Wall clock time and date at job start Wed Apr 1 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.55613 * 2 1 4 4 C 1.53293 * 109.51006 * 120.12630 * 2 1 3 5 5 N 1.47160 * 108.41331 * 172.32745 * 4 2 1 6 6 C 1.34770 * 120.98973 * 129.39243 * 5 4 2 7 7 O 1.21594 * 120.00069 * 175.00894 * 6 5 4 8 8 N 1.34778 * 120.00195 * 355.01157 * 6 5 4 9 9 C 1.46500 * 120.00086 * 185.08242 * 8 6 5 10 10 C 1.52998 * 109.46744 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47609 * 299.99668 * 10 9 8 12 12 C 1.53002 * 109.47404 * 60.00259 * 10 9 8 13 13 C 1.50703 * 109.46837 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00093 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00135 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99547 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00113 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47158 * 59.99814 * 17 15 13 19 19 H 1.48502 * 109.46962 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46922 * 299.99531 * 17 15 13 21 21 C 1.47166 * 118.02186 * 309.37230 * 5 4 2 22 22 C 1.53200 * 108.41419 * 50.39562 * 21 5 4 23 23 C 1.53091 * 109.42355 * 187.92080 * 22 21 5 24 24 C 1.53199 * 109.03668 * 183.24879 * 23 22 21 25 25 C 1.53095 * 109.14083 * 56.89039 * 24 23 22 26 26 O 1.42901 * 109.43916 * 302.34239 * 25 24 23 27 27 C 1.42921 * 114.09149 * 61.18657 * 26 25 24 28 28 O 1.42861 * 109.41951 * 307.95228 * 22 21 5 29 29 H 1.09005 * 109.47588 * 299.87450 * 1 2 3 30 30 H 1.09000 * 109.47111 * 59.86967 * 1 2 3 31 31 H 1.08998 * 109.47334 * 179.86875 * 1 2 3 32 32 H 1.09001 * 109.68417 * 52.59267 * 4 2 1 33 33 H 1.08995 * 109.68643 * 292.07112 * 4 2 1 34 34 H 0.97001 * 119.99461 * 5.07470 * 8 6 5 35 35 H 1.09005 * 109.46892 * 299.99696 * 9 8 6 36 36 H 1.08994 * 109.47224 * 59.99946 * 9 8 6 37 37 H 1.09001 * 109.46871 * 60.00069 * 11 10 9 38 38 H 1.09000 * 109.47305 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47156 * 300.00834 * 11 10 9 40 40 H 1.09005 * 109.47340 * 59.99361 * 12 10 9 41 41 H 1.09000 * 109.47430 * 179.97438 * 12 10 9 42 42 H 1.09001 * 109.46680 * 299.99688 * 12 10 9 43 43 H 0.97003 * 119.99675 * 180.02562 * 16 15 13 44 44 H 1.09000 * 109.67865 * 170.13096 * 21 5 4 45 45 H 1.09007 * 109.67537 * 290.62996 * 21 5 4 46 46 H 1.08998 * 109.54351 * 303.11403 * 23 22 21 47 47 H 1.08999 * 109.54445 * 63.38459 * 23 22 21 48 48 H 1.09000 * 109.52552 * 176.78661 * 24 23 22 49 49 H 1.09001 * 109.52458 * 296.99118 * 24 23 22 50 50 H 1.09000 * 109.48068 * 62.33496 * 25 24 23 51 51 H 1.08998 * 109.47498 * 182.35115 * 25 24 23 52 52 H 1.09004 * 109.47698 * 178.99223 * 27 26 25 53 53 H 1.08996 * 109.48458 * 58.96553 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5015 -0.8744 1.1354 6 6 4.3181 -0.5003 2.1402 7 8 5.5126 -0.7145 2.0646 8 7 3.8107 0.1113 3.2288 9 6 4.7086 0.6176 4.2697 10 6 3.8836 1.2624 5.3853 11 6 3.0652 2.4203 4.8105 12 6 2.9394 0.2206 5.9888 13 6 4.8072 1.7827 6.4564 14 1 5.8757 1.6649 6.3522 15 6 4.2882 2.4083 7.5701 16 7 2.9870 2.5513 7.6973 17 14 5.4330 3.0538 8.8975 18 1 6.3490 4.0655 8.3121 19 1 4.6323 3.6785 9.9810 20 1 6.2278 1.9302 9.4551 21 6 4.0429 -1.4447 -0.1085 22 6 3.4318 -0.6896 -1.2932 23 6 3.8229 -1.3878 -2.5983 24 6 3.2760 -0.5808 -3.7801 25 6 3.8123 0.8510 -3.7013 26 8 3.4370 1.4313 -2.4505 27 6 3.9588 0.7466 -1.3097 28 8 2.0090 -0.6772 -1.1655 29 1 -0.3634 0.5119 0.8911 30 1 -0.3633 0.5159 -0.8888 31 1 -0.3634 -1.0276 -0.0024 32 1 1.5769 -1.7085 1.3200 33 1 1.8011 -0.1410 2.1378 34 1 2.8510 0.2163 3.3229 35 1 5.2920 -0.2072 4.6790 36 1 5.3810 1.3601 3.8400 37 1 2.3972 2.0436 4.0359 38 1 2.4778 2.8799 5.6053 39 1 3.7379 3.1624 4.3805 40 1 3.5225 -0.6043 6.3983 41 1 2.3520 0.6799 6.7838 42 1 2.2714 -0.1561 5.2142 43 1 2.6218 2.9918 8.4807 44 1 5.1271 -1.3332 -0.1221 45 1 3.7819 -2.5012 -0.1720 46 1 4.9089 -1.4472 -2.6688 47 1 3.3996 -2.3921 -2.6156 48 1 3.5982 -1.0396 -4.7148 49 1 2.1869 -0.5647 -3.7374 50 1 4.8991 0.8371 -3.7839 51 1 3.3934 1.4413 -4.5162 52 1 3.6428 1.2601 -0.4016 53 1 5.0475 0.7337 -1.3600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948307.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:34 Heat of formation + Delta-G solvation = -132.901210 kcal Electronic energy + Delta-G solvation = -32457.177010 eV Core-core repulsion = 28328.451723 eV Total energy + Delta-G solvation = -4128.725288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.12957 -40.67347 -38.82718 -38.15305 -35.84393 -35.31097 -34.81186 -33.12837 -32.64397 -31.09268 -28.15875 -27.58025 -27.55756 -27.25397 -26.33216 -25.91097 -23.60908 -22.52899 -21.22558 -20.70652 -20.56832 -19.36399 -17.96758 -17.84091 -17.55479 -17.25444 -16.77938 -16.69877 -16.52911 -16.19326 -15.77220 -15.59019 -15.33310 -15.06540 -14.83219 -14.70991 -14.46758 -14.08025 -13.93092 -13.67339 -13.54782 -13.32226 -13.20656 -13.11936 -13.00376 -12.94374 -12.68807 -12.62740 -12.60616 -12.26324 -12.20631 -12.12782 -12.03456 -11.59742 -11.53070 -11.50118 -11.32252 -11.23483 -11.03374 -10.72641 -10.41926 -10.38558 -10.06809 -9.41354 -8.02555 -6.18149 1.44416 1.45013 1.49487 1.54147 2.06429 2.45318 2.49969 2.87168 2.90961 3.21225 3.50763 3.51522 3.66103 3.79602 3.96115 4.04969 4.05534 4.18911 4.23944 4.35158 4.40152 4.41672 4.50909 4.51630 4.59002 4.62592 4.68672 4.69762 4.74379 4.86358 4.92831 4.96521 5.00655 5.01963 5.03236 5.07547 5.11598 5.18109 5.28806 5.34327 5.35161 5.36004 5.57635 5.66007 5.66889 5.83195 6.05051 6.13898 6.20415 6.26266 6.42971 6.85469 6.91404 7.49095 7.49818 8.96386 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002730 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.479968 B =10254.519456 C =10534.585965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 H 0.053 0.947 4 C 0.079 3.921 5 N -0.632 5.632 6 C 0.701 3.299 7 O -0.633 6.633 8 N -0.726 5.726 9 C 0.167 3.833 10 C 0.054 3.946 11 C -0.118 4.118 12 C -0.119 4.119 13 C -0.531 4.531 14 H 0.045 0.955 15 C 0.030 3.970 16 N -0.898 5.898 17 Si 0.945 3.055 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.109 3.891 22 C 0.081 3.919 23 C -0.106 4.106 24 C -0.143 4.143 25 C 0.048 3.952 26 O -0.394 6.394 27 C 0.043 3.957 28 O -0.360 6.360 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.403 0.597 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.107 0.893 52 H 0.077 0.923 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -7.542 -22.568 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.071 0.929 4 C -0.044 4.044 5 N -0.369 5.369 6 C 0.403 3.597 7 O -0.515 6.515 8 N -0.383 5.383 9 C 0.043 3.957 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.177 4.177 13 C -0.569 4.569 14 H 0.063 0.937 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.203 1.203 21 C -0.014 4.014 22 C 0.040 3.960 23 C -0.143 4.143 24 C -0.181 4.181 25 C -0.028 4.028 26 O -0.312 6.312 27 C -0.034 4.034 28 O -0.279 6.279 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.242 0.758 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.125 0.875 52 H 0.095 0.905 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.622 -7.514 -22.580 24.452 hybrid contribution 0.768 0.492 1.454 1.716 sum -4.854 -7.021 -21.126 22.785 Atomic orbital electron populations 1.21708 0.90116 1.03880 1.03672 1.22543 0.96911 0.94938 0.84188 0.92854 1.22603 0.79106 1.02893 0.99756 1.47297 1.06654 1.66997 1.15996 1.16038 0.84643 0.78419 0.80613 1.90849 1.15609 1.63479 1.81555 1.45389 1.10954 1.61446 1.20510 1.21164 0.91755 0.95845 0.86976 1.18340 0.93077 0.92519 0.90772 1.21651 0.98697 0.98411 0.98840 1.21663 0.98634 0.97086 1.00328 1.21236 0.92795 1.38039 1.04846 0.93709 1.25432 0.96287 0.95853 0.99423 1.69892 1.11315 1.43324 1.29160 0.85827 0.79242 0.78535 0.79263 1.20277 1.20757 1.20304 1.22164 1.00031 0.97904 0.81334 1.22419 0.82315 0.95044 0.96192 1.21621 1.02055 0.99969 0.90688 1.22076 1.01822 0.95251 0.98940 1.22879 0.99610 0.94842 0.85481 1.87941 1.75188 1.53548 1.14573 1.22990 0.98041 0.93095 0.89306 1.87973 1.19538 1.76815 1.43555 0.89372 0.91395 0.90726 0.88834 0.89040 0.75822 0.94572 0.94596 0.94774 0.91716 0.96381 0.96351 0.91688 0.94759 0.92968 0.89322 0.89295 0.88893 0.89123 0.88194 0.91341 0.92374 0.87511 0.90532 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.57 71.98 0.69 -1.36 16 2 C 0.07 1.47 3.03 30.69 0.09 1.56 16 3 H 0.05 1.26 6.22 -2.39 -0.01 1.25 16 4 C 0.08 1.68 5.92 86.35 0.51 2.19 16 5 N -0.63 -17.17 2.60 -835.47 -2.18 -19.35 16 6 C 0.70 25.21 8.31 179.06 1.49 26.70 16 7 O -0.63 -27.64 15.85 -4.01 -0.06 -27.70 16 8 N -0.73 -26.10 4.87 -478.54 -2.33 -28.43 16 9 C 0.17 7.26 4.51 86.38 0.39 7.65 16 10 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 11 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 12 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 13 C -0.53 -28.13 8.01 25.60 0.21 -27.92 16 14 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 15 C 0.03 1.58 5.15 84.66 0.44 2.01 16 16 N -0.90 -47.61 9.35 21.45 0.20 -47.41 16 17 Si 0.94 42.56 29.54 68.60 2.03 44.59 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.11 2.54 5.28 86.32 0.46 2.99 16 22 C 0.08 1.65 0.70 -10.70 -0.01 1.65 16 23 C -0.11 -1.53 5.03 30.69 0.15 -1.38 16 24 C -0.14 -1.90 5.99 30.69 0.18 -1.71 16 25 C 0.05 0.76 6.84 72.01 0.49 1.25 16 26 O -0.39 -9.38 10.70 -142.24 -1.52 -10.90 16 27 C 0.04 1.03 5.11 71.98 0.37 1.40 16 28 O -0.36 -7.67 9.30 -142.24 -1.32 -8.99 16 29 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.89 5.66 -2.39 -0.01 1.88 16 34 H 0.40 12.68 3.67 -92.71 -0.34 12.34 16 35 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 38 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 42 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 43 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 44 H 0.09 2.32 7.11 -2.39 -0.02 2.31 16 45 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 1.10 7.84 -2.39 -0.02 1.08 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.08 2.15 6.08 -2.38 -0.01 2.13 16 53 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.40 394.28 1.96 -62.44 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.56 Total: 27.62 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.59 Total: 8.12 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -4.31 Total: -95.18 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.91 Total: -47.59 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.40 1.96 -62.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948307.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.459 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds