Wall clock time and date at job start Tue Mar 31 2020 22:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 O 1.42902 * 109.46578 * 119.99768 * 2 1 3 5 5 C 1.42898 * 114.00122 * 90.00169 * 4 2 1 6 6 H 1.08994 * 112.85149 * 21.69325 * 5 4 2 7 7 C 1.53778 * 113.61211 * 250.49236 * 5 4 2 8 8 C 1.53791 * 87.08093 * 219.93468 * 7 5 4 9 9 H 1.09004 * 113.61131 * 140.06771 * 8 7 5 10 10 N 1.46496 * 113.61347 * 270.88428 * 8 7 5 11 11 C 1.34773 * 119.99973 * 255.49155 * 10 8 7 12 12 O 1.21588 * 120.00151 * 359.73121 * 11 10 8 13 13 N 1.34784 * 119.99935 * 180.02562 * 11 10 8 14 14 C 1.47422 * 125.64551 * 359.41787 * 13 11 10 15 15 C 1.55130 * 104.72242 * 155.81770 * 14 13 11 16 16 C 1.55156 * 101.48388 * 37.29240 * 15 14 13 17 17 O 1.42904 * 110.87026 * 82.76944 * 16 15 14 18 18 C 1.50705 * 110.72211 * 205.96849 * 16 15 14 19 19 H 1.07999 * 119.99960 * 354.98243 * 18 16 15 20 20 C 1.37872 * 119.99892 * 174.98005 * 18 16 15 21 21 N 1.31516 * 120.00444 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 119.99952 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46630 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47082 * 119.99938 * 22 20 18 25 25 H 1.48498 * 109.46693 * 239.99819 * 22 20 18 26 26 C 1.47016 * 125.65076 * 179.72825 * 13 11 10 27 27 C 1.53776 * 87.07706 * 25.43544 * 8 7 5 28 28 C 1.52998 * 113.61818 * 89.11891 * 27 8 7 29 29 C 1.53001 * 113.61152 * 220.01824 * 27 8 7 30 30 H 1.08991 * 109.47387 * 300.00603 * 1 2 3 31 31 H 1.09003 * 109.46516 * 60.00701 * 1 2 3 32 32 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47294 * 239.99252 * 2 1 3 34 34 H 1.09000 * 109.47383 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47184 * 299.99495 * 3 2 1 36 36 H 1.09000 * 109.47602 * 59.99441 * 3 2 1 37 37 H 1.08997 * 113.61502 * 105.39171 * 7 5 4 38 38 H 1.08996 * 113.69500 * 334.49338 * 7 5 4 39 39 H 0.97004 * 120.00009 * 75.50004 * 10 8 7 40 40 H 1.09000 * 110.36690 * 274.74737 * 14 13 11 41 41 H 1.09001 * 110.36834 * 37.06914 * 14 13 11 42 42 H 1.09006 * 111.19247 * 279.19462 * 15 14 13 43 43 H 1.08997 * 110.90922 * 155.27266 * 15 14 13 44 44 H 0.96701 * 113.99974 * 184.93581 * 17 16 15 45 45 H 0.96996 * 120.00439 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.88086 * 300.43989 * 26 13 11 47 47 H 1.09003 * 109.88164 * 61.44850 * 26 13 11 48 48 H 1.08999 * 109.47204 * 59.99418 * 28 27 8 49 49 H 1.09001 * 109.47350 * 179.97438 * 28 27 8 50 50 H 1.09001 * 109.47150 * 299.99573 * 28 27 8 51 51 H 1.08997 * 109.47589 * 60.00225 * 29 27 8 52 52 H 1.09001 * 109.47456 * 180.02562 * 29 27 8 53 53 H 1.09001 * 109.47514 * 299.99994 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1999 -2.0782 0.9888 6 1 2.3233 -2.3592 -0.0570 7 6 1.1744 -2.9418 1.7420 8 6 2.3376 -3.8900 2.0785 9 1 2.3009 -4.2824 3.0948 10 7 2.5537 -4.9334 1.0732 11 6 2.1617 -6.1989 1.3205 12 8 1.6330 -6.4756 2.3798 13 7 2.3610 -7.1590 0.3957 14 6 2.9818 -6.9623 -0.9269 15 6 3.5362 -8.3586 -1.3137 16 6 2.4326 -9.2949 -0.7544 17 8 1.3429 -9.4027 -1.6727 18 6 2.9976 -10.6558 -0.4385 19 1 4.0233 -10.8855 -0.6864 20 6 2.2050 -11.6076 0.1671 21 7 0.9561 -11.3278 0.4696 22 14 2.9056 -13.2943 0.5594 23 1 4.3235 -13.3551 0.1224 24 1 2.8273 -13.5347 2.0227 25 1 2.1226 -14.3340 -0.1556 26 6 1.9895 -8.5745 0.5363 27 6 3.2691 -2.6771 1.9178 28 6 3.4717 -1.8842 3.2105 29 6 4.5843 -3.0044 1.2076 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 0.4203 -3.3887 1.0943 38 1 0.7451 -2.4504 2.6151 39 1 2.9791 -4.7135 0.2296 40 1 2.2362 -6.6337 -1.6508 41 1 3.7932 -6.2374 -0.8611 42 1 4.4936 -8.5505 -0.8294 43 1 3.6208 -8.4574 -2.3959 44 1 0.5951 -9.9159 -1.3372 45 1 0.3986 -11.9973 0.8960 46 1 2.4998 -9.0079 1.3965 47 1 0.9104 -8.6638 0.6618 48 1 3.9097 -2.5324 3.9695 49 1 4.1402 -1.0444 3.0207 50 1 2.5099 -1.5111 3.5624 51 1 4.3727 -3.3865 0.2090 52 1 5.1901 -2.1015 1.1306 53 1 5.1272 -3.7582 1.7777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592011614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:56 Heat of formation + Delta-G solvation = -128.525961 kcal Electronic energy + Delta-G solvation = -31506.112668 eV Core-core repulsion = 27377.577106 eV Total energy + Delta-G solvation = -4128.535563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.94827 -40.71175 -39.06574 -38.09859 -36.07697 -34.46958 -34.22879 -33.04396 -31.77852 -31.16464 -29.54544 -28.33466 -28.04799 -27.11478 -25.34902 -24.19497 -23.45467 -22.20103 -21.47884 -21.04507 -19.98893 -19.11458 -18.71194 -17.86775 -17.33722 -16.81110 -16.69154 -16.39244 -16.18747 -16.07511 -15.73384 -15.01394 -14.87475 -14.78173 -14.72989 -14.62850 -14.18547 -14.05734 -13.79326 -13.51732 -13.38185 -13.24607 -13.10610 -13.06720 -13.03227 -12.95590 -12.87271 -12.68299 -12.52841 -12.34706 -12.28058 -12.25104 -12.08841 -12.01562 -11.64274 -11.50609 -11.33114 -11.17851 -11.14312 -10.66151 -10.29615 -10.27981 -10.16339 -9.41539 -8.26309 -6.41942 1.39454 1.43039 1.53561 1.59797 2.10207 2.37612 2.73019 2.99577 3.00646 3.30457 3.50849 3.79004 3.81778 3.88056 4.04561 4.04770 4.16663 4.19326 4.25497 4.30409 4.37134 4.37428 4.54025 4.57701 4.67747 4.72056 4.75362 4.79537 4.84738 4.89888 4.93354 4.94111 4.99822 5.02962 5.05693 5.09859 5.12627 5.13160 5.23779 5.31550 5.35750 5.36683 5.38857 5.43441 5.50635 5.60743 5.74911 6.02867 6.15891 6.41782 6.65280 7.03623 7.27384 7.34971 7.54987 8.79903 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002437 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.848543 B =11484.795096 C =11762.233629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.146 4.146 4 O -0.371 6.371 5 C 0.086 3.914 6 H 0.096 0.904 7 C -0.168 4.168 8 C 0.139 3.861 9 H 0.080 0.920 10 N -0.708 5.708 11 C 0.713 3.287 12 O -0.643 6.643 13 N -0.635 5.635 14 C 0.107 3.893 15 C -0.109 4.109 16 C 0.233 3.767 17 O -0.586 6.586 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.962 3.038 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.278 1.278 26 C 0.142 3.858 27 C -0.074 4.074 28 C -0.114 4.114 29 C -0.136 4.136 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.408 0.592 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.028 0.972 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.063 0.937 52 H 0.075 0.925 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 24.419 -3.074 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.203 4.203 4 O -0.290 6.290 5 C 0.028 3.972 6 H 0.114 0.886 7 C -0.208 4.208 8 C 0.032 3.968 9 H 0.098 0.902 10 N -0.364 5.364 11 C 0.415 3.585 12 O -0.525 6.525 13 N -0.371 5.371 14 C -0.015 4.015 15 C -0.147 4.147 16 C 0.192 3.808 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.788 3.212 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.203 1.203 26 C 0.018 3.982 27 C -0.075 4.075 28 C -0.171 4.171 29 C -0.194 4.194 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.246 0.754 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.224 0.776 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.094 0.906 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.477 24.667 -2.399 25.382 hybrid contribution -0.726 -1.863 0.451 2.050 sum 4.751 22.804 -1.948 23.375 Atomic orbital electron populations 1.22313 0.96062 1.01897 1.02831 1.22351 0.93770 0.94517 0.87905 1.21850 1.01737 0.93751 1.02938 1.87956 1.85613 1.19251 1.36159 1.23835 0.94520 0.80691 0.98198 0.88619 1.23971 0.97515 0.97398 1.01893 1.21653 0.97131 0.85963 0.92013 0.90153 1.44580 1.65364 1.05255 1.21234 1.15699 0.79156 0.81039 0.82601 1.90852 1.52097 1.82350 1.27202 1.47890 1.63406 1.08635 1.17199 1.22461 0.97319 0.98638 0.83077 1.22755 0.97439 0.92515 1.02020 1.19720 0.84634 0.92463 0.83943 1.86088 1.30437 1.76874 1.46022 1.21864 0.98875 0.98137 1.40399 0.91385 1.25827 0.95195 1.02589 0.94069 1.69816 1.07513 1.36102 1.42090 0.85435 0.78983 0.79332 0.77464 1.18737 1.21139 1.20335 1.22341 0.97377 0.77915 1.00535 1.22475 0.94701 0.92745 0.97623 1.21371 1.02443 0.99243 0.94049 1.21716 0.95375 1.02349 0.99911 0.92418 0.90431 0.93527 0.91477 0.91956 0.89872 0.92378 0.92198 0.88512 0.75441 0.91036 0.88046 0.89732 0.89035 0.77619 0.92172 0.95316 0.95554 0.92467 0.90718 0.92319 0.91833 0.90567 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.53 71.98 0.69 -1.76 16 2 C 0.07 1.01 3.34 30.59 0.10 1.11 16 3 C -0.15 -1.60 9.56 71.98 0.69 -0.91 16 4 O -0.37 -6.64 9.10 -148.98 -1.36 -8.00 16 5 C 0.09 1.54 3.55 31.12 0.11 1.65 16 6 H 0.10 1.50 7.30 -2.39 -0.02 1.48 16 7 C -0.17 -3.87 7.36 31.12 0.23 -3.64 16 8 C 0.14 3.56 3.74 45.52 0.17 3.73 16 9 H 0.08 2.52 7.49 -2.39 -0.02 2.50 16 10 N -0.71 -20.02 4.78 -455.29 -2.18 -22.19 16 11 C 0.71 28.83 8.49 179.05 1.52 30.35 16 12 O -0.64 -32.33 16.31 -3.99 -0.07 -32.40 16 13 N -0.63 -25.94 3.32 -829.33 -2.76 -28.70 16 14 C 0.11 3.36 6.59 86.93 0.57 3.93 16 15 C -0.11 -4.04 6.24 32.06 0.20 -3.84 16 16 C 0.23 11.20 0.85 -10.35 -0.01 11.19 16 17 O -0.59 -29.42 13.08 -148.98 -1.95 -31.37 16 18 C -0.55 -29.03 8.12 25.60 0.21 -28.82 16 19 H 0.07 3.46 7.78 -2.91 -0.02 3.43 16 20 C 0.02 1.27 5.28 84.65 0.45 1.72 16 21 N -0.92 -50.45 10.97 21.45 0.24 -50.21 16 22 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.14 7.17 5.23 86.73 0.45 7.63 16 27 C -0.07 -1.37 1.34 -51.66 -0.07 -1.44 16 28 C -0.11 -1.98 8.46 71.98 0.61 -1.37 16 29 C -0.14 -2.10 8.58 71.98 0.62 -1.48 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.83 7.43 -2.39 -0.02 0.81 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 2.20 7.66 -2.39 -0.02 2.18 16 39 H 0.41 8.91 5.54 -92.71 -0.51 8.40 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.10 2.27 7.28 -2.39 -0.02 2.25 16 42 H 0.08 2.99 8.04 -2.38 -0.02 2.97 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.37 19.79 7.45 -74.06 -0.55 19.24 16 45 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.03 1.61 7.81 -2.39 -0.02 1.59 16 47 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 1.09 7.19 -2.39 -0.02 1.07 16 51 H 0.06 0.84 6.58 -2.39 -0.02 0.83 16 52 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -67.63 414.28 0.33 -67.31 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.17 Total: 43.14 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.54 Total: 18.04 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.70 Total: -101.10 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -3.37 Total: -71.77 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -67.63 0.33 -67.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592011614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.219 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds