Wall clock time and date at job start Tue Mar 31 2020 23:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47896 * 2 1 4 4 C 1.53096 * 109.48214 * 239.97997 * 2 1 3 5 5 C 1.53181 * 109.16510 * 182.39623 * 4 2 1 6 6 C 1.52992 * 109.54734 * 176.84704 * 5 4 2 7 7 C 1.52997 * 109.47482 * 175.17614 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.47015 * 125.64954 * 0.02653 * 11 9 8 13 13 C 1.54329 * 107.27003 * 181.02266 * 12 11 9 14 14 C 1.55154 * 102.94412 * 22.19296 * 13 12 11 15 15 O 1.42904 * 111.00070 * 82.56987 * 14 13 12 16 16 C 1.50693 * 111.00787 * 206.38493 * 14 13 12 17 17 H 1.08005 * 120.00008 * 0.02562 * 16 14 13 18 18 C 1.37871 * 120.00467 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99666 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00364 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46968 * 59.99777 * 20 18 16 22 22 H 1.48502 * 109.46914 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47122 * 299.99789 * 20 18 16 24 24 C 1.47428 * 125.64618 * 179.72014 * 11 9 8 25 25 C 1.53174 * 109.10991 * 56.92925 * 5 4 2 26 26 C 1.53104 * 109.16133 * 303.16052 * 25 5 4 27 27 H 1.08996 * 109.48282 * 177.50242 * 26 25 5 28 28 C 1.53009 * 109.40130 * 297.48775 * 26 25 5 29 29 O 1.42894 * 109.48852 * 57.46912 * 26 25 5 30 30 H 1.09000 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47085 * 300.02304 * 1 2 3 32 32 H 1.08997 * 109.46947 * 60.02535 * 1 2 3 33 33 H 1.08998 * 109.52297 * 62.48736 * 4 2 1 34 34 H 1.08993 * 109.57513 * 302.32986 * 4 2 1 35 35 H 1.09006 * 109.54247 * 297.02638 * 5 4 2 36 36 H 1.09002 * 109.47103 * 55.17367 * 6 5 4 37 37 H 1.08998 * 109.46862 * 295.18179 * 6 5 4 38 38 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 39 39 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 41 41 H 1.09003 * 109.88485 * 300.43619 * 12 11 9 42 42 H 1.08995 * 109.88558 * 61.60968 * 12 11 9 43 43 H 1.09008 * 110.72031 * 140.55918 * 13 12 11 44 44 H 1.08997 * 110.72269 * 263.82915 * 13 12 11 45 45 H 0.96705 * 114.00100 * 179.97438 * 15 14 13 46 46 H 0.97004 * 119.99627 * 179.97438 * 19 18 16 47 47 H 1.08998 * 110.36795 * 274.74916 * 24 11 9 48 48 H 1.09000 * 110.36710 * 37.06946 * 24 11 9 49 49 H 1.09002 * 109.51935 * 62.97346 * 25 5 4 50 50 H 1.08994 * 109.52427 * 183.15806 * 25 5 4 51 51 H 1.09002 * 109.46714 * 179.97438 * 28 26 25 52 52 H 1.08993 * 109.47174 * 299.98677 * 28 26 25 53 53 H 1.08996 * 109.46735 * 59.99023 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5712 -0.7704 -1.2124 6 6 4.0879 -1.5588 -2.4175 7 6 5.6166 -1.5044 -2.4451 8 7 6.1114 -2.2599 -3.5988 9 6 7.4366 -2.3501 -3.8270 10 8 8.2215 -1.8050 -3.0754 11 7 7.8917 -3.0447 -4.8886 12 6 7.0575 -3.7488 -5.8734 13 6 8.0106 -4.4183 -6.8860 14 6 9.3400 -4.5257 -6.0933 15 8 9.3410 -5.6785 -5.2488 16 6 10.5246 -4.5410 -7.0247 17 1 10.3729 -4.4804 -8.0924 18 6 11.8020 -4.6325 -6.5141 19 7 11.9867 -4.7059 -5.2141 20 14 13.2703 -4.6522 -7.6688 21 1 13.2909 -3.3986 -8.4647 22 1 14.5218 -4.7555 -6.8762 23 1 13.1653 -5.8175 -8.5832 24 6 9.3082 -3.2188 -5.2582 25 6 4.0198 -1.4583 0.0805 26 6 3.4309 -0.7090 1.2788 27 1 3.7104 -1.2199 2.2001 28 6 3.9761 0.7205 1.3023 29 8 2.0069 -0.6741 1.1663 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.7147 -0.1842 -2.1399 34 1 1.6446 -1.7373 -1.2722 35 1 3.9689 0.2440 -1.2426 36 1 3.6921 -1.1218 -3.3343 37 1 3.7625 -2.5961 -2.3396 38 1 6.0124 -1.9414 -1.5283 39 1 5.9419 -0.4670 -2.5231 40 1 5.4852 -2.6944 -4.1986 41 1 6.4550 -4.5075 -5.3740 42 1 6.4108 -3.0378 -6.3874 43 1 7.6458 -5.4074 -7.1632 44 1 8.1375 -3.7916 -7.7687 45 1 10.1521 -5.7880 -4.7336 46 1 12.8855 -4.7706 -4.8549 47 1 9.6506 -2.3748 -5.8570 48 1 9.9232 -3.3251 -4.3646 49 1 3.6650 -2.4889 0.0869 50 1 5.1081 -1.4464 0.1407 51 1 3.5571 1.2551 2.1548 52 1 5.0623 0.6937 1.3881 53 1 3.6969 1.2309 0.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592020019.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:45 Heat of formation + Delta-G solvation = -166.909292 kcal Electronic energy + Delta-G solvation = -30564.106188 eV Core-core repulsion = 26433.906199 eV Total energy + Delta-G solvation = -4130.199989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.30852 -40.90862 -39.14802 -37.08287 -36.06541 -34.89973 -34.24783 -34.14806 -32.03332 -31.17014 -29.67938 -29.04503 -27.60585 -26.90280 -24.80056 -23.78587 -23.59916 -21.88957 -21.43872 -20.85249 -20.23283 -19.28056 -18.79922 -17.41010 -17.34544 -17.01220 -16.94304 -16.69175 -16.23804 -16.12851 -15.77820 -15.46477 -15.36250 -14.91298 -14.67701 -14.59446 -14.36572 -13.84441 -13.81183 -13.52767 -13.47685 -13.31796 -13.21500 -13.02326 -12.84259 -12.81748 -12.76864 -12.58382 -12.51888 -12.34104 -12.32097 -12.21808 -12.09247 -11.94697 -11.73952 -11.38025 -11.28309 -11.21274 -10.89688 -10.63931 -10.34913 -10.29632 -10.15764 -9.31030 -8.25149 -6.42357 1.44016 1.44478 1.52961 1.70143 2.15733 2.38526 2.86765 3.00800 3.09740 3.63264 3.71681 3.80939 3.82886 3.99066 4.11238 4.12702 4.16091 4.21774 4.28228 4.35080 4.37459 4.41854 4.46082 4.59330 4.62559 4.63004 4.66675 4.76431 4.78208 4.85710 4.92958 5.01211 5.02932 5.04669 5.05247 5.10104 5.14628 5.20128 5.25085 5.27394 5.31522 5.37395 5.40029 5.45659 5.50573 5.54077 5.77166 6.03080 6.19538 6.39824 6.64904 7.07933 7.30334 7.39331 7.58103 8.80269 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028109 B = 0.001926 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.888784 B =14534.167510 C =15038.359417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.064 0.936 4 C -0.137 4.137 5 C -0.083 4.083 6 C -0.110 4.110 7 C 0.138 3.862 8 N -0.730 5.730 9 C 0.707 3.293 10 O -0.647 6.647 11 N -0.634 5.634 12 C 0.108 3.892 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.556 4.556 17 H 0.072 0.928 18 C 0.023 3.977 19 N -0.919 5.919 20 Si 0.967 3.033 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.125 3.875 25 C -0.148 4.148 26 C 0.085 3.915 27 H 0.102 0.898 28 C -0.184 4.184 29 O -0.394 6.394 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.409 0.591 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.377 0.623 46 H 0.270 0.730 47 H 0.042 0.958 48 H 0.035 0.965 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.069 0.931 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.335 8.993 6.546 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.175 4.175 5 C -0.102 4.102 6 C -0.148 4.148 7 C 0.014 3.986 8 N -0.387 5.387 9 C 0.409 3.591 10 O -0.530 6.530 11 N -0.370 5.370 12 C -0.014 4.014 13 C -0.149 4.149 14 C 0.191 3.809 15 O -0.400 6.400 16 C -0.594 4.594 17 H 0.090 0.910 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.193 1.193 24 C 0.001 3.999 25 C -0.186 4.186 26 C 0.028 3.972 27 H 0.119 0.881 28 C -0.241 4.241 29 O -0.314 6.314 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.227 0.773 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.088 0.912 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.413 9.256 7.167 26.177 hybrid contribution 2.014 -0.089 -0.290 2.037 sum -21.399 9.167 6.877 24.275 Atomic orbital electron populations 1.21777 0.92334 1.02838 1.03072 1.22252 0.95564 0.95515 0.84854 0.91858 1.22224 0.94299 1.02145 0.98807 1.21128 0.95913 0.99705 0.93421 1.21736 0.91445 1.02011 0.99583 1.21303 0.95161 0.95112 0.86982 1.44966 1.03845 1.58088 1.31787 1.15802 0.83407 0.79364 0.80517 1.90839 1.57101 1.54556 1.50530 1.47851 1.09071 1.53441 1.26656 1.22117 0.93615 0.95935 0.89771 1.22611 0.93643 1.01320 0.97314 1.19899 0.93415 0.80935 0.86651 1.86046 1.44683 1.47790 1.61437 1.21819 0.91429 1.52014 0.94134 0.91001 1.25875 1.02041 0.93138 0.96689 1.69691 1.23573 1.50079 1.12536 0.85472 0.77746 0.78973 0.78627 1.19467 1.21230 1.19293 1.22734 0.79488 0.99518 0.98123 1.22306 1.01123 1.00090 0.95053 1.22196 0.80427 0.96026 0.98575 0.88052 1.22436 1.02043 0.96877 1.02773 1.87954 1.21274 1.78126 1.44058 0.92296 0.92238 0.89398 0.89211 0.91200 0.90336 0.89368 0.90484 0.93212 0.92893 0.75450 0.90961 0.89005 0.89639 0.89153 0.77274 0.92031 0.93960 0.94592 0.91424 0.91116 0.91829 0.91236 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 2 C 0.08 1.01 2.94 30.63 0.09 1.10 16 3 H 0.06 0.80 6.34 -2.39 -0.02 0.79 16 4 C -0.14 -1.62 4.71 30.69 0.14 -1.47 16 5 C -0.08 -1.15 1.96 -10.68 -0.02 -1.17 16 6 C -0.11 -1.63 4.80 30.59 0.15 -1.48 16 7 C 0.14 3.29 5.43 86.38 0.47 3.76 16 8 N -0.73 -20.73 5.52 -478.53 -2.64 -23.37 16 9 C 0.71 29.05 8.49 179.05 1.52 30.57 16 10 O -0.65 -32.81 16.60 -3.98 -0.07 -32.88 16 11 N -0.63 -26.20 3.32 -829.32 -2.76 -28.96 16 12 C 0.11 3.42 6.15 86.73 0.53 3.95 16 13 C -0.11 -4.12 6.12 31.78 0.19 -3.93 16 14 C 0.23 11.26 0.89 -10.07 -0.01 11.25 16 15 O -0.59 -30.98 13.19 -148.98 -1.97 -32.94 16 16 C -0.56 -28.84 8.25 25.60 0.21 -28.63 16 17 H 0.07 3.56 7.76 -2.91 -0.02 3.53 16 18 C 0.02 1.21 5.30 84.65 0.45 1.65 16 19 N -0.92 -50.74 10.72 21.45 0.23 -50.51 16 20 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 C 0.13 6.27 5.65 86.93 0.49 6.76 16 25 C -0.15 -2.41 4.60 30.69 0.14 -2.27 16 26 C 0.09 1.37 3.91 30.63 0.12 1.49 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 C -0.18 -2.62 8.65 71.99 0.62 -1.99 16 29 O -0.39 -7.16 10.24 -148.98 -1.53 -8.69 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.10 6.62 -2.38 -0.02 1.09 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.35 6.65 -2.39 -0.02 1.34 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 8.90 7.46 -92.71 -0.69 8.20 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 44 H 0.09 3.08 8.01 -2.39 -0.02 3.06 16 45 H 0.38 21.01 6.93 -74.05 -0.51 20.49 16 46 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.04 2.18 8.04 -2.39 -0.02 2.16 16 48 H 0.04 2.09 7.64 -2.39 -0.02 2.07 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 50 H 0.07 1.28 6.74 -2.39 -0.02 1.26 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.07 0.89 4.98 -2.39 -0.01 0.88 16 Total: -1.00 -69.26 405.48 -1.21 -70.46 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -0.30 Total: 44.33 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.79 Total: 18.75 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -5.17 Total: -102.84 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -3.56 Total: -74.51 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.26 -1.21 -70.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020019.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.447 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds