Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99838 * 2 1 4 4 O 1.20829 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99977 * 180.02562 * 3 2 1 6 6 N 1.46892 * 109.47136 * 40.67472 * 5 3 2 7 7 C 1.46897 * 111.00073 * 58.57515 * 6 5 3 8 8 C 1.53007 * 109.46839 * 183.52534 * 7 6 5 9 9 C 1.50702 * 109.46763 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00283 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99980 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99541 * 359.97438 * 11 9 8 13 13 C 1.46501 * 119.99807 * 180.02562 * 11 9 8 14 14 C 1.50694 * 109.46869 * 269.99776 * 13 11 9 15 15 H 1.07998 * 120.00310 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99660 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99927 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47026 * 60.00628 * 18 16 14 20 20 H 1.48496 * 109.47295 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47484 * 300.00395 * 18 16 14 22 22 C 1.53004 * 109.46504 * 280.67371 * 5 3 2 23 23 C 1.52995 * 109.47182 * 299.99523 * 22 5 3 24 24 C 1.53002 * 109.47558 * 300.00402 * 23 22 5 25 25 H 1.08999 * 109.46788 * 300.00102 * 24 23 22 26 26 C 1.53002 * 109.47100 * 179.97438 * 24 23 22 27 27 C 1.52996 * 109.46942 * 59.99988 * 24 23 22 28 28 C 1.53002 * 109.47221 * 299.99923 * 27 24 23 29 29 H 1.09007 * 109.47060 * 299.99566 * 1 2 3 30 30 H 1.09007 * 109.47458 * 59.99589 * 1 2 3 31 31 H 1.09005 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.00894 * 111.00024 * 182.53600 * 6 5 3 33 33 H 1.08999 * 109.47116 * 63.53294 * 7 6 5 34 34 H 1.08991 * 109.47566 * 303.52873 * 7 6 5 35 35 H 1.08997 * 109.47100 * 60.00743 * 8 7 6 36 36 H 1.08999 * 109.47513 * 299.99893 * 8 7 6 37 37 H 1.08994 * 109.47001 * 269.99454 * 12 11 9 38 38 H 1.08994 * 109.47373 * 30.00510 * 12 11 9 39 39 H 1.09001 * 109.46620 * 150.00208 * 12 11 9 40 40 H 1.08999 * 109.47289 * 30.00420 * 13 11 9 41 41 H 1.09001 * 109.46590 * 149.99877 * 13 11 9 42 42 H 0.96999 * 120.00389 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.47002 * 60.00217 * 22 5 3 44 44 H 1.09007 * 109.46730 * 179.97438 * 22 5 3 45 45 H 1.09005 * 109.47168 * 180.02562 * 23 22 5 46 46 H 1.09001 * 109.46730 * 60.00916 * 23 22 5 47 47 H 1.08994 * 109.47164 * 300.00120 * 26 24 23 48 48 H 1.08996 * 109.47102 * 59.99917 * 26 24 23 49 49 H 1.08996 * 109.46805 * 180.02562 * 26 24 23 50 50 H 1.08996 * 109.47192 * 180.02562 * 27 24 23 51 51 H 1.09007 * 109.47169 * 60.00112 * 27 24 23 52 52 H 1.08994 * 109.47164 * 300.00054 * 28 27 24 53 53 H 1.08997 * 109.47135 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1099 0.2518 -0.9036 7 6 3.6006 0.4312 -2.2698 8 6 4.1176 -0.7012 -3.1595 9 6 3.5956 -0.5168 -4.5612 10 8 2.8810 0.4276 -4.8229 11 7 3.9230 -1.4013 -5.5240 12 6 4.7866 -2.5417 -5.2080 13 6 3.4160 -1.2217 -6.8868 14 6 2.0970 -1.9363 -7.0302 15 1 1.6781 -2.4705 -6.1903 16 6 1.4251 -1.9082 -8.2340 17 7 1.9356 -1.2581 -9.2569 18 14 -0.2094 -2.7946 -8.4121 19 1 -1.1851 -2.2331 -7.4435 20 1 -0.7228 -2.6134 -9.7937 21 1 -0.0198 -4.2422 -8.1408 22 6 4.0900 1.0344 1.4168 23 6 3.5239 2.1001 2.3573 24 6 3.9617 3.4863 1.8800 25 1 5.0502 3.5433 1.8797 26 6 3.3950 4.5520 2.8203 27 6 3.4379 3.7267 0.4628 28 6 4.0042 2.6610 -0.4778 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 5.1187 0.2568 -0.8902 33 1 3.9444 1.3879 -2.6630 34 1 2.5110 0.4143 -2.2565 35 1 3.7738 -1.6579 -2.7664 36 1 5.2073 -0.6842 -3.1729 37 1 5.8285 -2.2627 -5.3645 38 1 4.6402 -2.8310 -4.1674 39 1 4.5336 -3.3799 -5.8572 40 1 3.2771 -0.1590 -7.0856 41 1 4.1319 -1.6339 -7.5979 42 1 1.4631 -1.2386 -10.1038 43 1 3.7781 0.0470 1.7567 44 1 5.1786 1.0911 1.4163 45 1 3.8973 1.9291 3.3670 46 1 2.4353 2.0430 2.3577 47 1 2.3065 4.4947 2.8202 48 1 3.7677 4.3809 3.8301 49 1 3.7065 5.5394 2.4800 50 1 3.7502 4.7140 0.1226 51 1 2.3494 3.6696 0.4632 52 1 5.0926 2.7181 -0.4782 53 1 3.6307 2.8320 -1.4874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595706689.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -153.040106 kcal Electronic energy + Delta-G solvation = -31483.302463 eV Core-core repulsion = 27353.703887 eV Total energy + Delta-G solvation = -4129.598576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.35431 -40.66283 -39.56075 -37.50271 -36.95572 -36.50090 -34.76233 -33.41836 -31.82932 -30.76999 -29.42881 -28.90875 -27.31769 -26.64722 -25.25513 -24.24865 -23.98889 -22.92251 -21.23556 -20.88658 -19.97337 -18.71567 -18.58201 -17.92846 -17.78355 -17.15373 -17.01403 -16.80793 -16.55425 -15.95924 -15.71989 -15.43030 -15.13733 -15.03663 -14.91833 -14.46857 -14.29376 -14.15513 -13.97407 -13.63062 -13.51274 -13.49918 -13.43558 -13.21555 -13.18935 -13.00882 -12.88253 -12.81766 -12.71367 -12.55438 -12.33177 -12.20390 -12.19237 -11.98683 -11.81400 -11.73732 -11.71091 -11.37978 -11.10308 -10.68271 -10.66005 -10.61274 -9.56410 -9.41246 -8.24012 -6.39038 1.09853 1.34427 1.38966 1.46235 1.73467 1.84649 2.27320 2.40631 2.95357 3.05249 3.44735 3.62426 3.79895 3.81671 3.92165 3.99984 4.07606 4.13544 4.21043 4.23237 4.26036 4.40407 4.44071 4.46803 4.58763 4.61805 4.64182 4.68093 4.74982 4.77224 4.84753 4.89110 4.93007 4.96580 4.99367 5.03837 5.07278 5.10251 5.18855 5.21406 5.22100 5.31676 5.37176 5.43703 5.55042 5.63753 5.79420 5.83950 6.04978 6.35549 6.68286 6.74576 6.79831 7.26811 7.48990 8.82798 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002563 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.717657 B =10920.659355 C =11490.683055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.471 3.529 4 O -0.528 6.528 5 C 0.132 3.868 6 N -0.655 5.655 7 C 0.080 3.920 8 C -0.113 4.113 9 C 0.492 3.508 10 O -0.606 6.606 11 N -0.611 5.611 12 C 0.077 3.923 13 C 0.258 3.742 14 C -0.543 4.543 15 H 0.052 0.948 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.279 1.279 20 H -0.278 1.278 21 H -0.258 1.258 22 C -0.098 4.098 23 C -0.117 4.117 24 C -0.086 4.086 25 H 0.087 0.913 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.370 0.630 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.063 0.937 40 H -0.006 1.006 41 H 0.024 0.976 42 H 0.267 0.733 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.037 0.963 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.102 0.898 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 2.072 27.704 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.315 3.685 4 O -0.417 6.417 5 C 0.040 3.960 6 N -0.289 5.289 7 C -0.050 4.050 8 C -0.153 4.153 9 C 0.281 3.719 10 O -0.488 6.488 11 N -0.342 5.342 12 C -0.064 4.064 13 C 0.137 3.863 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.205 1.205 20 H -0.203 1.203 21 H -0.182 1.182 22 C -0.135 4.135 23 C -0.155 4.155 24 C -0.104 4.104 25 H 0.106 0.894 26 C -0.203 4.203 27 C -0.176 4.176 28 C -0.175 4.175 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.192 0.808 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.012 0.988 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.111 0.889 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.096 0.904 52 H 0.121 0.879 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.372 2.352 27.524 28.865 hybrid contribution -1.179 0.847 -1.457 2.056 sum 7.193 3.199 26.067 27.230 Atomic orbital electron populations 1.23474 0.76024 1.05372 1.01876 1.86605 1.23746 1.32980 1.83013 1.24158 0.92689 0.81021 0.70589 1.90525 1.67702 1.36585 1.46876 1.20954 0.85611 0.91900 0.97574 1.60478 1.15001 1.47337 1.06079 1.21489 0.98814 0.96724 0.87985 1.21487 1.03859 1.01564 0.88388 1.21443 0.80291 0.81667 0.88501 1.90646 1.40328 1.34081 1.83774 1.48205 1.49151 1.26462 1.10368 1.21970 0.93707 0.87791 1.02975 1.18736 0.93585 0.95226 0.78802 1.21679 1.06452 1.32937 0.97101 0.92934 1.25886 1.01825 0.96281 0.95323 1.70043 1.40826 1.43150 1.02844 0.85477 0.78725 0.79463 0.77216 1.20501 1.20258 1.18187 1.21611 1.02979 1.00256 0.88682 1.21664 0.99685 0.94111 1.00007 1.21125 1.00943 0.94681 0.93668 0.89425 1.21794 1.00295 0.98514 0.99647 1.22031 1.03112 0.97527 0.94915 1.22169 1.02510 0.93773 0.99030 0.91182 0.93749 0.85505 0.80776 0.95070 0.94189 0.86368 0.85320 0.90823 0.88360 0.91818 0.98761 0.95751 0.92384 0.89623 0.87112 0.88860 0.94390 0.94184 0.91257 0.92537 0.92255 0.90396 0.87926 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.35 -9.36 10.00 -51.34 -0.51 -9.88 16 3 C 0.47 12.88 4.10 71.24 0.29 13.18 16 4 O -0.53 -16.90 12.69 21.95 0.28 -16.62 16 5 C 0.13 2.65 0.67 2.79 0.00 2.65 16 6 N -0.65 -12.49 5.90 -473.90 -2.80 -15.28 16 7 C 0.08 2.23 4.25 86.31 0.37 2.60 16 8 C -0.11 -3.00 4.54 29.85 0.14 -2.86 16 9 C 0.49 20.59 7.67 87.66 0.67 21.26 16 10 O -0.61 -32.53 15.56 -3.03 -0.05 -32.58 16 11 N -0.61 -26.03 2.86 -851.14 -2.43 -28.46 16 12 C 0.08 2.22 10.24 127.77 1.31 3.53 16 13 C 0.26 14.25 5.16 85.63 0.44 14.69 16 14 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.34 5.46 84.66 0.46 0.80 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 18 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 C -0.10 -1.30 5.00 30.59 0.15 -1.14 16 23 C -0.12 -1.64 4.98 30.59 0.15 -1.49 16 24 C -0.09 -1.25 2.72 -10.79 -0.03 -1.27 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 C -0.15 -2.01 9.19 71.98 0.66 -1.35 16 27 C -0.14 -2.85 4.90 30.59 0.15 -2.70 16 28 C -0.14 -2.79 4.34 30.60 0.13 -2.65 16 29 H 0.07 1.40 8.13 -2.38 -0.02 1.38 16 30 H 0.04 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.37 4.56 8.77 -89.70 -0.79 3.77 16 33 H 0.03 0.96 6.48 -2.39 -0.02 0.95 16 34 H 0.04 1.44 6.61 -2.39 -0.02 1.42 16 35 H 0.12 2.74 7.40 -2.39 -0.02 2.73 16 36 H 0.13 2.35 8.11 -2.39 -0.02 2.33 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 2.06 6.44 -2.39 -0.02 2.05 16 39 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 40 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 41 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.04 0.72 7.02 -2.39 -0.02 0.70 16 47 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 2.12 4.95 -2.95 -0.01 2.10 16 52 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.04 1.14 6.51 -2.39 -0.02 1.13 16 Total: -1.00 -82.54 412.12 3.24 -79.30 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.10 Total: 17.53 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.34 Total: 15.24 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -4.94 Total: -100.73 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.28 Total: -59.08 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -82.54 3.24 -79.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595706689.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.741 kcal (2) G-P(sol) polarization free energy of solvation -82.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds