Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47501 * 2 1 4 4 O 1.42899 * 109.46978 * 120.00397 * 2 1 3 5 5 C 1.42898 * 114.00294 * 89.99903 * 4 2 1 6 6 H 1.09001 * 109.52597 * 30.07719 * 5 4 2 7 7 C 1.53039 * 109.49820 * 150.16311 * 5 4 2 8 8 C 1.53042 * 109.53855 * 181.31545 * 7 5 4 9 9 C 1.53629 * 109.23990 * 298.51205 * 8 7 5 10 10 N 1.46918 * 108.54409 * 54.85447 * 9 8 7 11 11 C 1.34782 * 120.63086 * 126.37206 * 10 9 8 12 12 O 1.21340 * 119.99957 * 174.16337 * 11 10 9 13 13 C 1.49452 * 119.99686 * 354.16169 * 11 10 9 14 14 O 1.21346 * 120.00019 * 353.75940 * 13 11 10 15 15 N 1.34774 * 119.99615 * 173.76295 * 13 11 10 16 16 C 1.46504 * 119.99581 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.46946 * 180.02562 * 16 15 13 18 18 C 1.53009 * 109.46997 * 299.99944 * 17 16 15 19 19 C 1.53000 * 109.47310 * 59.99749 * 17 16 15 20 20 C 1.50694 * 109.47151 * 179.97438 * 17 16 15 21 21 H 1.08006 * 120.00193 * 359.97438 * 20 17 16 22 22 C 1.37881 * 120.00174 * 179.97438 * 20 17 16 23 23 N 1.31512 * 119.99807 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00251 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47436 * 90.00057 * 24 22 20 26 26 H 1.48501 * 109.47184 * 210.00299 * 24 22 20 27 27 H 1.48498 * 109.47073 * 330.00090 * 24 22 20 28 28 C 1.46920 * 118.74039 * 306.09459 * 10 9 8 29 29 H 1.08995 * 109.46653 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.46932 * 59.99833 * 1 2 3 31 31 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47023 * 239.99778 * 2 1 3 33 33 H 1.08994 * 109.47438 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47164 * 300.00025 * 3 2 1 35 35 H 1.09007 * 109.47163 * 59.99864 * 3 2 1 36 36 H 1.09001 * 109.45912 * 301.33633 * 7 5 4 37 37 H 1.08996 * 109.46326 * 61.29180 * 7 5 4 38 38 H 1.09003 * 109.49864 * 58.58346 * 8 7 5 39 39 H 1.08997 * 109.49746 * 178.65064 * 8 7 5 40 40 H 1.08999 * 109.73495 * 295.11194 * 9 8 7 41 41 H 1.09007 * 109.66076 * 174.55093 * 9 8 7 42 42 H 0.96994 * 120.00256 * 359.97438 * 15 13 11 43 43 H 1.08994 * 109.47013 * 299.99598 * 16 15 13 44 44 H 1.09000 * 109.47280 * 60.00227 * 16 15 13 45 45 H 1.08995 * 109.47162 * 59.99701 * 18 17 16 46 46 H 1.08994 * 109.47237 * 180.02562 * 18 17 16 47 47 H 1.09007 * 109.46736 * 300.00142 * 18 17 16 48 48 H 1.08999 * 109.46827 * 60.00303 * 19 17 16 49 49 H 1.09004 * 109.46959 * 180.02562 * 19 17 16 50 50 H 1.09004 * 109.47082 * 300.00110 * 19 17 16 51 51 H 0.97004 * 119.99958 * 179.97438 * 23 22 20 52 52 H 1.08999 * 109.59067 * 173.64800 * 28 10 9 53 53 H 1.09003 * 109.58713 * 294.07091 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9886 6 1 2.4642 -2.2808 -0.0494 7 6 3.3271 -2.5588 1.9056 8 6 3.5574 -4.0566 1.6917 9 6 2.2771 -4.8230 2.0572 10 7 1.1617 -4.2672 1.2791 11 6 0.3825 -5.0693 0.5266 12 8 -0.5981 -4.6170 -0.0267 13 6 0.7264 -6.5156 0.3737 14 8 1.7654 -6.9439 0.8315 15 7 -0.1174 -7.3442 -0.2728 16 6 0.2195 -8.7621 -0.4222 17 6 -0.8973 -9.4736 -1.1887 18 6 -2.2113 -9.3401 -0.4162 19 6 -1.0520 -8.8376 -2.5717 20 6 -0.5505 -10.9319 -1.3430 21 1 0.3741 -11.3132 -0.9354 22 6 -1.4137 -11.7796 -2.0044 23 7 -2.5394 -11.3153 -2.5011 24 14 -0.9842 -13.5875 -2.1950 25 1 -1.5196 -14.3483 -1.0375 26 1 -1.5832 -14.1090 -3.4498 27 1 0.4916 -13.7426 -2.2493 28 6 0.9079 -2.8215 1.3417 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 4.2419 -2.0138 1.6729 37 1 3.0516 -2.3785 2.9447 38 1 3.8088 -4.2405 0.6471 39 1 4.3762 -4.3932 2.3277 40 1 2.0720 -4.7105 3.1218 41 1 2.4004 -5.8790 1.8164 42 1 -0.9480 -7.0019 -0.6384 43 1 1.1552 -8.8571 -0.9729 44 1 0.3300 -9.2151 0.5631 45 1 -2.4619 -8.2852 -0.3050 46 1 -3.0068 -9.8473 -0.9620 47 1 -2.1011 -9.7932 0.5691 48 1 -0.1159 -8.9327 -3.1220 49 1 -1.8479 -9.3442 -3.1176 50 1 -1.3026 -7.7826 -2.4605 51 1 -3.1465 -11.9116 -2.9668 52 1 0.1273 -2.5563 0.6286 53 1 0.5932 -2.5490 2.3491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593932734.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = -127.142678 kcal Electronic energy + Delta-G solvation = -31059.735850 eV Core-core repulsion = 26931.260271 eV Total energy + Delta-G solvation = -4128.475579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13343 -40.42244 -39.45877 -38.40532 -37.78699 -35.18285 -34.19989 -33.06972 -32.76138 -31.12694 -28.24823 -28.10681 -27.59172 -27.33700 -26.53632 -24.45598 -23.87662 -22.33863 -21.95260 -20.96260 -20.50513 -18.99809 -18.24706 -17.77745 -17.66190 -17.09677 -16.83372 -16.72682 -16.54381 -16.05075 -15.78710 -15.66222 -15.16110 -14.98103 -14.77819 -14.67872 -14.28532 -14.19974 -14.07042 -13.83670 -13.70265 -13.38135 -13.21897 -13.14353 -13.11337 -12.89471 -12.72542 -12.69890 -12.57958 -12.28287 -12.22725 -12.11712 -11.94537 -11.85080 -11.69636 -11.50871 -11.48522 -11.23975 -10.85638 -10.72788 -10.41214 -10.21245 -10.07658 -9.81387 -8.00991 -6.17319 0.26313 1.20612 1.44975 1.48185 1.55922 2.05667 2.36463 2.49379 2.66886 3.23094 3.25355 3.69252 3.72394 3.93664 3.96748 4.02903 4.12075 4.14854 4.26250 4.33924 4.42298 4.48245 4.51624 4.59418 4.67427 4.72683 4.76880 4.82430 4.86529 4.89657 4.94604 4.97587 4.99120 5.03535 5.06436 5.10819 5.17035 5.19383 5.27442 5.31596 5.33187 5.40688 5.57682 5.64420 5.68259 5.91821 6.10948 6.17533 6.19714 6.26967 6.41375 6.65575 6.86220 6.93593 7.50674 8.98221 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002229 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.092412 B =12561.236413 C =13310.204686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 C -0.144 4.144 4 O -0.379 6.379 5 C 0.084 3.916 6 H 0.059 0.941 7 C -0.113 4.113 8 C -0.120 4.120 9 C 0.038 3.962 10 N -0.572 5.572 11 C 0.508 3.492 12 O -0.546 6.546 13 C 0.503 3.497 14 O -0.527 6.527 15 N -0.677 5.677 16 C 0.143 3.857 17 C 0.049 3.951 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.523 4.523 21 H 0.053 0.947 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.948 3.052 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.272 1.272 28 C 0.083 3.917 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.412 0.588 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.062 0.938 50 H 0.028 0.972 51 H 0.259 0.741 52 H 0.086 0.914 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 22.199 7.581 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.297 6.297 5 C 0.025 3.975 6 H 0.077 0.923 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.082 4.082 10 N -0.306 5.306 11 C 0.291 3.709 12 O -0.424 6.424 13 C 0.284 3.716 14 O -0.408 6.408 15 N -0.328 5.328 16 C 0.020 3.980 17 C 0.049 3.951 18 C -0.182 4.182 19 C -0.182 4.182 20 C -0.561 4.561 21 H 0.072 0.928 22 C -0.175 4.175 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.197 1.197 28 C -0.039 4.039 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.081 0.919 50 H 0.047 0.953 51 H 0.069 0.931 52 H 0.104 0.896 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.098 22.176 7.669 25.545 hybrid contribution -0.658 -1.090 -0.659 1.434 sum 9.440 21.085 7.011 24.142 Atomic orbital electron populations 1.22460 0.95748 1.02125 1.03328 1.22403 0.94018 0.94744 0.87434 1.21846 1.01768 0.93269 1.03276 1.87933 1.86116 1.18875 1.36790 1.22430 0.94204 0.81086 0.99750 0.92256 1.21632 0.97616 0.95686 1.00086 1.21885 0.97458 0.93731 1.02729 1.23563 0.84442 1.04613 0.95575 1.47994 1.30937 1.07415 1.44219 1.20103 0.83358 0.87373 0.80074 1.90732 1.27150 1.76270 1.48261 1.20189 0.84434 0.87197 0.79737 1.90270 1.24901 1.76765 1.48822 1.46125 1.23010 1.10044 1.53624 1.21597 0.99060 0.77245 1.00086 1.18395 0.91077 0.93719 0.91955 1.21711 1.00460 0.97614 0.98419 1.21712 1.00641 0.96828 0.99030 1.21231 1.05326 0.93536 1.36043 0.92825 1.25514 0.94992 1.01859 0.95157 1.69931 1.10755 1.35800 1.37547 0.85707 0.78350 0.81208 0.77218 1.20560 1.21278 1.19659 1.22484 0.99247 0.78338 1.03829 0.91623 0.90364 0.93379 0.92138 0.91898 0.89736 0.91845 0.89840 0.90276 0.92221 0.87724 0.90069 0.83587 0.74980 0.92372 0.92186 0.95298 0.91880 0.95622 0.95684 0.91867 0.95323 0.93115 0.89616 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.32 71.98 0.67 -2.13 16 2 C 0.07 1.11 3.34 30.59 0.10 1.21 16 3 C -0.14 -1.69 9.56 71.98 0.69 -1.00 16 4 O -0.38 -7.00 9.66 -148.98 -1.44 -8.44 16 5 C 0.08 1.55 2.76 30.67 0.08 1.63 16 6 H 0.06 1.16 7.37 -2.39 -0.02 1.14 16 7 C -0.11 -1.69 5.53 30.62 0.17 -1.52 16 8 C -0.12 -1.93 6.10 30.82 0.19 -1.74 16 9 C 0.04 0.79 6.31 86.51 0.55 1.34 16 10 N -0.57 -14.15 2.97 -819.65 -2.43 -16.58 16 11 C 0.51 15.63 7.75 87.27 0.68 16.30 16 12 O -0.55 -18.95 15.93 -3.22 -0.05 -19.00 16 13 C 0.50 16.69 7.78 87.27 0.68 17.37 16 14 O -0.53 -17.98 13.08 -3.24 -0.04 -18.03 16 15 N -0.68 -23.95 4.95 -464.41 -2.30 -26.25 16 16 C 0.14 5.69 4.50 86.38 0.39 6.08 16 17 C 0.05 2.23 0.50 -52.93 -0.03 2.21 16 18 C -0.12 -5.57 8.08 71.99 0.58 -4.99 16 19 C -0.12 -5.60 8.08 71.98 0.58 -5.01 16 20 C -0.52 -26.66 8.01 25.60 0.21 -26.45 16 21 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 22 C 0.02 1.26 5.15 84.66 0.44 1.70 16 23 N -0.90 -48.02 9.35 21.45 0.20 -47.82 16 24 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.08 1.80 5.71 86.36 0.49 2.29 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.91 5.59 -2.39 -0.01 0.89 16 32 H 0.06 0.94 7.37 -2.38 -0.02 0.92 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.15 3.75 3.74 -81.49 -0.31 3.45 16 42 H 0.41 14.51 5.65 -92.71 -0.52 13.99 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 46 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 47 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 50 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 51 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 52 H 0.09 2.09 4.64 -2.39 -0.01 2.08 16 53 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -56.97 403.70 2.51 -54.45 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.09 Total: 30.56 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.46 Total: 7.28 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.53 Total: -90.65 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.53 Total: -45.47 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -56.97 2.51 -54.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932734.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.690 kcal (2) G-P(sol) polarization free energy of solvation -56.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds