Wall clock time and date at job start Tue Mar 31 2020 23:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47435 * 2 1 4 4 C 1.52998 * 109.47253 * 239.99575 * 2 1 3 5 5 C 1.53000 * 109.47253 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46736 * 60.00170 * 5 4 2 7 7 C 1.53003 * 109.47423 * 299.99839 * 6 5 4 8 8 C 1.52997 * 109.46535 * 60.00204 * 7 6 5 9 9 H 1.09008 * 109.46487 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47494 * 60.00523 * 8 7 6 11 11 C 1.42896 * 114.00375 * 89.99466 * 10 8 7 12 12 C 1.53002 * 109.47057 * 180.02562 * 11 10 8 13 13 N 1.46502 * 109.47447 * 64.99881 * 12 11 10 14 14 C 1.34776 * 120.00189 * 179.97438 * 13 12 11 15 15 O 1.21579 * 120.00157 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99680 * 179.97438 * 14 13 12 17 17 C 1.47016 * 125.65030 * 0.03309 * 16 14 13 18 18 C 1.54328 * 107.27157 * 181.02079 * 17 16 14 19 19 C 1.55153 * 102.94106 * 22.19263 * 18 17 16 20 20 O 1.42896 * 111.00860 * 82.61000 * 19 18 17 21 21 C 1.50704 * 111.00236 * 206.42616 * 19 18 17 22 22 H 1.08001 * 119.99807 * 354.75093 * 21 19 18 23 23 C 1.37882 * 119.99961 * 174.75431 * 21 19 18 24 24 N 1.31516 * 119.99953 * 4.91774 * 23 21 19 25 25 Si 1.86799 * 119.99840 * 184.92810 * 23 21 19 26 26 H 1.48497 * 109.47403 * 94.99725 * 25 23 21 27 27 H 1.48499 * 109.46677 * 214.99695 * 25 23 21 28 28 H 1.48497 * 109.46935 * 334.99601 * 25 23 21 29 29 C 1.47425 * 125.64372 * 179.72224 * 16 14 13 30 30 H 1.08994 * 109.47053 * 300.00378 * 1 2 3 31 31 H 1.09001 * 109.46681 * 60.00333 * 1 2 3 32 32 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47202 * 60.00411 * 4 2 1 34 34 H 1.08998 * 109.47247 * 300.00540 * 4 2 1 35 35 H 1.09001 * 109.46984 * 300.00661 * 5 4 2 36 36 H 1.08993 * 109.47404 * 180.02562 * 5 4 2 37 37 H 1.09007 * 109.47207 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47506 * 60.00444 * 6 5 4 39 39 H 1.08999 * 109.46855 * 300.00450 * 7 6 5 40 40 H 1.09003 * 109.47013 * 180.02562 * 7 6 5 41 41 H 1.08994 * 109.47395 * 60.00437 * 11 10 8 42 42 H 1.08997 * 109.47122 * 299.99577 * 11 10 8 43 43 H 1.09000 * 109.47231 * 304.99908 * 12 11 10 44 44 H 1.08998 * 109.47312 * 184.99805 * 12 11 10 45 45 H 0.97005 * 119.99223 * 0.02562 * 13 12 11 46 46 H 1.09000 * 109.88244 * 300.43490 * 17 16 14 47 47 H 1.09002 * 109.88713 * 61.44360 * 17 16 14 48 48 H 1.09004 * 110.71562 * 140.55299 * 18 17 16 49 49 H 1.09001 * 110.71742 * 263.64911 * 18 17 16 50 50 H 0.96701 * 114.00470 * 180.02562 * 20 19 18 51 51 H 0.97000 * 119.99628 * 179.97438 * 24 23 21 52 52 H 1.09006 * 110.36239 * 274.74167 * 29 16 14 53 53 H 1.08992 * 110.36930 * 37.06944 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0804 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7209 1.2492 9 1 1.6772 -0.2066 2.1390 10 8 1.5646 -2.0683 1.2497 11 6 1.3713 -2.6161 2.5552 12 6 0.8639 -4.0545 2.4347 13 7 1.8978 -4.8867 1.8144 14 6 1.6718 -6.1991 1.6068 15 8 0.6097 -6.6922 1.9339 16 7 2.6228 -6.9645 1.0356 17 6 3.9456 -6.4998 0.5933 18 6 4.6766 -7.7134 -0.0187 19 6 3.5116 -8.6642 -0.4008 20 8 2.9469 -8.3013 -1.6624 21 6 3.9675 -10.1006 -0.4094 22 1 5.0093 -10.3375 -0.2514 23 6 3.0545 -11.1124 -0.6191 24 7 1.8048 -10.8211 -0.9074 25 14 3.5926 -12.8968 -0.4934 26 1 3.3082 -13.4045 0.8728 27 1 2.8480 -13.7095 -1.4885 28 1 5.0493 -12.9947 -0.7646 29 6 2.5112 -8.4078 0.7568 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -0.2075 -2.1392 34 1 1.6766 -1.7489 -1.2492 35 1 3.9330 0.3070 -1.2497 36 1 3.9334 -1.2342 -2.1396 37 1 5.1705 -1.4408 -0.0001 38 1 3.7175 -2.4694 0.0001 39 1 3.9334 0.3075 1.2487 40 1 3.9345 -1.2336 2.1391 41 1 0.6393 -2.0164 3.0961 42 1 2.3177 -2.6092 3.0959 43 1 -0.0350 -4.0723 1.8185 44 1 0.6321 -4.4423 3.4266 45 1 2.7453 -4.4932 1.5538 46 1 3.8319 -5.7181 -0.1578 47 1 4.5077 -6.1163 1.4449 48 1 5.2396 -7.4180 -0.9041 49 1 5.3329 -8.1791 0.7164 50 1 2.2148 -8.8672 -1.9430 51 1 1.1627 -11.5329 -1.0553 52 1 2.7899 -8.9869 1.6373 53 1 1.4973 -8.6564 0.4435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591912842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:00 Heat of formation + Delta-G solvation = -168.206274 kcal Electronic energy + Delta-G solvation = -31602.363716 eV Core-core repulsion = 27472.107486 eV Total energy + Delta-G solvation = -4130.256230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.24635 -40.46534 -39.12229 -37.42661 -36.03893 -35.41343 -34.18638 -33.43486 -32.02135 -31.07150 -29.97397 -29.33916 -27.06618 -26.79395 -24.43241 -23.53453 -23.18225 -22.11420 -21.45082 -21.01888 -20.48945 -19.28914 -18.83750 -17.51933 -17.37799 -16.97909 -16.76021 -16.57067 -16.28711 -16.15515 -15.49787 -15.38658 -15.16255 -14.84204 -14.66152 -14.52469 -14.47371 -14.01420 -13.78792 -13.73762 -13.59793 -13.48171 -13.24084 -12.94054 -12.87659 -12.82298 -12.52581 -12.41244 -12.35649 -12.32310 -12.20325 -12.13938 -12.09505 -11.70471 -11.38680 -11.32366 -11.25226 -11.17394 -10.79216 -10.64071 -10.33311 -10.24324 -10.16272 -9.29979 -8.24737 -6.41586 1.42344 1.44668 1.54896 1.72021 2.18040 2.38905 2.73827 3.01782 3.13813 3.74963 3.80914 3.86992 3.91830 4.03332 4.12730 4.18619 4.22920 4.28734 4.31941 4.34120 4.45409 4.50782 4.59871 4.61293 4.63538 4.65362 4.69137 4.77370 4.83741 4.87174 4.96793 5.02036 5.06035 5.10366 5.11284 5.15022 5.25966 5.31245 5.36389 5.38941 5.39755 5.46533 5.47327 5.50076 5.53524 5.66716 5.77019 6.04403 6.20413 6.41138 6.66191 7.08726 7.29745 7.39058 7.59553 8.80943 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002617 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.791632 B =10697.214260 C =11261.129231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.137 4.137 8 C 0.091 3.909 9 H 0.075 0.925 10 O -0.389 6.389 11 C 0.060 3.940 12 C 0.140 3.860 13 N -0.723 5.723 14 C 0.708 3.292 15 O -0.648 6.648 16 N -0.633 5.633 17 C 0.111 3.889 18 C -0.110 4.110 19 C 0.232 3.768 20 O -0.590 6.590 21 C -0.556 4.556 22 H 0.071 0.929 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.966 3.034 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.263 1.263 29 C 0.127 3.873 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.407 0.593 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.375 0.625 51 H 0.270 0.730 52 H 0.042 0.958 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 25.231 5.791 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.113 0.887 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.175 4.175 8 C 0.034 3.966 9 H 0.093 0.907 10 O -0.308 6.308 11 C -0.017 4.017 12 C 0.016 3.984 13 N -0.380 5.380 14 C 0.410 3.590 15 O -0.531 6.531 16 N -0.370 5.370 17 C -0.012 4.012 18 C -0.147 4.147 19 C 0.192 3.808 20 O -0.398 6.398 21 C -0.594 4.594 22 H 0.089 0.911 23 C -0.177 4.177 24 N -0.556 5.556 25 Si 0.791 3.209 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.187 1.187 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.244 0.756 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.225 0.775 51 H 0.079 0.921 52 H 0.060 0.940 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.912 25.251 5.891 26.223 hybrid contribution -0.422 -1.667 -0.105 1.722 sum 3.491 23.585 5.786 24.534 Atomic orbital electron populations 1.21752 0.95084 1.01422 1.01885 1.21249 0.95850 0.99216 0.93891 0.88687 1.21482 0.95839 1.00099 0.97446 1.21508 0.95239 1.00932 0.97777 1.21409 1.00012 0.99317 0.94583 1.22021 0.95308 1.01871 0.98277 1.22245 0.93518 0.82441 0.98445 0.90684 1.88007 1.86733 1.28765 1.27328 1.22758 1.01466 0.91638 0.85794 1.21296 0.90306 0.88772 0.97980 1.44868 1.20568 1.05810 1.66787 1.15782 0.82584 0.81981 0.78646 1.90833 1.27147 1.74370 1.60732 1.47823 1.16161 1.10316 1.62664 1.22057 0.82521 0.97505 0.99074 1.22590 0.96863 0.94430 1.00866 1.19904 0.88608 0.92429 0.79899 1.86063 1.54365 1.60280 1.39140 1.21818 0.95507 0.91353 1.50701 0.91066 1.25873 0.94773 1.03845 0.93173 1.69772 1.03811 1.34646 1.47380 0.85421 0.78722 0.79031 0.77734 1.20361 1.21001 1.18705 1.22684 1.00830 0.77740 0.98402 0.91937 0.92525 0.93894 0.92151 0.93830 0.90951 0.92886 0.91657 0.93270 0.89739 0.91411 0.89459 0.91073 0.93234 0.90250 0.75649 0.91582 0.89277 0.89803 0.89037 0.77512 0.92110 0.93994 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.05 71.98 0.65 -1.51 16 2 C -0.08 -1.18 2.55 -10.79 -0.03 -1.20 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.96 5.06 30.59 0.15 -1.80 16 5 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 6 C -0.12 -1.83 5.78 30.59 0.18 -1.65 16 7 C -0.14 -1.68 5.63 30.59 0.17 -1.51 16 8 C 0.09 1.25 2.35 30.59 0.07 1.32 16 9 H 0.08 0.78 7.79 -2.38 -0.02 0.76 16 10 O -0.39 -7.40 7.91 -148.98 -1.18 -8.58 16 11 C 0.06 0.97 5.88 71.98 0.42 1.40 16 12 C 0.14 3.53 6.06 86.38 0.52 4.05 16 13 N -0.72 -22.13 5.46 -478.54 -2.61 -24.75 16 14 C 0.71 30.21 8.49 179.05 1.52 31.73 16 15 O -0.65 -33.59 16.60 -3.96 -0.07 -33.65 16 16 N -0.63 -27.16 3.32 -829.31 -2.76 -29.91 16 17 C 0.11 3.74 6.15 86.73 0.53 4.27 16 18 C -0.11 -4.22 6.12 31.78 0.19 -4.02 16 19 C 0.23 11.50 0.89 -10.07 -0.01 11.49 16 20 O -0.59 -31.51 13.20 -148.98 -1.97 -33.48 16 21 C -0.56 -29.22 8.26 25.60 0.21 -29.00 16 22 H 0.07 3.59 7.79 -2.91 -0.02 3.57 16 23 C 0.02 1.28 5.26 84.66 0.45 1.73 16 24 N -0.92 -51.21 10.71 21.45 0.23 -50.98 16 25 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 29 C 0.13 6.50 5.52 86.93 0.48 6.98 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.84 7.68 -2.39 -0.02 0.83 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.03 7.68 -2.39 -0.02 1.01 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 41 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 42 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.41 10.47 7.46 -92.70 -0.69 9.77 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 49 H 0.09 3.22 8.04 -2.39 -0.02 3.20 16 50 H 0.38 21.20 7.18 -74.06 -0.53 20.67 16 51 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 52 H 0.04 2.20 8.03 -2.38 -0.02 2.18 16 53 H 0.04 2.23 7.50 -2.39 -0.02 2.21 16 Total: -1.00 -69.50 411.85 -0.96 -70.46 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -0.34 Total: 46.02 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.70 Total: 20.60 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.14 Total: -105.64 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: -3.21 Total: -75.71 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -69.50 -0.96 -70.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591912842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.743 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds