6 3.3992 1.4783 2.5323 25 6 3.7961 0.7056 3.7929 26 8 3.3028 -0.6327 3.7058 27 6 3.8236 -1.3760 2.6017 28 8 2.0076 -0.6760 1.1658 29 1 -0.3633 0.5121 0.8909 30 1 -0.3634 0.5155 -0.8890 31 1 -0.3633 -1.0277 -0.0020 32 1 1.8049 -0.1312 -2.1330 33 1 1.5747 -1.7006 -1.3201 34 1 2.8789 0.3711 -3.2451 35 1 5.0927 -0.5101 -4.7616 36 1 5.4968 1.0679 -4.0439 37 1 1.9881 0.1299 -5.1035 38 1 2.2520 0.6332 -6.7903 39 1 3.1181 -0.7778 -6.1367 40 1 4.1072 3.0748 -4.5742 41 1 2.7120 2.9271 -5.6699 42 1 2.6478 2.2043 -4.0448 43 1 4.5760 2.5968 -9.6178 44 1 3.7801 -2.4998 0.1766 45 1 5.1269 -1.3337 0.1257 46 1 5.0432 0.7439 1.3447 47 1 3.6281 1.2644 0.3972 48 1 3.8120 2.4861 2.5776 49 1 2.3126 1.5325 2.4640 50 1 4.8825 0.6873 3.8810 51 1 3.3687 1.1942 4.6684 52 1 3.4137 -2.3858 2.6176 53 1 4.9101 -1.4233 2.6754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:30 Heat of formation + Delta-G solvation = -117.094324 kcal Electronic energy + Delta-G solvation = -32553.731952 eV Core-core repulsion = 28425.692102 eV Total energy + Delta-G solvation = -4128.039850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.15104 -40.70902 -38.94481 -38.39624 -35.83286 -35.19881 -34.58968 -33.51719 -33.29700 -31.13213 -28.30821 -28.03291 -27.64401 -27.12949 -26.42427 -25.91987 -23.44782 -22.75129 -21.33492 -21.03095 -20.42414 -19.35093 -18.10326 -17.92410 -17.57214 -17.25400 -16.99664 -16.81875 -16.58244 -16.14807 -16.03056 -15.56199 -15.42400 -15.31277 -14.89958 -14.74638 -14.46649 -14.39011 -14.04161 -13.97327 -13.78064 -13.73395 -13.47022 -13.35264 -13.01277 -12.93674 -12.92646 -12.74200 -12.39166 -12.15988 -12.13232 -12.01023 -11.96960 -11.79086 -11.77335 -11.49212 -11.18088 -11.07069 -10.99218 -10.63267 -10.43787 -10.40119 -10.15569 -9.43800 -8.30509 -6.32871 1.35968 1.37500 1.47965 1.50971 2.05604 2.34380 2.47866 2.85278 2.97967 3.05651 3.51344 3.58396 3.68200 3.77688 3.91799 3.97711 4.04456 4.10079 4.19267 4.30589 4.33451 4.34720 4.38743 4.41123 4.50191 4.60398 4.61146 4.70365 4.71175 4.71848 4.79981 4.83280 4.84487 4.90714 4.92108 4.93518 5.00710 5.03067 5.11008 5.15592 5.22292 5.28571 5.35154 5.39372 5.51992 5.70675 5.77679 5.82698 6.12211 6.27183 6.29919 6.71286 6.90446 7.32033 7.48854 8.86796 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019963 B = 0.002903 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.248209 B = 9642.264073 C =10002.135844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.061 0.939 4 C 0.078 3.922 5 N -0.627 5.627 6 C 0.704 3.296 7 O -0.633 6.633 8 N -0.726 5.726 9 C 0.177 3.823 10 C 0.029 3.971 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.519 4.519 14 H 0.027 0.973 15 C 0.017 3.983 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.282 1.282 19 H -0.315 1.315 20 H -0.202 1.202 21 C 0.108 3.892 22 C 0.080 3.920 23 C -0.146 4.146 24 C -0.144 4.144 25 C 0.056 3.944 26 O -0.387 6.387 27 C 0.078 3.922 28 O -0.360 6.360 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.405 0.595 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.265 0.735 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.108 0.892 52 H 0.112 0.888 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -4.087 26.067 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.079 0.921 4 C -0.045 4.045 5 N -0.365 5.365 6 C 0.405 3.595 7 O -0.515 6.515 8 N -0.384 5.384 9 C 0.052 3.948 10 C 0.028 3.972 11 C -0.197 4.197 12 C -0.202 4.202 13 C -0.557 4.557 14 H 0.045 0.955 15 C -0.181 4.181 16 N -0.586 5.586 17 Si 0.774 3.226 18 H -0.209 1.209 19 H -0.245 1.245 20 H -0.125 1.125 21 C -0.016 4.016 22 C 0.039 3.961 23 C -0.183 4.183 24 C -0.182 4.182 25 C -0.020 4.020 26 O -0.305 6.305 27 C 0.001 3.999 28 O -0.279 6.279 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.244 0.756 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.126 0.874 52 H 0.130 0.870 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.387 -4.379 26.185 28.888 hybrid contribution 0.203 0.951 -1.426 1.726 sum -11.184 -3.428 24.759 27.383 Atomic orbital electron populations 1.21730 0.90263 1.03800 1.03762 1.22512 0.96748 0.95328 0.84298 0.92124 1.22528 0.79003 1.03000 0.99923 1.47206 1.06618 1.66600 1.16033 1.15985 0.84530 0.78522 0.80440 1.90871 1.15802 1.63666 1.81114 1.45276 1.14272 1.62464 1.16352 1.20911 0.91978 0.97888 0.83994 1.18646 0.93624 0.92921 0.92005 1.22210 0.97629 0.99164 1.00671 1.22274 1.00098 0.98217 0.99576 1.21015 0.96636 1.37457 1.00584 0.95458 1.25873 1.01659 0.96583 0.93963 1.70113 1.42108 1.43743 1.02647 0.86326 0.81249 0.79378 0.75634 1.20901 1.24457 1.12541 1.22091 1.00011 0.97776 0.81677 1.22459 0.82297 0.95586 0.95785 1.22118 1.01158 0.95762 0.99292 1.22062 1.01862 0.99807 0.94457 1.22748 0.98988 0.82173 0.98132 1.87961 1.70082 1.25346 1.47101 1.22589 0.99185 0.95754 0.82361 1.88041 1.19500 1.77046 1.43348 0.91397 0.89029 0.91160 0.88512 0.89174 0.75581 0.94352 0.94250 0.91700 0.93467 0.94046 0.93572 0.94509 0.91098 0.92639 0.89593 0.89412 0.91087 0.92228 0.89802 0.91373 0.92218 0.87393 0.86993 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.57 71.98 0.69 -0.88 16 2 C 0.07 1.11 3.00 30.54 0.09 1.20 16 3 H 0.06 1.05 6.19 -2.38 -0.01 1.03 16 4 C 0.08 1.36 5.91 86.20 0.51 1.87 16 5 N -0.63 -15.07 2.60 -836.36 -2.18 -17.25 16 6 C 0.70 22.99 8.31 179.05 1.49 24.48 16 7 O -0.63 -26.32 15.85 -3.99 -0.06 -26.39 16 8 N -0.73 -22.72 4.90 -478.52 -2.35 -25.06 16 9 C 0.18 7.10 4.49 86.38 0.39 7.49 16 10 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 11 C -0.14 -5.14 7.52 71.98 0.54 -4.60 16 12 C -0.14 -5.30 7.52 71.98 0.54 -4.76 16 13 C -0.52 -28.46 8.62 25.60 0.22 -28.24 16 14 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 15 C 0.02 0.93 5.32 84.65 0.45 1.38 16 16 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 17 Si 0.95 41.92 22.78 68.60 1.56 43.48 16 18 H -0.28 -12.26 7.10 99.48 0.71 -11.55 16 19 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.20 -7.42 4.65 99.48 0.46 -6.96 16 21 C 0.11 2.29 5.29 86.31 0.46 2.75 16 22 C 0.08 1.45 0.71 -10.70 -0.01 1.44 16 23 C -0.15 -2.73 4.33 30.69 0.13 -2.60 16 24 C -0.14 -2.21 5.98 30.69 0.18 -2.02 16 25 C 0.06 0.79 6.84 72.01 0.49 1.28 16 26 O -0.39 -7.11 10.70 -142.15 -1.52 -8.63 16 27 C 0.08 1.23 5.81 71.98 0.42 1.65 16 28 O -0.36 -6.82 9.30 -142.15 -1.32 -8.14 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.10 1.47 5.65 -2.39 -0.01 1.45 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.40 10.13 3.81 -92.71 -0.35 9.78 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.06 1.80 7.14 -2.39 -0.02 1.79 16 38 H 0.05 1.84 4.31 -2.39 -0.01 1.82 16 39 H 0.04 1.56 8.12 -2.39 -0.02 1.55 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.39 2.25 -2.38 -0.01 1.39 16 42 H 0.07 1.97 6.86 -2.39 -0.02 1.95 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 2.15 7.12 -2.39 -0.02 2.13 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.29 6.03 -2.39 -0.01 1.28 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.16 7.84 -2.39 -0.02 1.14 16 50 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 51 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 53 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.28 384.27 1.31 -71.97 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.31 Total: 26.58 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.57 Total: 1.64 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.22 Total: -100.52 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.91 Total: -43.15 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.56 Total: 43.48 kcal Total: -73.28 1.31 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.128 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds