Wall clock time and date at job start Tue Mar 31 2020 23:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47555 * 2 1 4 4 C 1.52998 * 109.47108 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47380 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47142 * 59.99983 * 5 4 2 7 7 C 1.53000 * 109.47264 * 299.99985 * 6 5 4 8 8 C 1.53000 * 109.47029 * 59.99946 * 7 6 5 9 9 H 1.08999 * 109.47479 * 180.02562 * 8 7 6 10 10 O 1.42896 * 109.46912 * 60.00093 * 8 7 6 11 11 C 1.42904 * 114.00313 * 90.00312 * 10 8 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 8 13 13 N 1.46505 * 109.47212 * 64.99584 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21584 * 120.00541 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.47425 * 125.65022 * 0.02562 * 16 14 13 18 18 C 1.54907 * 104.83213 * 204.09122 * 17 16 14 19 19 C 1.55164 * 101.58446 * 322.99142 * 18 17 16 20 20 O 1.42890 * 110.71986 * 277.13737 * 19 18 17 21 21 C 1.50696 * 110.71840 * 154.03848 * 19 18 17 22 22 H 1.08001 * 120.00613 * 0.02562 * 21 19 18 23 23 C 1.37879 * 120.00005 * 180.02562 * 21 19 18 24 24 N 1.31518 * 119.99965 * 0.02562 * 23 21 19 25 25 Si 1.86799 * 120.00228 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47181 * 89.99912 * 25 23 21 27 27 H 1.48504 * 109.47079 * 210.00058 * 25 23 21 28 28 H 1.48498 * 109.47065 * 329.99824 * 25 23 21 29 29 C 1.47027 * 125.64746 * 179.72174 * 16 14 13 30 30 H 1.09001 * 109.46714 * 299.99813 * 1 2 3 31 31 H 1.08994 * 109.47176 * 59.99681 * 1 2 3 32 32 H 1.08989 * 109.47224 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47107 * 60.00064 * 4 2 1 34 34 H 1.08999 * 109.47296 * 300.00387 * 4 2 1 35 35 H 1.09002 * 109.46803 * 299.99559 * 5 4 2 36 36 H 1.09001 * 109.46986 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.47176 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47370 * 60.00468 * 6 5 4 39 39 H 1.09002 * 109.46876 * 300.00544 * 7 6 5 40 40 H 1.08992 * 109.47642 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.46993 * 59.99365 * 11 10 8 42 42 H 1.09004 * 109.46505 * 300.00140 * 11 10 8 43 43 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 44 44 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 45 45 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 46 46 H 1.08998 * 110.36667 * 322.93436 * 17 16 14 47 47 H 1.09004 * 110.36139 * 85.25503 * 17 16 14 48 48 H 1.08998 * 111.00440 * 81.06555 * 18 17 16 49 49 H 1.09005 * 111.00731 * 204.88087 * 18 17 16 50 50 H 0.96706 * 113.99769 * 179.97438 * 20 19 18 51 51 H 0.96999 * 120.00410 * 180.02562 * 24 23 21 52 52 H 1.09005 * 109.87847 * 298.39299 * 29 16 14 53 53 H 1.09000 * 109.88170 * 59.55293 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5696 -0.7222 1.2495 8 6 2.0396 -0.7216 1.2492 9 1 1.6762 -0.2074 2.1390 10 8 1.5628 -2.0687 1.2489 11 6 1.3685 -2.6169 2.5543 12 6 0.8602 -4.0549 2.4331 13 7 1.8938 -4.8876 1.8129 14 6 1.6669 -6.1996 1.6048 15 8 0.6044 -6.6922 1.9313 16 7 2.6180 -6.9658 1.0347 17 6 3.9454 -6.5007 0.5927 18 6 4.3782 -7.5138 -0.4963 19 6 3.8199 -8.8437 0.0759 20 8 4.7206 -9.3983 1.0367 21 6 3.5516 -9.8296 -1.0318 22 1 3.7526 -9.5576 -2.0575 23 6 3.0495 -11.0792 -0.7359 24 7 2.8043 -11.4105 0.5131 25 14 2.7176 -12.3016 -2.1088 26 1 3.9335 -13.1199 -2.3477 27 1 1.5921 -13.1891 -1.7200 28 1 2.3631 -11.5676 -3.3500 29 6 2.5060 -8.4051 0.7562 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0275 0.0005 33 1 1.6766 -0.2073 -2.1393 34 1 1.6766 -1.7489 -1.2493 35 1 3.9336 0.3057 -1.2488 36 1 3.9332 -1.2353 -2.1392 37 1 5.1695 -1.4435 0.0006 38 1 3.7158 -2.4710 0.0000 39 1 3.9332 0.3053 1.2496 40 1 3.9328 -1.2360 2.1394 41 1 0.6368 -2.0167 3.0951 42 1 2.3147 -2.6107 3.0953 43 1 -0.0385 -4.0719 1.8165 44 1 0.6278 -4.4428 3.4249 45 1 2.7416 -4.4946 1.5527 46 1 3.8751 -5.4979 0.1715 47 1 4.6488 -6.5151 1.4253 48 1 3.9174 -7.2772 -1.4553 49 1 5.4639 -7.5515 -0.5856 50 1 4.4178 -10.2306 1.4250 51 1 2.4514 -12.2896 0.7214 52 1 2.3678 -8.9533 1.6882 53 1 1.6650 -8.5889 0.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591912841.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:56 Heat of formation + Delta-G solvation = -167.735809 kcal Electronic energy + Delta-G solvation = -31517.746057 eV Core-core repulsion = 27387.510228 eV Total energy + Delta-G solvation = -4130.235829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.27649 -40.46297 -39.17358 -37.42737 -36.08636 -35.42814 -34.16566 -33.42728 -31.97563 -31.06465 -30.00768 -29.35141 -27.06432 -26.80356 -24.45442 -23.54932 -23.19660 -22.10700 -21.43829 -21.05138 -20.48208 -19.28591 -18.89118 -17.57079 -17.42205 -17.02547 -16.76354 -16.49576 -16.30081 -16.14533 -15.49292 -15.35071 -15.09555 -14.78628 -14.74065 -14.51929 -14.47724 -14.15296 -13.82789 -13.72627 -13.52285 -13.48576 -13.30278 -12.93004 -12.87043 -12.81720 -12.54694 -12.41528 -12.34915 -12.30545 -12.28595 -12.13748 -12.08985 -11.69524 -11.38107 -11.31253 -11.23488 -11.18939 -10.78460 -10.63551 -10.30370 -10.25450 -10.20696 -9.38777 -8.26913 -6.42758 1.41263 1.43354 1.53153 1.69495 2.15089 2.37933 2.73268 2.99435 3.10329 3.75631 3.80853 3.87786 3.92569 4.03094 4.10330 4.18318 4.21851 4.29490 4.33006 4.37818 4.46032 4.51277 4.58594 4.60804 4.63585 4.66101 4.69936 4.71215 4.84776 4.87419 4.97836 5.02763 5.03165 5.12338 5.12854 5.16161 5.24552 5.26978 5.36401 5.37568 5.40754 5.47465 5.48851 5.50701 5.52259 5.67565 5.75907 6.01755 6.18372 6.40407 6.63885 7.06706 7.29212 7.38722 7.57484 8.79432 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.002609 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.918200 B =10727.872593 C =11191.790489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.093 0.907 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.091 3.909 9 H 0.073 0.927 10 O -0.386 6.386 11 C 0.060 3.940 12 C 0.141 3.859 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.647 6.647 16 N -0.635 5.635 17 C 0.111 3.889 18 C -0.110 4.110 19 C 0.235 3.765 20 O -0.589 6.589 21 C -0.557 4.557 22 H 0.068 0.932 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.965 3.035 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.268 1.268 29 C 0.139 3.861 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.408 0.592 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.378 0.622 51 H 0.271 0.729 52 H 0.025 0.975 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 26.968 1.583 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.111 0.889 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.176 4.176 8 C 0.034 3.966 9 H 0.091 0.909 10 O -0.306 6.306 11 C -0.017 4.017 12 C 0.017 3.983 13 N -0.380 5.380 14 C 0.410 3.590 15 O -0.530 6.530 16 N -0.371 5.371 17 C -0.011 4.011 18 C -0.148 4.148 19 C 0.194 3.806 20 O -0.398 6.398 21 C -0.595 4.595 22 H 0.086 0.914 23 C -0.176 4.176 24 N -0.557 5.557 25 Si 0.790 3.210 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.193 1.193 29 C 0.015 3.985 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.244 0.756 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.109 0.891 50 H 0.229 0.771 51 H 0.081 0.919 52 H 0.044 0.956 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.246 26.980 1.655 27.059 hybrid contribution -0.519 -1.610 -0.245 1.709 sum 0.728 25.370 1.410 25.420 Atomic orbital electron populations 1.21751 0.95058 1.01501 1.01832 1.21248 0.95863 0.99171 0.93947 0.88857 1.21483 0.95774 1.00235 0.97318 1.21508 0.95274 1.00867 0.97786 1.21413 0.99996 0.99433 0.94502 1.22025 0.95370 1.01834 0.98372 1.22234 0.93450 0.82476 0.98452 0.90859 1.87993 1.86684 1.28722 1.27218 1.22751 1.01400 0.91672 0.85846 1.21297 0.90379 0.88656 0.97994 1.44875 1.20622 1.05762 1.66740 1.15774 0.82590 0.82009 0.78579 1.90838 1.27247 1.74367 1.60517 1.47854 1.16060 1.10150 1.63082 1.22348 0.82914 0.98489 0.97355 1.22715 1.01856 0.92717 0.97509 1.19685 0.83973 0.91088 0.85816 1.86053 1.49954 1.43522 1.60262 1.21856 1.44252 0.99256 0.94164 0.91400 1.25843 0.93605 1.00067 0.98133 1.69685 1.44860 1.22187 1.18994 0.85442 0.77820 0.78456 0.79256 1.19593 1.21117 1.19250 1.22383 1.00728 0.77918 0.97499 0.92103 0.92506 0.93720 0.92118 0.93503 0.91172 0.92639 0.91749 0.92963 0.89888 0.91570 0.89481 0.91267 0.92817 0.90502 0.75557 0.88623 0.91105 0.90070 0.89055 0.77107 0.91947 0.95601 0.95348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.08 -1.09 2.55 -10.79 -0.03 -1.12 16 3 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 4 C -0.11 -1.76 5.06 30.59 0.15 -1.61 16 5 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 6 C -0.12 -1.69 5.78 30.59 0.18 -1.52 16 7 C -0.14 -1.62 5.63 30.59 0.17 -1.45 16 8 C 0.09 1.18 2.35 30.59 0.07 1.25 16 9 H 0.07 0.73 7.79 -2.39 -0.02 0.71 16 10 O -0.39 -6.87 7.91 -148.98 -1.18 -8.05 16 11 C 0.06 0.94 5.88 71.98 0.42 1.36 16 12 C 0.14 3.42 6.06 86.38 0.52 3.94 16 13 N -0.72 -21.45 5.46 -478.53 -2.61 -24.07 16 14 C 0.71 29.69 8.49 179.05 1.52 31.21 16 15 O -0.65 -33.03 16.67 -3.98 -0.07 -33.10 16 16 N -0.63 -27.06 3.33 -829.73 -2.76 -29.82 16 17 C 0.11 3.74 6.56 86.85 0.57 4.31 16 18 C -0.11 -4.28 6.23 31.99 0.20 -4.08 16 19 C 0.23 11.64 0.86 -10.35 -0.01 11.63 16 20 O -0.59 -30.45 13.07 -148.98 -1.95 -32.40 16 21 C -0.56 -29.76 8.12 25.60 0.21 -29.55 16 22 H 0.07 3.52 7.76 -2.91 -0.02 3.49 16 23 C 0.02 1.28 5.28 84.65 0.45 1.73 16 24 N -0.92 -50.85 10.97 21.45 0.24 -50.61 16 25 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 C 0.14 7.18 5.54 86.73 0.48 7.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.81 7.68 -2.39 -0.02 0.79 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.75 7.87 -2.39 -0.02 0.73 16 41 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 42 H 0.07 0.89 7.87 -2.39 -0.02 0.88 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 45 H 0.41 10.05 6.95 -92.71 -0.64 9.40 16 46 H 0.10 2.49 7.30 -2.39 -0.02 2.48 16 47 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.08 3.05 8.03 -2.39 -0.02 3.03 16 49 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 50 H 0.38 20.60 6.98 -74.05 -0.52 20.08 16 51 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 52 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 53 H 0.03 1.62 7.82 -2.39 -0.02 1.60 16 Total: -1.00 -68.81 411.21 -0.83 -69.64 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.27 Total: 42.72 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.74 Total: 20.94 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -5.14 Total: -104.50 kcal Atomic # 8 Polarization: -70.36 SS G_CDS: -3.19 Total: -73.55 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -68.81 -0.83 -69.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591912841.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.098 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds