Wall clock time and date at job start Tue Mar 31 2020 22:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47661 * 2 1 4 4 O 1.42901 * 109.47205 * 120.00576 * 2 1 3 5 5 C 1.42902 * 114.00470 * 89.99594 * 4 2 1 6 6 H 1.09002 * 112.90728 * 18.74847 * 5 4 2 7 7 C 1.53778 * 113.61376 * 247.50128 * 5 4 2 8 8 C 1.53782 * 87.07782 * 270.88215 * 7 5 4 9 9 H 1.09013 * 113.68889 * 220.00963 * 8 7 5 10 10 N 1.46497 * 113.61789 * 89.11862 * 8 7 5 11 11 C 1.34781 * 119.99966 * 107.49586 * 10 8 7 12 12 O 1.21584 * 120.00062 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99807 * 180.02562 * 11 10 8 14 14 C 1.47429 * 125.64839 * 359.97438 * 13 11 10 15 15 C 1.54909 * 104.83087 * 155.90473 * 14 13 11 16 16 C 1.55161 * 101.58217 * 37.01238 * 15 14 13 17 17 O 1.42902 * 110.72095 * 83.03709 * 16 15 14 18 18 C 1.50701 * 110.72134 * 206.13543 * 16 15 14 19 19 H 1.07999 * 120.00039 * 117.20642 * 18 16 15 20 20 C 1.37876 * 119.99596 * 297.20824 * 18 16 15 21 21 N 1.31518 * 119.99642 * 186.11382 * 20 18 16 22 22 Si 1.86799 * 120.00288 * 6.11945 * 20 18 16 23 23 H 1.48496 * 109.47084 * 84.88215 * 22 20 18 24 24 H 1.48499 * 109.46937 * 204.88154 * 22 20 18 25 25 H 1.48500 * 109.46923 * 324.88088 * 22 20 18 26 26 C 1.47313 * 125.61446 * 180.20099 * 13 11 10 27 27 C 1.53777 * 87.08244 * 334.56554 * 8 7 5 28 28 C 1.53004 * 113.61392 * 139.98200 * 27 8 7 29 29 C 1.52999 * 113.61909 * 270.80237 * 27 8 7 30 30 H 1.09006 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47359 * 299.99694 * 1 2 3 32 32 H 1.08998 * 109.47304 * 59.99786 * 1 2 3 33 33 H 1.09004 * 109.46889 * 239.99709 * 2 1 3 34 34 H 1.08997 * 109.47567 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46936 * 300.00439 * 3 2 1 36 36 H 1.08999 * 109.46799 * 59.99749 * 3 2 1 37 37 H 1.09001 * 113.61195 * 156.33341 * 7 5 4 38 38 H 1.09000 * 113.61787 * 25.43109 * 7 5 4 39 39 H 0.97001 * 120.00011 * 287.50507 * 10 8 7 40 40 H 1.09005 * 110.36516 * 37.07156 * 14 13 11 41 41 H 1.08994 * 110.46374 * 274.79406 * 14 13 11 42 42 H 1.08999 * 111.00233 * 278.94042 * 15 14 13 43 43 H 1.09000 * 111.03993 * 155.10019 * 15 14 13 44 44 H 0.96700 * 113.99815 * 182.44505 * 17 16 15 45 45 H 0.97002 * 120.00006 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.06723 * 61.68653 * 26 13 11 47 47 H 1.08997 * 109.85257 * 300.42129 * 26 13 11 48 48 H 1.08998 * 109.46993 * 59.99826 * 28 27 8 49 49 H 1.08998 * 109.47369 * 180.02562 * 28 27 8 50 50 H 1.09007 * 109.46952 * 300.00609 * 28 27 8 51 51 H 1.09000 * 109.47169 * 59.99751 * 29 27 8 52 52 H 1.08996 * 109.46906 * 180.02562 * 29 27 8 53 53 H 1.09000 * 109.47211 * 299.99824 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0783 0.9885 6 1 2.2722 -2.3670 -0.0601 7 6 1.2203 -2.9430 1.7994 8 6 2.2463 -2.8927 2.9439 9 1 2.3568 -3.8383 3.4749 10 7 2.0648 -1.7521 3.8451 11 6 1.5763 -1.9450 5.0863 12 8 1.2866 -3.0657 5.4582 13 7 1.4088 -0.8955 5.9152 14 6 1.7181 0.5100 5.5952 15 6 0.8183 1.3400 6.5446 16 6 0.8505 0.4798 7.8355 17 8 2.0216 0.7640 8.6035 18 6 -0.3919 0.7057 8.6579 19 1 -1.0743 -0.1112 8.8409 20 6 -0.6574 1.9553 9.1766 21 7 -1.6749 2.1260 9.9923 22 14 0.4278 3.4057 8.7207 23 1 -0.0415 3.9916 7.4395 24 1 0.3560 4.4331 9.7906 25 1 1.8316 2.9454 8.5699 26 6 0.8908 -0.9643 7.2925 27 6 3.3193 -2.6621 1.8667 28 6 4.3809 -1.6363 2.2688 29 6 3.9219 -3.9557 1.3150 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.0749 -3.9414 1.3870 38 1 0.2822 -2.4390 2.0316 39 1 2.2961 -0.8580 3.5484 40 1 1.4724 0.7252 4.5553 41 1 2.7698 0.7221 5.7875 42 1 -0.1957 1.4184 6.1525 43 1 1.2436 2.3277 6.7226 44 1 2.1085 0.2256 9.4020 45 1 -1.8615 3.0050 10.3575 46 1 1.5502 -1.5741 7.9101 47 1 -0.1137 -1.3874 7.2895 48 1 4.8920 -1.9764 3.1694 49 1 5.1036 -1.5254 1.4604 50 1 3.9031 -0.6760 2.4629 51 1 3.1345 -4.5606 0.8655 52 1 4.6709 -3.7148 0.5607 53 1 4.3901 -4.5133 2.1262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592011620.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:08 Heat of formation + Delta-G solvation = -116.628172 kcal Electronic energy + Delta-G solvation = -32266.678127 eV Core-core repulsion = 28138.658492 eV Total energy + Delta-G solvation = -4128.019636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.95474 -40.80776 -39.18887 -38.00702 -36.16125 -34.51164 -34.39272 -33.12985 -31.87331 -31.22980 -29.98924 -28.16425 -28.05432 -27.20954 -25.33868 -24.10377 -23.44602 -22.21081 -21.65645 -21.00932 -20.09715 -19.43680 -18.83449 -17.40119 -17.30549 -16.91526 -16.73398 -16.55023 -16.28491 -16.05627 -15.88067 -15.12509 -15.04104 -14.93970 -14.79385 -14.41868 -14.28162 -14.09285 -14.03408 -13.92285 -13.31188 -13.25377 -13.19259 -13.12890 -13.05126 -12.97457 -12.87908 -12.84990 -12.68647 -12.40634 -12.21914 -12.16559 -11.98896 -11.81893 -11.55216 -11.47618 -11.28465 -10.99084 -10.94507 -10.78568 -10.36384 -10.31441 -10.10924 -9.45903 -8.36852 -6.52520 1.38546 1.46663 1.57395 1.68042 2.09344 2.40055 2.55634 2.98672 3.00895 3.45398 3.53270 3.58775 3.76224 3.87322 4.01234 4.04231 4.07353 4.19907 4.21037 4.27885 4.33054 4.40984 4.41451 4.51572 4.60769 4.69143 4.75258 4.77462 4.79461 4.84409 4.91152 4.93156 4.94830 4.99920 5.03903 5.04747 5.05228 5.07675 5.13441 5.18483 5.33023 5.37276 5.40853 5.46026 5.47487 5.49587 5.69588 6.05866 6.11470 6.44996 6.58020 7.00207 7.11253 7.28615 7.54754 8.77560 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003338 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.624347 B = 8385.957258 C = 9356.580638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 C -0.149 4.149 4 O -0.373 6.373 5 C 0.083 3.917 6 H 0.099 0.901 7 C -0.174 4.174 8 C 0.136 3.864 9 H 0.078 0.922 10 N -0.704 5.704 11 C 0.715 3.285 12 O -0.640 6.640 13 N -0.632 5.632 14 C 0.113 3.887 15 C -0.126 4.126 16 C 0.220 3.780 17 O -0.571 6.571 18 C -0.555 4.555 19 H 0.034 0.966 20 C 0.038 3.962 21 N -0.936 5.936 22 Si 0.939 3.061 23 H -0.267 1.267 24 H -0.307 1.307 25 H -0.212 1.212 26 C 0.125 3.875 27 C -0.083 4.083 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.409 0.591 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.377 0.623 45 H 0.269 0.731 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.290 -4.448 -26.616 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.292 6.292 5 C 0.025 3.975 6 H 0.117 0.883 7 C -0.213 4.213 8 C 0.030 3.970 9 H 0.096 0.904 10 N -0.359 5.359 11 C 0.417 3.583 12 O -0.523 6.523 13 N -0.369 5.369 14 C -0.009 4.009 15 C -0.164 4.164 16 C 0.179 3.821 17 O -0.378 6.378 18 C -0.592 4.592 19 H 0.053 0.947 20 C -0.163 4.163 21 N -0.574 5.574 22 Si 0.764 3.236 23 H -0.193 1.193 24 H -0.235 1.235 25 H -0.134 1.134 26 C 0.000 4.000 27 C -0.084 4.084 28 C -0.187 4.187 29 C -0.180 4.180 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.226 0.774 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.090 0.910 52 H 0.100 0.900 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.141 -4.676 -26.614 30.048 hybrid contribution -0.762 0.406 0.967 1.296 sum 12.380 -4.270 -25.647 28.797 Atomic orbital electron populations 1.22332 0.96422 1.02044 1.02419 1.22314 0.93309 0.94149 0.87771 1.21881 1.01889 0.94090 1.02803 1.87823 1.85523 1.19078 1.36809 1.23216 0.94350 0.81147 0.98765 0.88325 1.24020 0.98073 1.01804 0.97415 1.21897 0.97234 0.88668 0.89182 0.90395 1.44641 1.68450 1.11672 1.11166 1.15643 0.78557 0.82955 0.81121 1.90836 1.60371 1.23690 1.77372 1.47669 1.67624 1.06942 1.14630 1.22317 0.99660 0.79356 0.99532 1.23010 1.00133 0.98681 0.94545 1.19759 0.83812 0.89346 0.89144 1.86419 1.45101 1.65761 1.40557 1.21417 1.07283 0.96585 1.33954 0.94746 1.25789 0.95704 1.01983 0.92817 1.70075 1.31045 1.24684 1.31616 0.86078 0.83071 0.77197 0.77249 1.19295 1.23480 1.13433 1.22363 0.97232 0.99067 0.81289 1.22529 0.94017 0.97648 0.94201 1.21511 0.97659 0.98291 1.01211 1.21569 1.01332 0.93712 1.01390 0.92946 0.93582 0.90335 0.90420 0.91682 0.89843 0.92943 0.86684 0.92537 0.75277 0.89103 0.90155 0.90361 0.89989 0.77447 0.92228 0.92545 0.93871 0.93606 0.90885 0.92376 0.90957 0.90047 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.53 71.98 0.69 -1.88 16 2 C 0.08 1.09 3.33 30.59 0.10 1.19 16 3 C -0.15 -1.80 9.56 71.98 0.69 -1.11 16 4 O -0.37 -6.47 7.21 -148.98 -1.07 -7.54 16 5 C 0.08 1.26 3.75 31.12 0.12 1.38 16 6 H 0.10 1.03 7.42 -2.39 -0.02 1.01 16 7 C -0.17 -3.42 7.36 31.12 0.23 -3.19 16 8 C 0.14 3.28 3.78 45.52 0.17 3.45 16 9 H 0.08 2.22 7.42 -2.38 -0.02 2.20 16 10 N -0.70 -20.28 4.62 -455.29 -2.10 -22.39 16 11 C 0.72 27.45 8.49 179.05 1.52 28.97 16 12 O -0.64 -29.54 16.27 -3.98 -0.06 -29.60 16 13 N -0.63 -24.26 3.33 -828.99 -2.76 -27.02 16 14 C 0.11 3.69 6.57 86.85 0.57 4.26 16 15 C -0.13 -4.96 4.81 31.99 0.15 -4.80 16 16 C 0.22 9.91 0.68 -10.35 -0.01 9.90 16 17 O -0.57 -24.08 10.47 -148.98 -1.56 -25.64 16 18 C -0.55 -30.78 8.80 25.60 0.23 -30.56 16 19 H 0.03 2.16 7.80 -2.91 -0.02 2.13 16 20 C 0.04 2.12 5.47 84.65 0.46 2.58 16 21 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 22 Si 0.94 43.11 23.95 68.60 1.64 44.76 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.21 -9.13 5.41 99.48 0.54 -8.59 16 26 C 0.12 5.47 6.24 86.68 0.54 6.01 16 27 C -0.08 -1.33 1.34 -51.66 -0.07 -1.40 16 28 C -0.13 -2.14 8.43 71.98 0.61 -1.53 16 29 C -0.12 -1.38 9.07 71.98 0.65 -0.73 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.76 7.42 -2.38 -0.02 0.74 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 1.76 7.66 -2.39 -0.02 1.74 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.41 10.54 4.58 -92.71 -0.42 10.11 16 40 H 0.09 2.44 7.30 -2.38 -0.02 2.42 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 3.21 8.04 -2.39 -0.02 3.19 16 43 H 0.08 3.13 4.95 -2.39 -0.01 3.11 16 44 H 0.38 14.19 9.09 -74.06 -0.67 13.52 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.06 2.44 8.07 -2.39 -0.02 2.42 16 47 H 0.04 2.11 7.65 -2.39 -0.02 2.09 16 48 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 1.07 5.68 -2.38 -0.01 1.06 16 51 H 0.07 0.67 7.35 -2.39 -0.02 0.65 16 52 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -72.99 403.06 0.67 -72.32 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -0.36 Total: 39.57 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.65 Total: 12.53 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.57 Total: -106.39 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -2.70 Total: -62.79 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.64 Total: 44.76 kcal Total: -72.99 0.67 -72.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592011620.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.306 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds