Wall clock time and date at job start Tue Mar 31 2020 23:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47216 * 2 1 4 4 C 1.53007 * 109.46884 * 239.99815 * 2 1 3 5 5 C 1.52997 * 109.46956 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47180 * 59.99836 * 5 4 2 7 7 C 1.52993 * 109.47352 * 300.00097 * 6 5 4 8 8 C 1.52991 * 109.47130 * 120.00164 * 2 1 3 9 9 H 1.09002 * 109.47602 * 60.00336 * 8 2 1 10 10 O 1.42896 * 109.47474 * 299.99825 * 8 2 1 11 11 C 1.42898 * 114.00467 * 149.99692 * 10 8 2 12 12 C 1.53001 * 109.47205 * 180.02562 * 11 10 8 13 13 N 1.46500 * 109.47060 * 65.00256 * 12 11 10 14 14 C 1.34774 * 120.00263 * 179.97438 * 13 12 11 15 15 O 1.21592 * 120.00071 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00312 * 180.02562 * 14 13 12 17 17 C 1.47418 * 125.64912 * 359.69419 * 16 14 13 18 18 C 1.55127 * 104.72824 * 155.81539 * 17 16 14 19 19 C 1.55163 * 101.48155 * 37.29528 * 18 17 16 20 20 O 1.42901 * 110.71906 * 82.69967 * 19 18 17 21 21 C 1.50698 * 110.71991 * 205.96972 * 19 18 17 22 22 H 1.08004 * 120.00124 * 118.58197 * 21 19 18 23 23 C 1.37878 * 119.99985 * 298.58209 * 21 19 18 24 24 N 1.31520 * 119.99990 * 183.40558 * 23 21 19 25 25 Si 1.86791 * 120.00132 * 3.40016 * 23 21 19 26 26 H 1.48503 * 109.47395 * 84.84158 * 25 23 21 27 27 H 1.48501 * 109.47359 * 204.84059 * 25 23 21 28 28 H 1.48504 * 109.47476 * 324.84020 * 25 23 21 29 29 C 1.47028 * 125.65026 * 180.02562 * 16 14 13 30 30 H 1.08997 * 109.47149 * 299.99753 * 1 2 3 31 31 H 1.08998 * 109.47361 * 60.00476 * 1 2 3 32 32 H 1.09004 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47009 * 60.00074 * 4 2 1 34 34 H 1.08994 * 109.47345 * 300.00106 * 4 2 1 35 35 H 1.09004 * 109.47143 * 300.00311 * 5 4 2 36 36 H 1.08997 * 109.47220 * 180.02562 * 5 4 2 37 37 H 1.09005 * 109.46924 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.46695 * 60.00200 * 6 5 4 39 39 H 1.08994 * 109.47202 * 299.99644 * 7 6 5 40 40 H 1.09001 * 109.47051 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.46824 * 60.00736 * 11 10 8 42 42 H 1.08995 * 109.47319 * 300.00332 * 11 10 8 43 43 H 1.08999 * 109.47204 * 185.00489 * 12 11 10 44 44 H 1.09006 * 109.47062 * 305.00388 * 12 11 10 45 45 H 0.96997 * 119.99721 * 0.02562 * 13 12 11 46 46 H 1.09004 * 110.36786 * 274.74922 * 17 16 14 47 47 H 1.09006 * 110.36740 * 37.06732 * 17 16 14 48 48 H 1.09000 * 111.19508 * 279.19321 * 18 17 16 49 49 H 1.09000 * 110.94469 * 155.28548 * 18 17 16 50 50 H 0.96705 * 113.99969 * 185.02708 * 20 19 18 51 51 H 0.96995 * 120.00003 * 180.02562 * 24 23 21 52 52 H 1.08995 * 109.87960 * 300.44427 * 29 16 14 53 53 H 1.08998 * 109.87918 * 61.45003 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 6 3.5706 -0.7204 1.2488 8 6 2.0400 -0.7212 1.2491 9 1 1.6768 -1.7490 1.2492 10 8 1.5638 -0.0477 2.4160 11 6 1.3700 -0.9042 3.5432 12 6 0.8611 -0.0807 4.7280 13 7 -0.4662 0.4553 4.4159 14 6 -1.1149 1.2168 5.3191 15 8 -0.5984 1.4594 6.3928 16 7 -2.3360 1.7095 5.0322 17 6 -3.0728 1.5002 3.7726 18 6 -4.5646 1.6942 4.1513 19 6 -4.4735 2.8492 5.1834 20 8 -4.4085 4.1142 4.5220 21 6 -5.6387 2.8043 6.1380 22 1 -5.4658 2.6651 7.1950 23 6 -6.9255 2.9409 5.6621 24 7 -7.9376 2.9690 6.5015 25 14 -7.2314 3.0863 3.8251 26 1 -7.3023 1.7293 3.2261 27 1 -8.5136 3.7981 3.5915 28 1 -6.1214 3.8472 3.1971 29 6 -3.1512 2.5506 5.9209 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -0.2075 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3070 -1.2498 36 1 3.9333 -1.2342 -2.1398 37 1 5.1706 -1.4416 -0.0009 38 1 3.7176 -2.4694 -0.0001 39 1 3.9336 0.3074 1.2486 40 1 3.9340 -1.2342 2.1388 41 1 2.3163 -1.3759 3.8080 42 1 0.6381 -1.6726 3.2942 43 1 0.7978 -0.7159 5.6116 44 1 1.5492 0.7424 4.9207 45 1 -0.8783 0.2615 3.5595 46 1 -2.7690 2.2365 3.0285 47 1 -2.9051 0.4902 3.3984 48 1 -4.9755 0.7938 4.6079 49 1 -5.1516 1.9920 3.2825 50 1 -4.2732 4.8634 5.1184 51 1 -8.8429 3.0647 6.1666 52 1 -3.3569 2.0180 6.8494 53 1 -2.6255 3.4808 6.1360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591912839.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:48 Heat of formation + Delta-G solvation = -159.777845 kcal Electronic energy + Delta-G solvation = -31011.400150 eV Core-core repulsion = 26881.509404 eV Total energy + Delta-G solvation = -4129.890746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.37459 -40.40694 -39.37371 -37.74229 -36.15370 -35.57723 -34.50275 -33.47001 -32.11803 -31.07642 -30.12579 -29.54529 -27.10247 -26.86558 -24.33622 -23.66804 -23.04119 -22.15954 -21.65707 -21.09977 -20.73418 -19.62409 -18.96600 -17.95439 -17.44425 -16.99255 -16.80086 -16.54942 -16.21390 -16.19194 -15.54473 -15.23784 -15.17425 -15.10644 -14.94916 -14.76173 -14.40340 -14.18671 -14.04286 -14.01327 -13.86058 -13.54665 -13.21671 -13.11727 -13.08063 -12.83781 -12.77072 -12.51507 -12.37746 -12.33556 -12.15385 -11.95293 -11.82989 -11.74433 -11.46564 -11.30025 -11.22941 -11.12281 -10.95528 -10.78727 -10.36475 -10.28004 -10.24730 -9.46811 -8.35038 -6.51045 1.38887 1.48048 1.60460 1.70212 2.10850 2.41314 2.63716 3.00549 3.01766 3.54795 3.69737 3.76730 3.80611 3.93747 4.02885 4.05566 4.18222 4.23378 4.24264 4.30795 4.33618 4.42920 4.46200 4.53425 4.53918 4.57468 4.58960 4.67795 4.78645 4.80387 4.84883 4.94283 4.95518 5.03345 5.07197 5.08729 5.09671 5.17984 5.20194 5.30306 5.33766 5.40308 5.43694 5.45475 5.49959 5.52118 5.56304 6.06954 6.08774 6.34437 6.59770 6.97829 7.12173 7.30088 7.52254 8.79207 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002470 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.523213 B =11331.736835 C =12528.230443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.141 4.141 8 C 0.095 3.905 9 H 0.071 0.929 10 O -0.395 6.395 11 C 0.058 3.942 12 C 0.140 3.860 13 N -0.725 5.725 14 C 0.714 3.286 15 O -0.641 6.641 16 N -0.631 5.631 17 C 0.112 3.888 18 C -0.127 4.127 19 C 0.218 3.782 20 O -0.572 6.572 21 C -0.552 4.552 22 H 0.035 0.965 23 C 0.035 3.965 24 N -0.937 5.937 25 Si 0.940 3.060 26 H -0.265 1.265 27 H -0.309 1.309 28 H -0.213 1.213 29 C 0.123 3.877 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.408 0.592 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.376 0.624 51 H 0.268 0.732 52 H 0.045 0.955 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.171 -12.198 -19.377 32.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.178 4.178 8 C 0.037 3.963 9 H 0.089 0.911 10 O -0.315 6.315 11 C -0.018 4.018 12 C 0.017 3.983 13 N -0.382 5.382 14 C 0.416 3.584 15 O -0.523 6.523 16 N -0.368 5.368 17 C -0.010 4.010 18 C -0.165 4.165 19 C 0.177 3.823 20 O -0.380 6.380 21 C -0.589 4.589 22 H 0.053 0.947 23 C -0.165 4.165 24 N -0.575 5.575 25 Si 0.765 3.235 26 H -0.190 1.190 27 H -0.238 1.238 28 H -0.135 1.135 29 C -0.001 4.001 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.245 0.755 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.225 0.775 51 H 0.077 0.923 52 H 0.063 0.937 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 23.372 -12.239 -19.087 32.563 hybrid contribution -0.802 0.443 0.387 0.994 sum 22.571 -11.796 -18.700 31.595 Atomic orbital electron populations 1.21768 0.94666 1.02030 1.01786 1.21192 0.96180 0.99646 0.93607 0.92069 1.21569 0.95651 1.00911 0.96548 1.21582 0.95418 1.00795 0.98237 1.21485 1.00775 0.99422 0.93498 1.22039 0.95524 1.01252 0.99027 1.22242 0.93305 0.96010 0.84714 0.91103 1.87965 1.86768 1.36149 1.20582 1.22785 1.01282 0.92357 0.85396 1.21313 0.81907 0.97797 0.97317 1.44910 1.19847 1.54463 1.18983 1.15638 0.79820 0.79144 0.83796 1.90857 1.68680 1.66629 1.26155 1.47602 1.16388 1.53812 1.19026 1.22405 0.90447 1.02407 0.85698 1.23057 0.96021 0.98424 0.98981 1.19802 0.89864 0.82966 0.89660 1.86440 1.95417 1.16795 1.39303 1.21408 0.91200 1.52366 0.93973 0.94707 1.25810 0.95350 0.92193 1.03157 1.70070 0.99988 1.50002 1.37466 0.86072 0.77568 0.79454 0.80398 1.19007 1.23761 1.13524 1.22318 0.91275 0.93443 0.93086 0.93089 0.92465 0.92145 0.91150 0.91128 0.92479 0.90846 0.91212 0.91203 0.92445 0.91427 0.89622 0.91034 0.90058 0.92501 0.75503 0.90270 0.88299 0.90046 0.90128 0.77519 0.92292 0.93674 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.09 -1.17 2.46 -10.79 -0.03 -1.19 16 3 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.07 5.20 30.60 0.16 -0.91 16 5 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 6 C -0.11 -1.01 5.92 30.59 0.18 -0.83 16 7 C -0.14 -1.66 5.54 30.61 0.17 -1.49 16 8 C 0.09 1.23 2.05 30.61 0.06 1.30 16 9 H 0.07 0.77 7.79 -2.39 -0.02 0.75 16 10 O -0.39 -6.82 9.26 -148.98 -1.38 -8.19 16 11 C 0.06 0.82 5.88 71.98 0.42 1.25 16 12 C 0.14 3.01 6.06 86.38 0.52 3.53 16 13 N -0.72 -18.90 5.46 -478.53 -2.61 -21.52 16 14 C 0.71 26.04 8.49 179.06 1.52 27.56 16 15 O -0.64 -28.65 16.67 -4.01 -0.07 -28.72 16 16 N -0.63 -23.13 3.32 -829.33 -2.76 -25.89 16 17 C 0.11 3.41 6.58 86.93 0.57 3.98 16 18 C -0.13 -4.82 4.83 32.06 0.15 -4.66 16 19 C 0.22 9.61 0.67 -10.35 -0.01 9.61 16 20 O -0.57 -23.86 10.45 -148.98 -1.56 -25.42 16 21 C -0.55 -30.21 8.81 25.60 0.23 -29.99 16 22 H 0.03 2.15 7.82 -2.91 -0.02 2.13 16 23 C 0.04 1.97 5.47 84.65 0.46 2.43 16 24 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 25 Si 0.94 42.72 23.88 68.60 1.64 44.36 16 26 H -0.26 -11.16 7.08 99.48 0.70 -10.46 16 27 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.21 -9.11 5.50 99.48 0.55 -8.56 16 29 C 0.12 5.26 6.21 86.73 0.54 5.79 16 30 H 0.05 0.84 7.68 -2.39 -0.02 0.83 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 41 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 42 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.41 8.74 6.95 -92.71 -0.64 8.10 16 46 H 0.08 2.24 8.14 -2.38 -0.02 2.23 16 47 H 0.10 2.25 7.29 -2.38 -0.02 2.23 16 48 H 0.08 3.19 8.04 -2.39 -0.02 3.17 16 49 H 0.08 2.98 5.00 -2.39 -0.01 2.97 16 50 H 0.38 13.96 9.08 -74.05 -0.67 13.29 16 51 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 52 H 0.04 2.14 7.66 -2.39 -0.02 2.12 16 53 H 0.05 2.30 8.06 -2.39 -0.02 2.28 16 Total: -1.00 -72.81 405.18 -1.23 -74.04 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.58 Total: 33.92 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.79 Total: 14.09 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -5.07 Total: -104.07 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -3.00 Total: -62.34 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.64 Total: 44.36 kcal Total: -72.81 -1.23 -74.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591912839.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.742 kcal (2) G-P(sol) polarization free energy of solvation -72.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds