Wall clock time and date at job start Tue Mar 31 2020 23:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53082 * 1 3 3 H 1.10929 * 106.79352 * 2 1 4 4 C 1.52571 * 109.98594 * 244.06305 * 2 1 3 5 5 C 1.52972 * 110.16150 * 281.79254 * 4 2 1 6 6 H 1.08761 * 110.26115 * 61.91701 * 5 4 2 7 7 C 1.53247 * 109.32189 * 181.89053 * 5 4 2 8 8 C 1.53000 * 109.46700 * 184.99858 * 7 5 4 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 5 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00297 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99768 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.65064 * 0.02562 * 12 10 9 14 14 C 1.54321 * 107.27121 * 181.02105 * 13 12 10 15 15 C 1.55157 * 102.94399 * 22.19422 * 14 13 12 16 16 O 1.42899 * 111.00453 * 82.60579 * 15 14 13 17 17 C 1.50690 * 111.00629 * 206.42173 * 15 14 13 18 18 H 1.08004 * 120.00005 * 0.02562 * 17 15 14 19 19 C 1.37877 * 120.00136 * 179.97438 * 17 15 14 20 20 N 1.31520 * 120.00110 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00286 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47296 * 59.99925 * 21 19 17 23 23 H 1.48498 * 109.47269 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46855 * 299.99973 * 21 19 17 25 25 C 1.47422 * 125.64322 * 179.71473 * 12 10 9 26 26 C 1.52974 * 108.51337 * 301.05422 * 5 4 2 27 27 C 1.52570 * 110.12191 * 59.06400 * 26 5 4 28 28 H 1.10917 * 107.15990 * 193.69667 * 27 26 5 29 29 C 1.53074 * 109.98889 * 77.95440 * 27 26 5 30 30 O 1.40752 * 111.56397 * 117.65377 * 2 1 3 31 31 H 1.09006 * 109.47041 * 175.93350 * 1 2 3 32 32 H 1.08995 * 109.47175 * 295.93349 * 1 2 3 33 33 H 1.09002 * 109.46803 * 55.93939 * 1 2 3 34 34 H 1.09226 * 109.57637 * 161.43875 * 4 2 1 35 35 H 1.09244 * 109.55828 * 42.12046 * 4 2 1 36 36 H 1.09001 * 109.46816 * 65.00216 * 7 5 4 37 37 H 1.08992 * 109.47535 * 305.00192 * 7 5 4 38 38 H 1.09002 * 109.47398 * 300.00409 * 8 7 5 39 39 H 1.09001 * 109.47194 * 60.00589 * 8 7 5 40 40 H 0.97000 * 120.00420 * 0.02562 * 9 8 7 41 41 H 1.08998 * 109.88426 * 300.44205 * 13 12 10 42 42 H 1.09004 * 109.88206 * 61.60249 * 13 12 10 43 43 H 1.09001 * 110.72042 * 140.55653 * 14 13 12 44 44 H 1.09003 * 110.72105 * 263.83066 * 14 13 12 45 45 H 0.96698 * 114.00308 * 179.97438 * 16 15 14 46 46 H 0.96998 * 120.00247 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.37403 * 274.74705 * 25 12 10 48 48 H 1.08999 * 110.37045 * 37.07813 * 25 12 10 49 49 H 1.09232 * 109.35123 * 179.51640 * 26 5 4 50 50 H 1.09230 * 109.35562 * 298.61393 * 26 5 4 51 51 H 1.09000 * 109.47325 * 293.65239 * 29 27 26 52 52 H 1.08997 * 109.47008 * 53.65562 * 29 27 26 53 53 H 1.09005 * 109.47352 * 173.65513 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8513 1.0620 0.0000 4 6 2.0523 -0.6271 -1.2894 5 6 1.9567 -2.1518 -1.2104 6 1 0.9191 -2.4590 -1.1007 7 6 2.5283 -2.7629 -2.4942 8 6 2.3215 -4.2787 -2.4734 9 7 2.8684 -4.8631 -3.7004 10 6 2.7981 -6.1937 -3.9027 11 8 2.2803 -6.9092 -3.0670 12 7 3.3019 -6.7314 -5.0313 13 6 3.9523 -5.9864 -6.1192 14 6 4.3418 -7.0099 -7.2064 15 6 3.3836 -8.1974 -6.9251 16 8 2.1033 -7.9743 -7.5192 17 6 3.9787 -9.4967 -7.4032 18 1 4.9528 -9.5052 -7.8698 19 6 3.2803 -10.6747 -7.2441 20 7 2.0944 -10.6645 -6.6754 21 14 4.0183 -12.2855 -7.8361 22 1 5.3015 -12.5311 -7.1302 23 1 3.0753 -13.3965 -7.5507 24 1 4.2645 -12.2091 -9.2985 25 6 3.2976 -8.1646 -5.3765 26 6 2.7799 -2.6287 -0.0125 27 6 2.2531 -1.9956 1.2719 28 1 3.0174 -2.1649 2.0576 29 6 0.9824 -2.7171 1.7278 30 8 2.0481 -0.6075 1.1595 31 1 -0.3633 -1.0251 -0.0729 32 1 -0.3633 0.4494 0.9241 33 1 -0.3633 0.5756 -0.8514 34 1 3.0942 -0.3371 -1.4421 35 1 1.4597 -0.2707 -2.1351 36 1 3.5939 -2.5425 -2.5584 37 1 2.0168 -2.3382 -3.3579 38 1 2.8330 -4.7035 -1.6097 39 1 1.2559 -4.4992 -2.4093 40 1 3.2812 -4.2923 -4.3674 41 1 3.2598 -5.2527 -6.5318 42 1 4.8451 -5.4863 -5.7439 43 1 4.1671 -6.6009 -8.2015 44 1 5.3812 -7.3176 -7.0918 45 1 1.4705 -8.6903 -7.3705 46 1 1.6029 -11.4932 -6.5638 47 1 4.1605 -8.6636 -4.9356 48 1 2.3735 -8.6335 -5.0384 49 1 2.7141 -3.7165 0.0620 50 1 3.8255 -2.3475 -0.1568 51 1 0.1865 -2.5442 1.0034 52 1 1.1790 -3.7865 1.8032 53 1 0.6767 -2.3343 2.7016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592020017.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:56 Heat of formation + Delta-G solvation = -166.483217 kcal Electronic energy + Delta-G solvation = -30653.495821 eV Core-core repulsion = 26523.314308 eV Total energy + Delta-G solvation = -4130.181513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.29521 -40.83377 -39.14889 -37.12949 -36.06658 -34.97876 -34.32880 -34.14879 -32.07521 -31.27488 -29.71546 -29.14076 -27.25932 -26.93311 -25.01257 -23.97935 -23.64321 -22.31932 -21.44312 -20.90163 -19.44373 -19.28711 -18.81413 -17.55613 -17.21618 -17.04925 -16.83112 -16.70677 -16.24599 -16.03919 -15.83365 -15.50986 -15.32995 -14.92811 -14.80816 -14.61397 -14.57100 -13.86658 -13.77267 -13.66735 -13.48833 -13.33501 -13.22332 -13.13832 -13.10242 -12.86666 -12.80679 -12.52242 -12.36078 -12.32329 -12.23204 -12.09948 -12.09017 -11.79838 -11.65880 -11.37514 -11.21920 -11.16678 -10.76113 -10.63899 -10.34623 -10.30779 -10.17073 -9.31134 -8.25277 -6.42435 1.43906 1.44381 1.52822 1.69675 2.15432 2.38409 2.74575 3.00700 3.10182 3.65232 3.71211 3.80729 3.83658 3.89475 4.05516 4.10132 4.15155 4.19418 4.29381 4.33681 4.35417 4.46515 4.52159 4.59026 4.62545 4.63664 4.66651 4.70626 4.76371 4.92265 4.95103 4.99784 5.01203 5.02106 5.05216 5.07542 5.10316 5.23058 5.25953 5.28320 5.31552 5.39752 5.40077 5.45653 5.49054 5.53773 5.77078 6.03013 6.19403 6.64832 6.86359 7.07821 7.30248 7.39270 7.57925 8.80124 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.001956 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.660216 B =14309.290434 C =14728.474724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.095 3.905 3 H 0.100 0.900 4 C -0.139 4.139 5 C -0.081 4.081 6 H 0.071 0.929 7 C -0.110 4.110 8 C 0.138 3.862 9 N -0.729 5.729 10 C 0.707 3.293 11 O -0.648 6.648 12 N -0.633 5.633 13 C 0.108 3.892 14 C -0.111 4.111 15 C 0.232 3.768 16 O -0.590 6.590 17 C -0.556 4.556 18 H 0.072 0.928 19 C 0.023 3.977 20 N -0.919 5.919 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.268 1.268 25 C 0.125 3.875 26 C -0.149 4.149 27 C 0.100 3.900 28 H 0.093 0.907 29 C -0.180 4.180 30 O -0.396 6.396 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.409 0.591 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.377 0.623 46 H 0.270 0.730 47 H 0.042 0.958 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.054 0.946 52 H 0.066 0.934 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 22.961 10.386 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.038 3.962 3 H 0.117 0.883 4 C -0.177 4.177 5 C -0.100 4.100 6 H 0.089 0.911 7 C -0.148 4.148 8 C 0.014 3.986 9 N -0.386 5.386 10 C 0.409 3.591 11 O -0.531 6.531 12 N -0.370 5.370 13 C -0.014 4.014 14 C -0.149 4.149 15 C 0.191 3.809 16 O -0.399 6.399 17 C -0.594 4.594 18 H 0.090 0.910 19 C -0.177 4.177 20 N -0.559 5.559 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.193 1.193 25 C 0.001 3.999 26 C -0.187 4.187 27 C 0.043 3.957 28 H 0.111 0.889 29 C -0.237 4.237 30 O -0.316 6.316 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.246 0.754 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.227 0.773 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.698 23.055 11.059 25.627 hybrid contribution -0.359 -2.034 -0.376 2.099 sum 1.339 21.021 10.683 23.618 Atomic orbital electron populations 1.22495 0.96315 1.02148 1.02692 1.21954 0.93129 0.96687 0.84465 0.88272 1.22138 1.03066 0.94230 0.98268 1.20924 0.99756 0.95603 0.93681 0.91091 1.21802 1.03019 0.91218 0.98757 1.21297 0.97747 0.94199 0.85332 1.44957 1.65128 1.04363 1.24199 1.15811 0.79082 0.83069 0.81147 1.90842 1.53289 1.61974 1.46956 1.47847 1.61119 1.09453 1.18563 1.22119 0.97334 0.94841 0.87141 1.22609 0.99200 0.94432 0.98647 1.19894 0.81827 0.93106 0.86042 1.86042 1.25611 1.49527 1.78754 1.21821 1.04805 0.92227 1.40529 0.91007 1.25874 0.95169 1.02852 0.93832 1.69688 1.13450 1.29275 1.43483 0.85477 0.78203 0.78171 0.79004 1.19474 1.21231 1.19286 1.22742 0.99011 0.78830 0.99348 1.22259 1.00467 1.01207 0.94721 1.21831 0.96674 0.80197 0.97009 0.88882 1.22487 0.98690 1.00786 1.01747 1.86373 1.83874 1.21934 1.39369 0.93190 0.92478 0.90325 0.90484 0.89277 0.89741 0.89770 0.92665 0.93644 0.75411 0.90887 0.89029 0.89612 0.89182 0.77275 0.92033 0.93971 0.94579 0.91003 0.90622 0.92744 0.91472 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.32 72.01 0.67 -1.52 16 2 C 0.09 1.23 3.43 30.48 0.10 1.34 16 3 H 0.10 1.08 8.28 -1.34 -0.01 1.07 16 4 C -0.14 -1.53 4.77 30.44 0.15 -1.39 16 5 C -0.08 -1.11 2.11 -10.73 -0.02 -1.13 16 6 H 0.07 1.11 6.70 -2.51 -0.02 1.10 16 7 C -0.11 -1.58 4.78 30.68 0.15 -1.43 16 8 C 0.14 3.27 5.45 86.38 0.47 3.75 16 9 N -0.73 -20.55 5.52 -478.52 -2.64 -23.19 16 10 C 0.71 28.96 8.49 179.05 1.52 30.48 16 11 O -0.65 -32.82 16.60 -4.00 -0.07 -32.89 16 12 N -0.63 -26.08 3.32 -829.30 -2.76 -28.84 16 13 C 0.11 3.40 6.15 86.73 0.53 3.93 16 14 C -0.11 -4.10 6.12 31.78 0.19 -3.91 16 15 C 0.23 11.24 0.89 -10.07 -0.01 11.23 16 16 O -0.59 -30.85 13.19 -148.98 -1.97 -32.82 16 17 C -0.56 -28.79 8.25 25.60 0.21 -28.57 16 18 H 0.07 3.55 7.76 -2.91 -0.02 3.53 16 19 C 0.02 1.21 5.29 84.65 0.45 1.66 16 20 N -0.92 -50.70 10.72 21.45 0.23 -50.47 16 21 Si 0.97 41.75 29.54 68.60 2.03 43.77 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.12 6.22 5.64 86.94 0.49 6.72 16 26 C -0.15 -2.23 4.53 30.44 0.14 -2.10 16 27 C 0.10 1.58 3.43 30.48 0.10 1.68 16 28 H 0.09 1.37 8.28 -1.35 -0.01 1.36 16 29 C -0.18 -2.83 9.38 72.01 0.68 -2.15 16 30 O -0.40 -6.83 9.72 -143.62 -1.40 -8.23 16 31 H 0.05 0.70 5.65 -2.38 -0.01 0.68 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.78 8.16 -2.27 -0.02 0.77 16 35 H 0.09 0.77 8.05 -2.26 -0.02 0.76 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.43 6.63 -2.39 -0.02 1.41 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.41 8.75 7.46 -92.71 -0.69 8.06 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.09 3.07 8.01 -2.39 -0.02 3.05 16 45 H 0.38 20.94 6.93 -74.06 -0.51 20.43 16 46 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 48 H 0.04 2.09 7.64 -2.39 -0.02 2.07 16 49 H 0.07 1.22 6.48 -2.26 -0.01 1.20 16 50 H 0.08 1.07 8.16 -2.26 -0.02 1.05 16 51 H 0.05 0.89 5.75 -2.39 -0.01 0.87 16 52 H 0.07 1.04 8.04 -2.39 -0.02 1.02 16 53 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -68.95 405.58 -1.03 -69.98 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -0.28 Total: 44.11 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.82 Total: 18.57 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.17 Total: -102.50 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -3.43 Total: -73.94 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.95 -1.03 -69.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020017.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.504 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds