Wall clock time and date at job start Tue Mar 31 2020 23:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53082 * 1 3 3 H 1.10916 * 106.80557 * 2 1 4 4 C 1.52580 * 109.98797 * 244.03533 * 2 1 3 5 5 C 1.52977 * 110.11789 * 282.05426 * 4 2 1 6 6 H 1.08757 * 110.26380 * 61.79679 * 5 4 2 7 7 C 1.53241 * 109.32375 * 181.76925 * 5 4 2 8 8 C 1.53002 * 109.47056 * 293.65786 * 7 5 4 9 9 N 1.46505 * 109.47151 * 179.97438 * 8 7 5 10 10 C 1.34774 * 120.00274 * 180.02562 * 9 8 7 11 11 O 1.21582 * 119.99635 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00184 * 179.72768 * 10 9 8 13 13 C 1.47426 * 125.64406 * 0.29780 * 12 10 9 14 14 C 1.54913 * 104.83001 * 204.09153 * 13 12 10 15 15 C 1.55158 * 101.58124 * 322.99459 * 14 13 12 16 16 O 1.42902 * 110.71731 * 276.95835 * 15 14 13 17 17 C 1.50705 * 110.72165 * 153.86501 * 15 14 13 18 18 H 1.07997 * 119.99790 * 2.78859 * 17 15 14 19 19 C 1.37871 * 119.99755 * 182.79225 * 17 15 14 20 20 N 1.31512 * 120.00490 * 5.90399 * 19 17 15 21 21 Si 1.86800 * 119.99706 * 185.89635 * 19 17 15 22 22 H 1.48509 * 109.47090 * 84.90739 * 21 19 17 23 23 H 1.48509 * 109.47220 * 204.90252 * 21 19 17 24 24 H 1.48498 * 109.47364 * 324.90744 * 21 19 17 25 25 C 1.47014 * 125.64820 * 179.97438 * 12 10 9 26 26 C 1.52963 * 108.51229 * 300.93130 * 5 4 2 27 27 C 1.52565 * 110.16725 * 58.94286 * 26 5 4 28 28 H 1.10927 * 107.14804 * 193.93098 * 27 26 5 29 29 C 1.53081 * 109.98515 * 78.22018 * 27 26 5 30 30 O 1.40747 * 113.15114 * 312.70576 * 27 26 5 31 31 H 1.08996 * 109.47059 * 302.30439 * 1 2 3 32 32 H 1.08997 * 109.47219 * 62.30653 * 1 2 3 33 33 H 1.08998 * 109.47047 * 182.31229 * 1 2 3 34 34 H 1.09229 * 109.56883 * 161.73167 * 4 2 1 35 35 H 1.09229 * 109.56779 * 42.37748 * 4 2 1 36 36 H 1.08995 * 109.47254 * 173.66000 * 7 5 4 37 37 H 1.09007 * 109.46930 * 53.65661 * 7 5 4 38 38 H 1.09003 * 109.47345 * 60.00503 * 8 7 5 39 39 H 1.08993 * 109.47221 * 299.99533 * 8 7 5 40 40 H 0.97006 * 119.99997 * 359.97438 * 9 8 7 41 41 H 1.08996 * 110.36830 * 322.92829 * 13 12 10 42 42 H 1.08996 * 110.36749 * 85.14618 * 13 12 10 43 43 H 1.09010 * 111.00257 * 81.06388 * 14 13 12 44 44 H 1.08998 * 111.00873 * 204.91329 * 14 13 12 45 45 H 0.96696 * 113.99794 * 174.40891 * 16 15 14 46 46 H 0.96999 * 120.00281 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.88414 * 298.39265 * 25 12 10 48 48 H 1.09002 * 109.88633 * 59.56145 * 25 12 10 49 49 H 1.09254 * 109.33861 * 179.39208 * 26 5 4 50 50 H 1.09230 * 109.35837 * 298.45482 * 26 5 4 51 51 H 1.08991 * 109.47322 * 59.99823 * 29 27 26 52 52 H 1.08998 * 109.47082 * 180.02562 * 29 27 26 53 53 H 1.09006 * 109.46856 * 299.99847 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8515 1.0618 0.0000 4 6 2.0524 -0.6278 -1.2892 5 6 1.9503 -2.1521 -1.2109 6 1 0.9115 -2.4550 -1.1011 7 6 2.5190 -2.7650 -2.4951 8 6 1.6266 -2.3873 -3.6791 9 7 2.1706 -2.9727 -4.9070 10 6 1.5459 -2.7710 -6.0840 11 8 0.5311 -2.1028 -6.1269 12 7 2.0494 -3.3050 -7.2144 13 6 3.2667 -4.1317 -7.3061 14 6 3.7483 -3.9674 -8.7692 15 6 2.4009 -3.9160 -9.5368 16 8 1.9103 -5.2349 -9.7858 17 6 2.5512 -3.1526 -10.8275 18 1 3.5186 -2.7718 -11.1200 19 6 1.4538 -2.9404 -11.6346 20 7 0.2571 -3.3010 -11.2257 21 14 1.6669 -2.1404 -13.3092 22 1 2.0273 -3.1763 -14.3104 23 1 0.3958 -1.4855 -13.7103 24 1 2.7468 -1.1236 -13.2383 25 6 1.4721 -3.1652 -8.5592 26 6 2.7718 -2.6330 -0.0135 27 6 2.2507 -1.9967 1.2715 28 1 3.0174 -2.1668 2.0549 29 6 0.9800 -2.7148 1.7330 30 8 2.0485 -0.6084 1.1590 31 1 -0.3633 0.5492 0.8686 32 1 -0.3633 0.4776 -0.9099 33 1 -0.3633 -1.0268 0.0415 34 1 3.0959 -0.3420 -1.4392 35 1 1.4629 -0.2684 -2.1356 36 1 2.5516 -3.8500 -2.3964 37 1 3.5267 -2.3850 -2.6638 38 1 1.5940 -1.3022 -3.7779 39 1 0.6191 -2.7673 -3.5105 40 1 2.9810 -3.5049 -4.8729 41 1 4.0256 -3.7674 -6.6137 42 1 3.0330 -5.1755 -7.0968 43 1 4.3054 -3.0389 -8.8952 44 1 4.3443 -4.8244 -9.0830 45 1 1.0306 -5.2581 -10.1866 46 1 -0.5149 -3.1520 -11.7938 47 1 0.4745 -3.6038 -8.5818 48 1 1.4224 -2.1115 -8.8337 49 1 2.6994 -3.7206 0.0616 50 1 3.8190 -2.3587 -0.1592 51 1 1.2032 -3.7655 1.9180 52 1 0.6149 -2.2536 2.6506 53 1 0.2167 -2.6364 0.9587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592020018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:00 Heat of formation + Delta-G solvation = -166.040102 kcal Electronic energy + Delta-G solvation = -30628.480916 eV Core-core repulsion = 26498.318618 eV Total energy + Delta-G solvation = -4130.162298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.31892 -40.83757 -39.20287 -37.13579 -36.08004 -34.98379 -34.32662 -34.23365 -32.02529 -31.26318 -29.72353 -29.12480 -27.25697 -26.94568 -25.00853 -24.02447 -23.66150 -22.31827 -21.45519 -20.93138 -19.44171 -19.23458 -18.83236 -17.61694 -17.33107 -17.00270 -16.84336 -16.65051 -16.28514 -16.01019 -15.81363 -15.49401 -15.29944 -14.92597 -14.78381 -14.65310 -14.62041 -13.89862 -13.83301 -13.65178 -13.53340 -13.33343 -13.22858 -13.12496 -13.10073 -12.86899 -12.82433 -12.53167 -12.37318 -12.31487 -12.29076 -12.10897 -12.07271 -11.79549 -11.65441 -11.35697 -11.16567 -11.15611 -10.75914 -10.67191 -10.31255 -10.28579 -10.22099 -9.38999 -8.26009 -6.41657 1.41630 1.42989 1.52197 1.67749 2.13787 2.38003 2.74723 2.99983 3.07404 3.65562 3.71551 3.80210 3.83223 3.89677 4.05255 4.05784 4.13775 4.18560 4.29858 4.33855 4.39067 4.46902 4.52614 4.59421 4.59485 4.63743 4.66809 4.70844 4.72714 4.92691 4.95358 5.00068 5.01507 5.02404 5.06673 5.08068 5.13254 5.23044 5.25308 5.26805 5.29022 5.36953 5.40042 5.49226 5.50499 5.53239 5.74529 6.03950 6.18953 6.64960 6.86661 7.06699 7.26738 7.33183 7.56858 8.79747 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.452737 B =14178.880835 C =14669.224253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.080 4.080 6 H 0.072 0.928 7 C -0.110 4.110 8 C 0.138 3.862 9 N -0.729 5.729 10 C 0.707 3.293 11 O -0.647 6.647 12 N -0.637 5.637 13 C 0.108 3.892 14 C -0.110 4.110 15 C 0.233 3.767 16 O -0.585 6.585 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.268 1.268 25 C 0.142 3.858 26 C -0.139 4.139 27 C 0.094 3.906 28 H 0.099 0.901 29 C -0.179 4.179 30 O -0.396 6.396 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.410 0.590 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.374 0.626 46 H 0.269 0.731 47 H 0.026 0.974 48 H 0.028 0.972 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.056 0.944 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 0.197 24.760 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.043 3.957 3 H 0.110 0.890 4 C -0.187 4.187 5 C -0.099 4.099 6 H 0.090 0.910 7 C -0.148 4.148 8 C 0.014 3.986 9 N -0.386 5.386 10 C 0.409 3.591 11 O -0.529 6.529 12 N -0.373 5.373 13 C -0.014 4.014 14 C -0.148 4.148 15 C 0.192 3.808 16 O -0.393 6.393 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.192 1.192 25 C 0.018 3.982 26 C -0.177 4.177 27 C 0.037 3.963 28 H 0.117 0.883 29 C -0.236 4.236 30 O -0.316 6.316 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.247 0.753 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.222 0.778 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.046 0.954 49 H 0.108 0.892 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.075 0.925 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.313 0.644 25.168 26.217 hybrid contribution -1.114 0.354 -1.768 2.120 sum 6.199 0.998 23.400 24.228 Atomic orbital electron populations 1.22484 0.96492 1.02326 1.02383 1.21831 0.92926 0.96481 0.84476 0.88977 1.22264 1.02625 0.95961 0.97861 1.20921 1.00217 0.94666 0.94134 0.90992 1.21805 0.99170 1.02259 0.91579 1.21305 0.97375 0.97657 0.82266 1.44967 1.30799 1.57841 1.05016 1.15800 0.82675 0.79890 0.80721 1.90845 1.28424 1.47264 1.86417 1.47925 1.29134 1.53948 1.06331 1.22410 0.85772 0.94968 0.98264 1.22719 0.96168 1.02923 0.92984 1.19729 0.89736 0.80235 0.91078 1.86100 1.38596 1.30070 1.84525 1.21824 0.95566 1.36317 1.05825 0.91411 1.25830 0.94740 0.95184 1.01903 1.69864 0.98987 1.48313 1.38226 0.85490 0.77439 0.78634 0.79592 1.19650 1.21272 1.19235 1.22347 0.96770 0.99116 0.79929 1.22137 1.00152 1.01949 0.93459 1.21955 0.97047 0.79937 0.97329 0.88316 1.22492 0.98450 1.01282 1.01404 1.86372 1.83769 1.22523 1.38922 0.92125 0.91491 0.92668 0.90700 0.91023 0.89577 0.89823 0.92825 0.93405 0.75327 0.87899 0.91017 0.89888 0.88992 0.77771 0.92171 0.95558 0.95396 0.89182 0.90541 0.90281 0.92519 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.38 72.01 0.68 -2.12 16 2 C 0.10 1.57 3.43 30.48 0.10 1.67 16 3 H 0.09 1.37 8.28 -1.35 -0.01 1.35 16 4 C -0.15 -2.23 4.53 30.45 0.14 -2.09 16 5 C -0.08 -1.07 2.11 -10.73 -0.02 -1.09 16 6 H 0.07 1.08 6.70 -2.52 -0.02 1.06 16 7 C -0.11 -1.51 4.78 30.68 0.15 -1.36 16 8 C 0.14 3.17 5.45 86.38 0.47 3.64 16 9 N -0.73 -19.95 5.52 -478.53 -2.64 -22.59 16 10 C 0.71 28.59 8.49 179.05 1.52 30.11 16 11 O -0.65 -32.53 16.67 -3.97 -0.07 -32.60 16 12 N -0.64 -26.12 3.33 -829.76 -2.76 -28.88 16 13 C 0.11 3.39 6.57 86.86 0.57 3.96 16 14 C -0.11 -4.08 6.23 31.99 0.20 -3.88 16 15 C 0.23 11.23 0.85 -10.34 -0.01 11.22 16 16 O -0.59 -29.35 13.07 -148.98 -1.95 -31.30 16 17 C -0.56 -29.26 8.11 25.60 0.21 -29.06 16 18 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 19 C 0.02 1.29 5.28 84.65 0.45 1.74 16 20 N -0.91 -50.48 11.03 21.44 0.24 -50.24 16 21 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 C 0.14 7.21 5.23 86.73 0.45 7.67 16 26 C -0.14 -1.48 4.77 30.44 0.15 -1.33 16 27 C 0.09 1.20 3.43 30.48 0.10 1.31 16 28 H 0.10 1.06 8.28 -1.35 -0.01 1.04 16 29 C -0.18 -2.12 9.32 72.01 0.67 -1.45 16 30 O -0.40 -6.80 9.72 -143.58 -1.40 -8.19 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 33 H 0.05 0.88 5.75 -2.39 -0.01 0.87 16 34 H 0.07 1.06 8.16 -2.27 -0.02 1.04 16 35 H 0.07 1.21 6.48 -2.27 -0.01 1.20 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.05 1.37 6.63 -2.39 -0.02 1.36 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.41 8.34 6.95 -92.70 -0.64 7.70 16 41 H 0.10 2.29 7.29 -2.39 -0.02 2.27 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.96 8.04 -2.38 -0.02 2.94 16 44 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.37 19.63 7.51 -74.06 -0.56 19.07 16 46 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.03 1.48 7.92 -2.39 -0.02 1.46 16 48 H 0.03 1.58 7.81 -2.39 -0.02 1.56 16 49 H 0.09 0.73 8.05 -2.25 -0.02 0.71 16 50 H 0.08 0.76 8.16 -2.27 -0.02 0.74 16 51 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.05 0.68 5.65 -2.38 -0.01 0.66 16 Total: -1.00 -69.39 405.06 -0.99 -70.38 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.27 Total: 40.15 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 5.82 Total: 18.93 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.16 Total: -101.71 kcal Atomic # 8 Polarization: -68.67 SS G_CDS: -3.41 Total: -72.08 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.39 -0.99 -70.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.655 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds