Wall clock time and date at job start Tue Mar 31 2020 23:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.48768 * 2 1 4 4 C 1.53091 * 109.48142 * 239.96966 * 2 1 3 5 5 C 1.53176 * 109.21206 * 182.43908 * 4 2 1 6 6 C 1.53003 * 109.53870 * 176.81585 * 5 4 2 7 7 C 1.53002 * 109.47073 * 175.00028 * 6 5 4 8 8 N 1.46502 * 109.47510 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99992 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99689 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.64718 * 0.02694 * 11 9 8 13 13 C 1.54912 * 104.82872 * 204.08828 * 12 11 9 14 14 C 1.55150 * 101.58312 * 322.99328 * 13 12 11 15 15 O 1.42900 * 110.72161 * 276.96047 * 14 13 12 16 16 C 1.50707 * 110.72060 * 153.86654 * 14 13 12 17 17 H 1.07995 * 119.99755 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99852 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00348 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99558 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47022 * 59.99884 * 20 18 16 22 22 H 1.48504 * 109.46857 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47265 * 299.99737 * 20 18 16 24 24 C 1.47026 * 125.64562 * 179.71427 * 11 9 8 25 25 C 1.53174 * 109.03724 * 56.94941 * 5 4 2 26 26 C 1.53084 * 109.16456 * 303.01556 * 25 5 4 27 27 H 1.09004 * 109.48326 * 177.59400 * 26 25 5 28 28 C 1.53004 * 109.48207 * 297.61742 * 26 25 5 29 29 O 1.42906 * 109.41372 * 57.61236 * 26 25 5 30 30 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47302 * 300.03038 * 1 2 3 32 32 H 1.08994 * 109.47100 * 60.03421 * 1 2 3 33 33 H 1.09002 * 109.52401 * 62.50061 * 4 2 1 34 34 H 1.09004 * 109.52068 * 302.37706 * 4 2 1 35 35 H 1.08997 * 109.54550 * 296.98990 * 5 4 2 36 36 H 1.08998 * 109.47393 * 294.99302 * 6 5 4 37 37 H 1.08994 * 109.47564 * 55.00387 * 6 5 4 38 38 H 1.09002 * 109.47232 * 300.00238 * 7 6 5 39 39 H 1.09005 * 109.47313 * 59.99665 * 7 6 5 40 40 H 0.97002 * 119.99273 * 0.02562 * 8 7 6 41 41 H 1.08993 * 110.36645 * 322.93016 * 12 11 9 42 42 H 1.09006 * 110.36270 * 85.14640 * 12 11 9 43 43 H 1.08998 * 111.00312 * 81.06731 * 13 12 11 44 44 H 1.08998 * 111.00373 * 204.87728 * 13 12 11 45 45 H 0.96696 * 114.00745 * 180.02562 * 15 14 13 46 46 H 0.96996 * 120.00201 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.88557 * 298.39709 * 24 11 9 48 48 H 1.08997 * 109.87738 * 59.56484 * 24 11 9 49 49 H 1.09007 * 109.52410 * 62.92341 * 25 5 4 50 50 H 1.09000 * 109.52423 * 183.04692 * 25 5 4 51 51 H 1.09001 * 109.46909 * 59.99654 * 28 26 25 52 52 H 1.08995 * 109.47076 * 179.97438 * 28 26 25 53 53 H 1.08997 * 109.46950 * 299.99526 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7722 -1.2129 6 6 4.0863 -1.5617 -2.4179 7 6 5.6150 -1.5053 -2.4488 8 7 6.1085 -2.2618 -3.6023 9 6 7.4333 -2.3506 -3.8331 10 8 8.2190 -1.8033 -3.0838 11 7 7.8873 -3.0461 -4.8946 12 6 7.0497 -3.7547 -5.8794 13 6 7.9736 -4.8479 -6.4720 14 6 9.3363 -4.1083 -6.5262 15 8 9.4307 -3.3078 -7.7062 16 6 10.4785 -5.0891 -6.4569 17 1 10.2774 -6.1474 -6.3805 18 6 11.7799 -4.6351 -6.4900 19 7 12.0247 -3.3463 -6.5825 20 14 13.1955 -5.8509 -6.4034 21 1 13.1133 -6.7889 -7.5518 22 1 14.4841 -5.1148 -6.4574 23 1 13.1144 -6.6154 -5.1330 24 6 9.2994 -3.2182 -5.2659 25 6 4.0177 -1.4613 0.0802 26 6 3.4322 -0.7096 1.2783 27 1 3.7115 -1.2205 2.1998 28 6 3.9790 0.7192 1.3012 29 8 2.0079 -0.6733 1.1665 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5143 0.8897 32 1 -0.3633 0.5133 -0.8902 33 1 1.7149 -0.1844 -2.1399 34 1 1.6434 -1.7372 -1.2714 35 1 3.9698 0.2417 -1.2437 36 1 3.7627 -2.5994 -2.3378 37 1 3.6883 -1.1266 -3.3346 38 1 5.9388 -0.4676 -2.5288 39 1 6.0132 -1.9404 -1.5321 40 1 5.4816 -2.6981 -4.2002 41 1 6.1898 -4.2100 -5.3883 42 1 6.7207 -3.0693 -6.6606 43 1 8.0254 -5.7148 -5.8134 44 1 7.6456 -5.1375 -7.4703 45 1 10.2643 -2.8247 -7.7883 46 1 12.9403 -3.0270 -6.6054 47 1 9.7470 -2.2481 -5.4815 48 1 9.8392 -3.7058 -4.4541 49 1 3.6604 -2.4912 0.0863 50 1 5.1060 -1.4530 0.1403 51 1 3.6992 1.2300 0.3798 52 1 3.5616 1.2543 2.1540 53 1 5.0653 0.6911 1.3856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592020020.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:49 Heat of formation + Delta-G solvation = -166.543547 kcal Electronic energy + Delta-G solvation = -30516.568123 eV Core-core repulsion = 26386.383994 eV Total energy + Delta-G solvation = -4130.184129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.33397 -40.91141 -39.19699 -37.09133 -36.09794 -34.90974 -34.24588 -34.17004 -31.98644 -31.16297 -29.71704 -29.04346 -27.60290 -26.91226 -24.80222 -23.84220 -23.60312 -21.89119 -21.44110 -20.88459 -20.22965 -19.25923 -18.83878 -17.52576 -17.34799 -17.07702 -16.85788 -16.68168 -16.34254 -16.00948 -15.78251 -15.44540 -15.33126 -14.77861 -14.76032 -14.68544 -14.38603 -13.92267 -13.78780 -13.54216 -13.49155 -13.36438 -13.18821 -13.02606 -12.85190 -12.82851 -12.76026 -12.58020 -12.53006 -12.34660 -12.33218 -12.28448 -12.08905 -11.94476 -11.73580 -11.37362 -11.27620 -11.19511 -10.89446 -10.63898 -10.32843 -10.27422 -10.21522 -9.40100 -8.27079 -6.42974 1.42396 1.43333 1.51351 1.67110 2.13045 2.37568 2.86621 2.99315 3.06211 3.63317 3.72180 3.81086 3.82653 3.99398 4.07909 4.12914 4.15095 4.20532 4.29068 4.36232 4.39273 4.42190 4.46249 4.58898 4.60137 4.62805 4.66856 4.71103 4.78366 4.85777 4.93201 5.01402 5.02545 5.03796 5.05178 5.13316 5.14661 5.20020 5.24296 5.26396 5.27673 5.36922 5.37673 5.48933 5.50448 5.53024 5.75608 6.01407 6.17676 6.40012 6.63556 7.05805 7.28886 7.38194 7.55927 8.79004 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.001933 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.539471 B =14482.695282 C =15009.118034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.062 0.938 4 C -0.137 4.137 5 C -0.083 4.083 6 C -0.110 4.110 7 C 0.138 3.862 8 N -0.729 5.729 9 C 0.708 3.292 10 O -0.647 6.647 11 N -0.636 5.636 12 C 0.108 3.892 13 C -0.111 4.111 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.557 4.557 17 H 0.069 0.931 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.139 3.861 25 C -0.147 4.147 26 C 0.085 3.915 27 H 0.103 0.897 28 C -0.184 4.184 29 O -0.394 6.394 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.410 0.590 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.378 0.622 46 H 0.271 0.729 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.062 0.938 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.687 5.097 10.367 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.080 0.920 4 C -0.175 4.175 5 C -0.102 4.102 6 C -0.148 4.148 7 C 0.014 3.986 8 N -0.386 5.386 9 C 0.410 3.590 10 O -0.529 6.529 11 N -0.372 5.372 12 C -0.014 4.014 13 C -0.148 4.148 14 C 0.192 3.808 15 O -0.398 6.398 16 C -0.596 4.596 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.014 3.986 25 C -0.185 4.185 26 C 0.028 3.972 27 H 0.120 0.880 28 C -0.242 4.242 29 O -0.314 6.314 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.229 0.771 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.081 0.919 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.750 5.348 10.993 26.712 hybrid contribution 2.060 -0.126 -0.146 2.069 sum -21.691 5.222 10.847 24.808 Atomic orbital electron populations 1.21777 0.92340 1.02867 1.03040 1.22244 0.95546 0.95484 0.84885 0.91994 1.22224 0.94350 1.02187 0.98731 1.21128 0.95888 0.99672 0.93533 1.21740 0.91426 1.02145 0.99477 1.21314 0.95195 0.95038 0.87036 1.44975 1.03773 1.57959 1.31935 1.15792 0.83479 0.79266 0.80498 1.90841 1.57079 1.54209 1.50805 1.47890 1.08964 1.53797 1.26592 1.22407 0.93952 0.93973 0.91055 1.22723 0.93321 0.96969 1.01833 1.19714 0.93703 0.86936 0.80418 1.86053 1.43691 1.65253 1.44831 1.21839 0.91475 0.94189 1.52051 0.91301 1.25846 1.01640 0.97066 0.93153 1.69675 1.21764 1.14160 1.50149 0.85501 0.77786 0.78848 0.78872 1.19134 1.20985 1.19856 1.22387 0.79278 0.98403 0.98498 1.22300 1.01182 1.00120 0.94886 1.22203 0.80398 0.95963 0.98663 0.87962 1.22437 1.02051 0.96966 1.02716 1.87951 1.21312 1.78160 1.44001 0.92220 0.92254 0.89467 0.89361 0.91061 0.90508 0.90146 0.89592 0.93193 0.92816 0.75350 0.87897 0.91083 0.89836 0.89053 0.77123 0.91956 0.95756 0.95253 0.91196 0.91040 0.91675 0.91871 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 71.98 0.69 -0.82 16 2 C 0.08 1.00 2.94 30.63 0.09 1.09 16 3 H 0.06 0.79 6.35 -2.39 -0.02 0.77 16 4 C -0.14 -1.57 4.70 30.68 0.14 -1.43 16 5 C -0.08 -1.12 1.96 -10.68 -0.02 -1.14 16 6 C -0.11 -1.55 4.80 30.60 0.15 -1.41 16 7 C 0.14 3.18 5.44 86.38 0.47 3.65 16 8 N -0.73 -20.08 5.52 -478.53 -2.64 -22.72 16 9 C 0.71 28.61 8.49 179.05 1.52 30.13 16 10 O -0.65 -32.38 16.67 -3.97 -0.07 -32.45 16 11 N -0.64 -26.17 3.33 -829.73 -2.76 -28.93 16 12 C 0.11 3.43 6.57 86.86 0.57 4.00 16 13 C -0.11 -4.13 6.23 31.98 0.20 -3.93 16 14 C 0.23 11.32 0.86 -10.35 -0.01 11.32 16 15 O -0.59 -30.11 13.08 -148.98 -1.95 -32.06 16 16 C -0.56 -29.29 8.11 25.60 0.21 -29.09 16 17 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 18 C 0.02 1.24 5.28 84.65 0.45 1.69 16 19 N -0.92 -50.42 10.97 21.45 0.24 -50.19 16 20 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.14 7.02 5.54 86.73 0.48 7.50 16 25 C -0.15 -2.26 4.61 30.68 0.14 -2.12 16 26 C 0.09 1.32 3.91 30.62 0.12 1.44 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 C -0.18 -2.57 8.66 71.98 0.62 -1.95 16 29 O -0.39 -6.97 10.24 -148.98 -1.53 -8.50 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 1.07 6.63 -2.39 -0.02 1.06 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.38 6.66 -2.38 -0.02 1.36 16 40 H 0.41 8.47 6.95 -92.71 -0.64 7.82 16 41 H 0.10 2.32 7.30 -2.39 -0.02 2.31 16 42 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.08 2.98 8.02 -2.39 -0.02 2.96 16 44 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.38 20.40 6.98 -74.06 -0.52 19.89 16 46 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 48 H 0.03 1.64 7.81 -2.39 -0.02 1.62 16 49 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.07 1.21 6.75 -2.39 -0.02 1.19 16 51 H 0.06 0.87 4.98 -2.39 -0.01 0.86 16 52 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -69.28 404.87 -1.11 -70.39 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: -0.26 Total: 41.28 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 5.82 Total: 18.93 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.16 Total: -101.84 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -3.54 Total: -73.00 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -69.28 -1.11 -70.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020020.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.153 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds