Wall clock time and date at job start Wed Apr 1 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49532 * 2 1 4 4 C 1.53195 * 109.49472 * 239.93876 * 2 1 3 5 5 N 1.46920 * 108.89195 * 185.31122 * 4 2 1 6 6 C 1.34777 * 120.62966 * 233.67449 * 5 4 2 7 7 O 1.21583 * 120.00198 * 174.77556 * 6 5 4 8 8 N 1.34781 * 120.00020 * 354.77097 * 6 5 4 9 9 C 1.46501 * 120.00112 * 184.98394 * 8 6 5 10 10 C 1.53000 * 109.46960 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46609 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00660 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99892 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99819 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00350 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47235 * 59.99791 * 15 13 11 17 17 H 1.48500 * 109.47440 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46727 * 299.99730 * 15 13 11 19 19 C 1.47201 * 118.55840 * 53.54059 * 5 4 2 20 20 C 1.53194 * 108.85260 * 306.47852 * 19 5 4 21 21 C 1.53034 * 109.52352 * 120.08997 * 2 1 3 22 22 H 1.08993 * 109.46741 * 61.30450 * 21 2 1 23 23 C 1.50706 * 109.45749 * 301.33250 * 21 2 1 24 24 O 1.20820 * 119.99897 * 0.02562 * 23 21 2 25 25 O 1.34226 * 119.99709 * 180.02562 * 23 21 2 26 26 C 1.45205 * 116.99950 * 180.02562 * 25 23 21 27 27 C 1.53005 * 109.46963 * 59.99962 * 26 25 23 28 28 C 1.52992 * 109.47411 * 179.97438 * 26 25 23 29 29 C 1.52997 * 109.47115 * 300.00246 * 26 25 23 30 30 H 1.08994 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46557 * 300.06326 * 1 2 3 32 32 H 1.09000 * 109.47182 * 60.05818 * 1 2 3 33 33 H 1.09008 * 109.58625 * 305.16951 * 4 2 1 34 34 H 1.09004 * 109.58299 * 65.44960 * 4 2 1 35 35 H 0.96996 * 119.99952 * 4.98544 * 8 6 5 36 36 H 1.09007 * 109.46767 * 300.00070 * 9 8 6 37 37 H 1.09002 * 109.47181 * 59.99860 * 9 8 6 38 38 H 1.08994 * 109.46934 * 299.99689 * 10 9 8 39 39 H 1.08997 * 109.46935 * 60.00503 * 10 9 8 40 40 H 0.97001 * 120.00263 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.53945 * 186.66968 * 19 5 4 42 42 H 1.09004 * 109.67937 * 66.36696 * 19 5 4 43 43 H 1.08997 * 109.49857 * 294.69546 * 20 19 5 44 44 H 1.09001 * 109.52173 * 174.61662 * 20 19 5 45 45 H 1.09001 * 109.46952 * 59.99815 * 27 26 25 46 46 H 1.09003 * 109.47201 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.46973 * 300.00441 * 27 26 25 48 48 H 1.09002 * 109.47131 * 59.99934 * 28 26 25 49 49 H 1.09007 * 109.47334 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.47503 * 299.99918 * 28 26 25 51 51 H 1.09004 * 109.47094 * 59.99962 * 29 26 25 52 52 H 1.09003 * 109.47411 * 179.97438 * 29 26 25 53 53 H 1.09001 * 109.47377 * 300.00117 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5048 -0.8280 -1.1738 6 6 4.2784 -0.3834 -2.1838 7 8 5.4889 -0.3879 -2.0699 8 7 3.7103 0.0662 -3.3203 9 6 4.5505 0.4468 -4.4585 10 6 3.6631 0.9192 -5.6120 11 6 4.5275 1.3112 -6.7825 12 1 5.6022 1.2311 -6.7112 13 6 3.9463 1.7723 -7.9448 14 7 2.6377 1.8694 -8.0320 15 14 5.0176 2.2576 -9.3960 16 1 5.8170 1.0856 -9.8351 17 1 4.1564 2.7162 -10.5156 18 1 5.9310 3.3564 -8.9914 19 6 4.1059 -1.4256 0.0297 20 6 3.5715 -0.6944 1.2652 21 6 2.0415 -0.7231 1.2480 22 1 1.6978 -1.7574 1.2349 23 6 1.5128 -0.0340 2.4796 24 8 0.8000 0.9354 2.3703 25 8 1.8339 -0.4972 3.6978 26 6 1.2884 0.2159 4.8390 27 6 -0.2400 0.1845 4.7769 28 6 1.7596 -0.4535 6.1315 29 6 1.7702 1.6678 4.8110 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.6056 -1.7214 -1.2983 34 1 1.7610 -0.1588 -2.1391 35 1 2.7451 0.1378 -3.3846 36 1 5.2203 1.2539 -4.1618 37 1 5.1379 -0.4132 -4.7802 38 1 2.9931 0.1124 -5.9088 39 1 3.0761 1.7793 -5.2901 40 1 2.2287 2.1934 -8.8497 41 1 5.1902 -1.3231 -0.0151 42 1 3.8409 -2.4814 0.0868 43 1 3.9162 0.3396 1.2534 44 1 3.9346 -1.1886 2.1664 45 1 -0.5833 -0.8499 4.7968 46 1 -0.6496 0.7202 5.6334 47 1 -0.5761 0.6612 3.8560 48 1 2.8485 -0.4316 6.1759 49 1 1.3505 0.0820 6.9882 50 1 1.4160 -1.4878 6.1512 51 1 1.4340 2.1445 3.8902 52 1 1.3604 2.2032 5.6675 53 1 2.8591 1.6902 4.8552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602291805.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:55 Heat of formation + Delta-G solvation = -148.517043 kcal Electronic energy + Delta-G solvation = -30812.625747 eV Core-core repulsion = 26683.223306 eV Total energy + Delta-G solvation = -4129.402441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.21715 -41.29450 -39.20205 -37.74999 -36.63048 -35.19867 -34.87546 -34.39884 -33.23841 -31.27847 -28.37985 -28.28411 -28.20452 -27.35093 -26.41075 -23.78997 -23.51061 -22.67602 -21.65525 -20.72536 -20.48467 -19.15782 -18.53047 -18.22132 -17.50816 -17.27264 -16.96266 -16.65703 -16.49386 -15.82164 -15.52148 -15.43446 -15.38153 -15.22728 -15.04228 -14.52174 -14.46270 -14.26157 -14.04778 -13.67482 -13.30907 -13.24992 -13.19124 -13.09871 -12.99821 -12.93679 -12.90398 -12.87397 -12.67945 -12.52643 -12.40215 -12.23108 -12.07315 -11.95972 -11.77222 -11.66638 -11.61048 -11.44031 -11.33116 -11.12561 -10.74005 -10.59367 -10.16437 -9.48853 -8.23123 -6.33448 1.20840 1.42138 1.44827 1.52368 1.62313 1.71965 2.12603 2.41319 2.97865 3.11421 3.39549 3.60846 3.64368 3.75569 3.81160 3.88001 3.96810 4.11419 4.24276 4.28172 4.40407 4.51028 4.52281 4.57576 4.59915 4.60726 4.63635 4.72426 4.76773 4.79897 4.82563 4.85575 4.88214 4.88970 4.91122 5.07343 5.08231 5.14740 5.25979 5.28375 5.30476 5.30994 5.35746 5.49374 5.56146 5.59296 5.70284 5.79059 5.92601 6.17618 6.79122 6.85616 6.97057 7.35519 7.55242 8.88523 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.002002 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.142297 B =13980.943464 C =14520.348508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.058 0.942 4 C 0.115 3.885 5 N -0.629 5.629 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.736 5.736 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.129 3.871 20 C -0.115 4.115 21 C -0.071 4.071 22 H 0.138 0.862 23 C 0.470 3.530 24 O -0.515 6.515 25 O -0.352 6.352 26 C 0.107 3.893 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.403 0.597 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.086 0.914 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -8.594 30.136 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.008 4.008 5 N -0.366 5.366 6 C 0.402 3.598 7 O -0.519 6.519 8 N -0.393 5.393 9 C 0.035 3.965 10 C -0.012 4.012 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.195 1.195 19 C 0.007 3.993 20 C -0.153 4.153 21 C -0.090 4.090 22 H 0.155 0.845 23 C 0.314 3.686 24 O -0.404 6.404 25 O -0.269 6.269 26 C 0.072 3.928 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.105 0.895 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.130 -8.267 30.091 32.010 hybrid contribution -0.113 0.888 -1.053 1.382 sum -7.243 -7.379 29.039 30.824 Atomic orbital electron populations 1.22010 0.92696 1.03145 1.03456 1.21275 0.97409 0.98931 0.92539 0.92370 1.21907 0.78438 1.02471 0.97989 1.47426 1.06680 1.64360 1.18128 1.16077 0.84911 0.78067 0.80791 1.90840 1.14209 1.64343 1.82479 1.45437 1.10786 1.69702 1.13326 1.21086 0.93058 0.97890 0.84429 1.19112 0.94831 0.95520 0.91784 1.21428 0.93757 1.44273 0.99061 0.92266 1.25879 0.96401 0.95295 1.01645 1.70053 1.10724 1.47120 1.28608 0.85492 0.78488 0.78942 0.78081 1.19259 1.20570 1.19453 1.21641 0.99021 0.97404 0.81240 1.21858 0.92285 1.01649 0.99547 1.21180 0.97014 1.02290 0.88482 0.84455 1.23776 0.77286 0.82271 0.85242 1.90533 1.35737 1.26956 1.87205 1.86547 1.68853 1.56626 1.14887 1.22436 0.94044 0.91927 0.84426 1.22452 0.93803 1.03184 1.04180 1.21866 1.02576 1.01677 0.93254 1.22462 1.01771 0.95564 1.04040 0.90891 0.90974 0.92262 0.88025 0.90158 0.75877 0.94091 0.93582 0.97182 0.97597 0.92550 0.90301 0.88298 0.92999 0.87087 0.91443 0.89619 0.91892 0.91385 0.88704 0.90933 0.92200 0.89489 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.86 71.98 0.64 -1.93 16 2 C -0.08 -1.49 2.06 -10.72 -0.02 -1.51 16 3 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 4 C 0.11 2.18 5.66 86.36 0.49 2.67 16 5 N -0.63 -15.97 2.98 -836.18 -2.50 -18.47 16 6 C 0.70 25.23 8.30 179.05 1.49 26.71 16 7 O -0.64 -28.04 15.79 -3.98 -0.06 -28.11 16 8 N -0.74 -27.19 5.47 -478.52 -2.62 -29.81 16 9 C 0.16 7.15 5.62 86.38 0.49 7.64 16 10 C 0.03 1.29 5.09 29.85 0.15 1.44 16 11 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.01 0.37 5.46 84.66 0.46 0.84 16 14 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 15 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.13 2.55 6.45 86.31 0.56 3.11 16 20 C -0.11 -1.86 5.30 30.67 0.16 -1.70 16 21 C -0.07 -1.07 2.14 -11.51 -0.02 -1.09 16 22 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 23 C 0.47 8.53 6.27 71.24 0.45 8.98 16 24 O -0.52 -11.60 9.08 21.98 0.20 -11.40 16 25 O -0.35 -5.74 9.76 -51.38 -0.50 -6.24 16 26 C 0.11 1.47 1.13 -10.80 -0.01 1.46 16 27 C -0.18 -2.35 8.37 71.98 0.60 -1.74 16 28 C -0.14 -1.16 8.85 71.98 0.64 -0.52 16 29 C -0.18 -2.72 8.37 71.98 0.60 -2.11 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.43 5.41 -2.39 -0.01 1.42 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.66 5.64 -2.38 -0.01 1.64 16 35 H 0.40 12.98 5.96 -92.71 -0.55 12.42 16 36 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.08 1.94 7.01 -2.39 -0.02 1.93 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.12 5.89 -2.38 -0.01 1.11 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 1.21 5.89 -2.38 -0.01 1.20 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.42 410.75 4.07 -68.35 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.33 Total: 22.44 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.89 Total: 11.51 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.83 Total: -102.59 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.36 Total: -45.75 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.42 4.07 -68.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291805.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.165 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds