Wall clock time and date at job start Tue Mar 31 2020 23:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.52532 * 2 1 4 4 C 1.53043 * 109.49877 * 239.91732 * 2 1 3 5 5 C 1.53042 * 109.53623 * 301.41455 * 4 2 1 6 6 C 1.53628 * 109.23931 * 298.51026 * 5 4 2 7 7 N 1.46920 * 108.54306 * 54.85960 * 6 5 4 8 8 C 1.34778 * 120.63296 * 126.36383 * 7 6 5 9 9 O 1.21352 * 120.00381 * 188.70378 * 8 7 6 10 10 C 1.49453 * 119.99538 * 8.70854 * 8 7 6 11 11 O 1.21344 * 120.00506 * 6.54452 * 10 8 7 12 12 N 1.34784 * 119.99771 * 186.54236 * 10 8 7 13 13 C 1.46500 * 119.99755 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46906 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47276 * 300.00067 * 14 13 12 16 16 C 1.53002 * 109.47076 * 60.00156 * 14 13 12 17 17 C 1.50695 * 109.47228 * 179.97438 * 14 13 12 18 18 H 1.08001 * 120.00112 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00492 * 179.97438 * 17 14 13 20 20 N 1.31526 * 119.99391 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00336 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47012 * 120.00242 * 21 19 17 24 24 H 1.48499 * 109.47138 * 239.99772 * 21 19 17 25 25 C 1.46925 * 118.74100 * 306.09160 * 7 6 5 26 26 H 1.09003 * 109.58251 * 294.07596 * 25 7 6 27 27 C 1.52998 * 109.58817 * 173.65058 * 25 7 6 28 28 C 1.53004 * 109.46682 * 179.08039 * 27 25 7 29 29 O 1.42904 * 109.46861 * 175.86151 * 28 27 25 30 30 H 1.08995 * 109.47470 * 299.92338 * 1 2 3 31 31 H 1.09004 * 109.47098 * 59.92312 * 1 2 3 32 32 H 1.09002 * 109.47121 * 179.91677 * 1 2 3 33 33 H 1.08995 * 109.45991 * 61.43637 * 4 2 1 34 34 H 1.09005 * 109.46001 * 181.40751 * 4 2 1 35 35 H 1.08995 * 109.49920 * 58.58552 * 5 4 2 36 36 H 1.08999 * 109.49761 * 178.68347 * 5 4 2 37 37 H 1.08992 * 109.74218 * 295.11416 * 6 5 4 38 38 H 1.09004 * 109.65859 * 174.54994 * 6 5 4 39 39 H 0.96996 * 119.99594 * 0.02562 * 12 10 8 40 40 H 1.08995 * 109.47053 * 60.00811 * 13 12 10 41 41 H 1.08998 * 109.47116 * 299.99903 * 13 12 10 42 42 H 1.09007 * 109.46916 * 60.00098 * 15 14 13 43 43 H 1.08996 * 109.47395 * 179.97438 * 15 14 13 44 44 H 1.08992 * 109.46883 * 300.00507 * 15 14 13 45 45 H 1.08997 * 109.47111 * 59.99980 * 16 14 13 46 46 H 1.09004 * 109.47004 * 179.97438 * 16 14 13 47 47 H 1.08999 * 109.47368 * 299.99697 * 16 14 13 48 48 H 0.97000 * 119.99605 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.47059 * 299.07485 * 27 25 7 50 50 H 1.08996 * 109.47032 * 59.08007 * 27 25 7 51 51 H 1.08999 * 109.47379 * 295.85780 * 28 27 25 52 52 H 1.08995 * 109.47581 * 55.86495 * 28 27 25 53 53 H 0.96700 * 114.00040 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1558 -1.2659 6 6 2.0189 -2.9055 -0.0282 7 7 1.6515 -2.1381 1.1696 8 6 0.9747 -2.7219 2.1784 9 8 0.5394 -2.0467 3.0879 10 6 0.7603 -4.2010 2.1768 11 8 1.2946 -4.8907 1.3334 12 7 -0.0266 -4.7688 3.1122 13 6 -0.2372 -6.2186 3.1103 14 6 -1.1638 -6.6008 4.2663 15 6 -0.5259 -6.1798 5.5918 16 6 -2.5082 -5.8899 4.0988 17 6 -1.3810 -8.0921 4.2641 18 1 -0.9054 -8.7059 3.5135 19 6 -2.1860 -8.6730 5.2208 20 7 -2.7648 -7.9255 6.1352 21 14 -2.4546 -10.5216 5.2184 22 1 -1.6976 -11.1302 4.0953 23 1 -1.9775 -11.0928 6.5035 24 1 -3.9019 -10.8112 5.0552 25 6 2.0412 -0.7237 1.2496 26 1 3.1274 -0.6462 1.2981 27 6 1.4228 -0.0911 2.4979 28 6 1.8490 1.3754 2.5908 29 8 1.1952 1.9920 3.7019 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6989 -0.1959 -2.1389 34 1 3.1306 -0.7447 -1.2351 35 1 0.4133 -2.1355 -1.2540 36 1 1.8481 -2.6629 -2.1670 37 1 3.1032 -3.0023 -0.0818 38 1 1.5635 -3.8947 0.0177 39 1 -0.4540 -4.2175 3.7861 40 1 0.7206 -6.7250 3.2293 41 1 -0.6921 -6.5185 2.1662 42 1 -0.3693 -5.1011 5.5932 43 1 -1.1862 -6.4517 6.4153 44 1 0.4318 -6.6862 5.7111 45 1 -2.9626 -6.1899 3.1545 46 1 -3.1685 -6.1626 4.9221 47 1 -2.3516 -4.8113 4.1002 48 1 -3.3315 -8.3342 6.8081 49 1 0.3362 -0.1504 2.4349 50 1 1.7652 -0.6258 3.3838 51 1 2.9289 1.4321 2.7276 52 1 1.5714 1.8934 1.6728 53 1 1.4194 2.9249 3.8220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597341755.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:43 Heat of formation + Delta-G solvation = -123.888997 kcal Electronic energy + Delta-G solvation = -31906.595791 eV Core-core repulsion = 27778.261303 eV Total energy + Delta-G solvation = -4128.334489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.36305 -40.51127 -38.87454 -38.31282 -37.72670 -35.33806 -34.53149 -33.99821 -32.75295 -30.42156 -28.23076 -27.72586 -27.61117 -27.29232 -26.29363 -24.70367 -23.92246 -22.22368 -21.48042 -20.69790 -19.82494 -18.78002 -18.38829 -17.82539 -17.58229 -17.15523 -16.85961 -16.64315 -16.53185 -16.11340 -15.81728 -15.48162 -15.18763 -15.03270 -14.78928 -14.62982 -14.37512 -14.26295 -14.16364 -14.03779 -13.61593 -13.24925 -13.18049 -13.09149 -12.84822 -12.72740 -12.68116 -12.55431 -12.46773 -12.29728 -12.13791 -12.01607 -11.84769 -11.60555 -11.52900 -11.42247 -11.26259 -11.09780 -10.77051 -10.73400 -10.42348 -10.15647 -9.87986 -9.62456 -8.02430 -6.19212 0.35674 1.31216 1.42760 1.46997 1.56341 2.12831 2.41842 2.53404 3.21521 3.22151 3.43129 3.70186 3.85322 3.89564 4.07103 4.16142 4.28504 4.33147 4.36324 4.44433 4.46098 4.50033 4.58247 4.62763 4.65962 4.69273 4.75463 4.86308 4.96398 4.97954 5.01754 5.04122 5.06543 5.13386 5.15072 5.18939 5.20491 5.28874 5.32399 5.37388 5.46724 5.51875 5.62671 5.66539 5.67181 6.00762 6.08856 6.17468 6.28753 6.39889 6.74229 6.85715 6.95948 6.99555 7.49052 8.97108 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.002682 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.325975 B =10438.163538 C =11445.076477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.067 3.933 7 N -0.569 5.569 8 C 0.505 3.495 9 O -0.531 6.531 10 C 0.494 3.506 11 O -0.537 6.537 12 N -0.681 5.681 13 C 0.144 3.856 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.525 4.525 18 H 0.052 0.948 19 C 0.025 3.975 20 N -0.902 5.902 21 Si 0.949 3.051 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.149 3.851 26 H 0.097 0.903 27 C -0.111 4.111 28 C 0.072 3.928 29 O -0.598 6.598 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.411 0.589 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.260 0.740 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.058 0.942 52 H 0.067 0.933 53 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 20.363 -14.442 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.126 0.874 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.054 4.054 7 N -0.302 5.302 8 C 0.287 3.713 9 O -0.409 6.409 10 C 0.275 3.725 11 O -0.417 6.417 12 N -0.332 5.332 13 C 0.021 3.979 14 C 0.050 3.950 15 C -0.181 4.181 16 C -0.180 4.180 17 C -0.564 4.564 18 H 0.071 0.929 19 C -0.174 4.174 20 N -0.541 5.541 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.047 3.953 26 H 0.114 0.886 27 C -0.149 4.149 28 C -0.006 4.006 29 O -0.407 6.407 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.085 0.915 53 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.098 19.602 -14.334 26.700 hybrid contribution -0.394 -0.602 0.717 1.016 sum 10.704 19.000 -13.617 25.710 Atomic orbital electron populations 1.21892 0.95638 1.01099 1.01885 1.21619 0.96002 1.00466 0.93699 0.87386 1.21583 1.01315 0.94603 0.97331 1.22052 1.00960 0.96805 0.97380 1.22999 1.01935 0.97916 0.82572 1.47990 1.53105 1.11602 1.17521 1.20069 0.80013 0.87801 0.83389 1.90850 1.49105 1.63334 1.37568 1.20561 0.80202 0.89469 0.82239 1.90458 1.49716 1.64569 1.36990 1.46120 1.46507 1.10052 1.30546 1.21539 0.99317 0.77156 0.99844 1.18370 0.91350 0.94809 0.90427 1.21701 0.98951 0.96529 1.00932 1.21695 0.99720 0.96078 1.00555 1.21279 1.29324 0.92294 1.13492 0.92927 1.25520 0.95315 1.01510 0.95076 1.69946 1.31859 1.35804 1.16468 0.85638 0.77641 0.81334 0.77782 1.19508 1.20939 1.20876 1.21531 0.99580 0.78430 0.95740 0.88563 1.21953 1.01933 0.94172 0.96812 1.22391 0.96105 0.93120 0.88976 1.86492 1.72229 1.30509 1.51434 0.93339 0.91130 0.94439 0.89939 0.90243 0.92437 0.89022 0.90077 0.86308 0.75121 0.92752 0.92563 0.95433 0.91817 0.95787 0.95691 0.91843 0.95430 0.93069 0.91539 0.92420 0.92334 0.91456 0.75424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.20 71.98 0.59 -1.95 16 2 C -0.10 -1.31 2.33 -10.72 -0.03 -1.34 16 3 H 0.11 0.93 6.69 -2.39 -0.02 0.92 16 4 C -0.11 -1.20 5.43 30.62 0.17 -1.04 16 5 C -0.13 -2.04 5.75 30.82 0.18 -1.86 16 6 C 0.07 1.39 6.01 86.51 0.52 1.91 16 7 N -0.57 -13.63 2.40 -795.77 -1.91 -15.54 16 8 C 0.50 15.75 7.64 87.27 0.67 16.41 16 9 O -0.53 -18.47 11.93 -3.25 -0.04 -18.51 16 10 C 0.49 17.25 7.74 87.27 0.68 17.92 16 11 O -0.54 -19.57 13.18 -3.23 -0.04 -19.61 16 12 N -0.68 -25.41 4.95 -464.41 -2.30 -27.70 16 13 C 0.14 6.04 4.50 86.38 0.39 6.43 16 14 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 15 C -0.12 -5.75 8.08 71.98 0.58 -5.17 16 16 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 17 C -0.53 -27.54 8.01 25.60 0.21 -27.34 16 18 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 19 C 0.03 1.34 5.15 84.65 0.44 1.78 16 20 N -0.90 -48.93 9.35 21.45 0.20 -48.73 16 21 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.15 2.75 2.70 44.97 0.12 2.88 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 27 C -0.11 -2.60 3.05 30.60 0.09 -2.50 16 28 C 0.07 1.19 6.84 71.98 0.49 1.68 16 29 O -0.60 -12.13 13.66 -148.98 -2.04 -14.16 16 30 H 0.05 0.96 6.32 -2.39 -0.02 0.95 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.04 0.81 5.97 -2.39 -0.01 0.80 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 1.04 6.33 -2.39 -0.02 1.03 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 3.19 4.32 -47.58 -0.21 2.99 16 39 H 0.41 15.29 5.65 -92.71 -0.52 14.77 16 40 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.03 1.14 6.86 -2.38 -0.02 1.12 16 43 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 47 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 48 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 49 H 0.07 1.92 5.11 -2.39 -0.01 1.91 16 50 H 0.06 1.73 6.49 -2.39 -0.02 1.71 16 51 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.79 6.40 -2.39 -0.02 0.77 16 53 H 0.40 3.72 9.12 -74.06 -0.68 3.05 16 Total: -1.00 -63.62 390.25 1.09 -62.53 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.46 Total: 32.12 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.64 Total: 5.08 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -4.01 Total: -91.97 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -2.12 Total: -52.28 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.62 1.09 -62.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597341755.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.357 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds