Wall clock time and date at job start Tue Mar 31 2020 23:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46485 * 2 1 4 4 O 1.45197 * 109.47169 * 240.00059 * 2 1 3 5 5 C 1.34227 * 117.00195 * 89.99747 * 4 2 1 6 6 O 1.20830 * 119.99936 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00162 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.46745 * 67.59869 * 7 5 4 9 9 C 1.52998 * 109.47299 * 307.59959 * 7 5 4 10 10 N 1.46903 * 109.47421 * 187.59340 * 7 5 4 11 11 C 1.48567 * 110.99452 * 78.82393 * 10 7 5 12 12 H 1.09000 * 110.40581 * 40.26724 * 11 10 7 13 13 C 1.52998 * 110.41420 * 277.82321 * 11 10 7 14 14 C 1.54374 * 104.59035 * 159.04015 * 11 10 7 15 15 C 1.54257 * 105.06705 * 336.15078 * 14 11 10 16 16 C 1.48558 * 111.00254 * 194.24477 * 10 7 5 17 17 H 1.08995 * 110.40761 * 319.74123 * 16 10 7 18 18 C 1.52997 * 110.40865 * 82.18632 * 16 10 7 19 19 C 1.50699 * 109.47225 * 119.99522 * 2 1 3 20 20 O 1.21281 * 119.99805 * 106.61645 * 19 2 1 21 21 N 1.34777 * 120.00334 * 286.61563 * 19 2 1 22 22 C 1.46498 * 119.99612 * 4.38581 * 21 19 2 23 23 C 1.46491 * 119.99941 * 184.65897 * 21 19 2 24 24 C 1.50704 * 109.47140 * 269.72402 * 23 21 19 25 25 H 1.07998 * 120.00135 * 0.02562 * 24 23 21 26 26 C 1.37878 * 120.00127 * 179.97438 * 24 23 21 27 27 N 1.31520 * 119.99764 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99991 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.46808 * 60.00669 * 28 26 24 30 30 H 1.48506 * 109.46917 * 180.02562 * 28 26 24 31 31 H 1.48493 * 109.47430 * 300.00327 * 28 26 24 32 32 H 1.09001 * 109.47480 * 49.50934 * 1 2 3 33 33 H 1.09005 * 109.47035 * 169.50927 * 1 2 3 34 34 H 1.08999 * 109.47322 * 289.50404 * 1 2 3 35 35 H 1.08997 * 109.47034 * 307.65087 * 9 7 5 36 36 H 1.08996 * 109.47091 * 67.64835 * 9 7 5 37 37 H 1.08995 * 109.46942 * 187.64957 * 9 7 5 38 38 H 1.08994 * 109.47537 * 69.51615 * 13 11 10 39 39 H 1.08998 * 109.46445 * 189.51999 * 13 11 10 40 40 H 1.08996 * 109.46821 * 309.51369 * 13 11 10 41 41 H 1.09005 * 110.32383 * 95.04660 * 14 11 10 42 42 H 1.09001 * 110.32667 * 217.15066 * 14 11 10 43 43 H 1.09003 * 110.32628 * 118.89124 * 15 14 11 44 44 H 1.09003 * 110.32557 * 241.00465 * 15 14 11 45 45 H 1.08998 * 109.47329 * 64.55214 * 18 16 10 46 46 H 1.09006 * 109.46876 * 184.55742 * 18 16 10 47 47 H 1.09000 * 109.47171 * 304.54904 * 18 16 10 48 48 H 1.08998 * 109.46877 * 269.71606 * 22 21 19 49 49 H 1.08996 * 109.47760 * 29.71920 * 22 21 19 50 50 H 1.09003 * 109.47032 * 149.72651 * 22 21 19 51 51 H 1.09005 * 109.47574 * 29.72503 * 23 21 19 52 52 H 1.09004 * 109.47382 * 149.72874 * 23 21 19 53 53 H 0.97004 * 119.99659 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2811 6 8 1.9973 1.2517 -2.2506 7 6 2.7193 -0.5770 -3.5491 8 1 1.9517 -1.2386 -3.9504 9 6 3.9822 -1.3859 -3.2462 10 7 3.0308 0.4663 -4.5353 11 6 4.3434 1.0986 -4.2447 12 1 5.0668 0.3458 -3.9314 13 6 4.1907 2.1746 -3.1678 14 6 4.7738 1.7343 -5.5840 15 6 4.0206 0.9354 -6.6675 16 6 3.1983 -0.1160 -5.8917 17 1 3.7426 -1.0587 -5.8359 18 6 1.8355 -0.3235 -6.5553 19 6 2.0324 -0.7103 1.2305 20 8 2.5177 -1.8177 1.1357 21 7 1.9424 -0.1149 2.4363 22 6 1.2701 1.1803 2.5653 23 6 2.5221 -0.7601 3.6168 24 6 1.4882 -1.6453 4.2641 25 1 0.4985 -1.7201 3.8383 26 6 1.8062 -2.3605 5.3992 27 7 3.0116 -2.2698 5.9173 28 14 0.5245 -3.4570 6.2018 29 1 0.0859 -4.4952 5.2349 30 1 1.1122 -4.1112 7.3985 31 1 -0.6434 -2.6361 6.6105 32 1 -0.3634 0.6673 -0.7815 33 1 -0.3633 -1.0105 -0.1871 34 1 -0.3634 0.3431 0.9687 35 1 4.7000 -0.7557 -2.7211 36 1 3.7247 -2.2413 -2.6218 37 1 4.4216 -1.7367 -4.1800 38 1 3.9685 1.7023 -2.2111 39 1 5.1183 2.7413 -3.0866 40 1 3.3768 2.8469 -3.4389 41 1 4.4817 2.7840 -5.6160 42 1 5.8509 1.6375 -5.7203 43 1 3.3587 1.5929 -7.2312 44 1 4.7277 0.4462 -7.3374 45 1 1.3581 0.6433 -6.7149 46 1 1.9707 -0.8247 -7.5138 47 1 1.2068 -0.9371 -5.9101 48 1 1.9967 1.9816 2.4317 49 1 0.4933 1.2638 1.8052 50 1 0.8201 1.2591 3.5549 51 1 3.3799 -1.3624 3.3174 52 1 2.8433 0.0022 4.3267 53 1 3.2355 -2.7733 6.7157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741023561.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:21 Heat of formation + Delta-G solvation = -119.036703 kcal Electronic energy + Delta-G solvation = -31687.878993 eV Core-core repulsion = 27559.754916 eV Total energy + Delta-G solvation = -4128.124077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16767 -40.97776 -40.04380 -37.52640 -36.69926 -35.00434 -34.75968 -33.57936 -32.96713 -29.98807 -29.62023 -28.96988 -27.70781 -26.51331 -25.72833 -24.73787 -24.20674 -22.28554 -21.30075 -20.46239 -20.27905 -18.70963 -18.68508 -18.31729 -17.73995 -17.37515 -17.15348 -16.55577 -16.27820 -16.02221 -15.82633 -15.63792 -15.21214 -14.77903 -14.52886 -14.33140 -14.25071 -14.02754 -13.88369 -13.71652 -13.62200 -13.52460 -13.35670 -13.34032 -13.08945 -13.03756 -12.80546 -12.75501 -12.60063 -12.53699 -12.37375 -12.33534 -12.18680 -12.11881 -11.95327 -11.73757 -11.61280 -11.46214 -11.32351 -11.14164 -10.65222 -10.60691 -9.53793 -9.49384 -8.23802 -6.38336 1.10202 1.26201 1.36860 1.41308 1.48231 1.60360 2.28469 2.41846 2.87437 3.06200 3.38219 3.47105 3.56376 3.72539 3.80606 3.85199 3.87936 4.00753 4.10719 4.16503 4.20261 4.38376 4.39332 4.51568 4.57035 4.57813 4.60899 4.63528 4.69789 4.74205 4.81614 4.84236 4.88717 4.91997 4.93151 5.05725 5.10506 5.10730 5.12712 5.16587 5.27223 5.29900 5.32302 5.40489 5.46519 5.51194 5.76771 5.88727 5.95025 6.02416 6.54667 6.69893 6.74219 7.19303 7.35137 8.83604 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002412 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.316083 B =11608.060533 C =11724.166144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 H 0.115 0.885 4 O -0.345 6.345 5 C 0.459 3.541 6 O -0.494 6.494 7 C 0.087 3.913 8 H 0.133 0.867 9 C -0.177 4.177 10 N -0.495 5.495 11 C 0.042 3.958 12 H 0.067 0.933 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.114 4.114 16 C 0.054 3.946 17 H 0.068 0.932 18 C -0.135 4.135 19 C 0.500 3.500 20 O -0.575 6.575 21 N -0.601 5.601 22 C 0.061 3.939 23 C 0.260 3.740 24 C -0.543 4.543 25 H 0.055 0.945 26 C 0.008 3.992 27 N -0.929 5.929 28 Si 0.968 3.032 29 H -0.278 1.278 30 H -0.278 1.278 31 H -0.259 1.259 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.078 0.922 51 H -0.002 1.002 52 H 0.031 0.969 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 9.040 -26.376 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.133 0.867 4 O -0.261 6.261 5 C 0.301 3.699 6 O -0.380 6.380 7 C -0.023 4.023 8 H 0.151 0.849 9 C -0.236 4.236 10 N -0.221 5.221 11 C -0.065 4.065 12 H 0.085 0.915 13 C -0.183 4.183 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.053 4.053 17 H 0.086 0.914 18 C -0.193 4.193 19 C 0.286 3.714 20 O -0.455 6.455 21 N -0.333 5.333 22 C -0.081 4.081 23 C 0.139 3.861 24 C -0.581 4.581 25 H 0.074 0.926 26 C -0.192 4.192 27 N -0.568 5.568 28 Si 0.792 3.208 29 H -0.203 1.203 30 H -0.204 1.204 31 H -0.183 1.183 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.016 0.984 52 H 0.049 0.951 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.966 9.186 -26.185 27.766 hybrid contribution 0.287 -1.170 1.252 1.738 sum -0.679 8.016 -24.932 26.198 Atomic orbital electron populations 1.22301 0.90032 1.04321 1.05394 1.22438 0.97369 0.96675 0.81010 0.86724 1.86636 1.77128 1.42425 1.19951 1.24086 0.74630 0.85992 0.85211 1.90628 1.46852 1.16626 1.83930 1.21348 0.99962 0.93086 0.87873 0.84911 1.22338 0.96822 1.00569 1.03833 1.65291 1.30680 1.24896 1.01191 1.22941 0.90027 0.96613 0.96969 0.91545 1.21745 1.01072 0.98363 0.97121 1.22318 1.00564 1.00030 0.92433 1.22351 0.98643 0.96962 0.97194 1.22827 0.97704 0.97467 0.87301 0.91414 1.21744 0.95068 1.02055 1.00421 1.20674 0.79530 0.86058 0.85091 1.90660 1.46911 1.21311 1.86598 1.48064 1.55865 1.22134 1.07259 1.22296 0.98071 0.82974 1.04741 1.18844 0.93182 0.92362 0.81669 1.21643 0.98588 1.27353 1.10539 0.92628 1.25870 0.97757 0.98013 0.97515 1.70046 1.21085 1.42983 1.22699 0.85457 0.79043 0.78717 0.77545 1.20338 1.20354 1.18328 0.88810 0.91402 0.88199 0.92446 0.91181 0.88659 0.95180 0.92042 0.92473 0.91223 0.89979 0.90590 0.89432 0.92494 0.90332 0.93089 0.91057 0.88386 0.90312 0.98379 0.95146 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.11 71.98 0.66 -3.68 16 2 C 0.08 2.77 2.18 29.85 0.06 2.84 16 3 H 0.12 3.48 6.75 -2.39 -0.02 3.46 16 4 O -0.35 -11.62 9.23 -45.14 -0.42 -12.03 16 5 C 0.46 13.02 6.29 71.24 0.45 13.47 16 6 O -0.49 -15.03 12.15 21.95 0.27 -14.76 16 7 C 0.09 1.87 2.77 44.17 0.12 1.99 16 8 H 0.13 2.42 7.05 -2.39 -0.02 2.41 16 9 C -0.18 -3.58 7.69 71.98 0.55 -3.02 16 10 N -0.49 -9.52 4.39 -811.59 -3.56 -13.08 16 11 C 0.04 0.79 2.47 45.06 0.11 0.90 16 12 H 0.07 1.23 5.27 -2.39 -0.01 1.21 16 13 C -0.13 -2.86 7.69 71.98 0.55 -2.31 16 14 C -0.12 -1.57 6.55 31.49 0.21 -1.36 16 15 C -0.11 -1.26 6.55 31.49 0.21 -1.05 16 16 C 0.05 0.72 2.73 45.06 0.12 0.85 16 17 H 0.07 0.79 6.45 -2.39 -0.02 0.78 16 18 C -0.14 -1.62 9.44 71.98 0.68 -0.95 16 19 C 0.50 22.07 7.00 87.66 0.61 22.69 16 20 O -0.58 -31.45 16.18 15.39 0.25 -31.20 16 21 N -0.60 -26.17 2.86 -851.14 -2.43 -28.60 16 22 C 0.06 1.86 9.83 127.77 1.26 3.11 16 23 C 0.26 14.20 5.13 85.64 0.44 14.64 16 24 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 25 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 26 C 0.01 0.43 5.46 84.65 0.46 0.90 16 27 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 28 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 29 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 30 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 31 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.10 2.43 5.46 -2.39 -0.01 2.42 16 35 H 0.06 1.29 6.49 -2.39 -0.02 1.28 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.40 6.55 -2.39 -0.02 1.38 16 38 H 0.03 0.83 5.70 -2.39 -0.01 0.81 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.44 7.80 -2.39 -0.02 1.42 16 41 H 0.07 1.01 7.86 -2.38 -0.02 0.99 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.83 7.75 -2.39 -0.02 0.81 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.78 7.98 -2.39 -0.02 0.76 16 46 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.05 0.66 7.19 -2.39 -0.02 0.65 16 48 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.10 2.37 4.22 -2.39 -0.01 2.36 16 50 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 51 H 0.00 -0.12 7.48 -2.38 -0.02 -0.14 16 52 H 0.03 1.66 8.07 -2.38 -0.02 1.65 16 53 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -76.41 406.64 4.05 -72.37 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.89 Total: 18.51 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 6.74 Total: 17.87 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -5.71 Total: -97.71 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: 0.10 Total: -57.99 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.41 4.05 -72.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741023561.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.670 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds