Wall clock time and date at job start Tue Mar 31 2020 23:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46995 * 2 1 4 4 C 1.50704 * 109.47186 * 240.00035 * 2 1 3 5 5 O 1.20818 * 120.00298 * 236.11911 * 4 2 1 6 6 O 1.34231 * 119.99855 * 56.12567 * 4 2 1 7 7 C 1.45199 * 117.00055 * 179.97438 * 6 4 2 8 8 H 1.08995 * 109.47314 * 330.00165 * 7 6 4 9 9 C 1.53009 * 109.46991 * 89.99664 * 7 6 4 10 10 C 1.50696 * 109.47252 * 209.99642 * 7 6 4 11 11 O 1.21276 * 119.99968 * 0.02562 * 10 7 6 12 12 N 1.34781 * 120.00034 * 179.97438 * 10 7 6 13 13 C 1.46499 * 119.99793 * 0.02562 * 12 10 7 14 14 C 1.46501 * 119.99952 * 179.97438 * 12 10 7 15 15 C 1.50701 * 109.46894 * 90.00231 * 14 12 10 16 16 H 1.08005 * 119.99975 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99768 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46795 * 59.99563 * 19 17 15 21 21 H 1.48503 * 109.47034 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46912 * 299.99434 * 19 17 15 23 23 N 1.46901 * 109.47081 * 120.00098 * 2 1 3 24 24 C 1.48554 * 110.99892 * 284.42588 * 23 2 1 25 25 H 1.09003 * 110.41268 * 40.26933 * 24 23 2 26 26 C 1.53001 * 110.51447 * 277.87066 * 24 23 2 27 27 C 1.54379 * 104.59356 * 159.04120 * 24 23 2 28 28 C 1.54265 * 105.06204 * 336.15033 * 27 24 23 29 29 C 1.48554 * 110.99989 * 39.85351 * 23 2 1 30 30 H 1.09001 * 110.50991 * 319.78453 * 29 23 2 31 31 C 1.52998 * 110.41788 * 82.17967 * 29 23 2 32 32 H 1.09001 * 109.47246 * 171.66277 * 1 2 3 33 33 H 1.08997 * 109.47498 * 291.66019 * 1 2 3 34 34 H 1.09000 * 109.47009 * 51.66328 * 1 2 3 35 35 H 1.08996 * 109.46841 * 180.02562 * 9 7 6 36 36 H 1.08993 * 109.46907 * 300.00003 * 9 7 6 37 37 H 1.08995 * 109.46683 * 60.00115 * 9 7 6 38 38 H 1.08998 * 109.46793 * 90.00153 * 13 12 10 39 39 H 1.08999 * 109.47026 * 209.99988 * 13 12 10 40 40 H 1.08995 * 109.47522 * 329.99912 * 13 12 10 41 41 H 1.08993 * 109.46844 * 209.99798 * 14 12 10 42 42 H 1.08994 * 109.46993 * 330.00216 * 14 12 10 43 43 H 0.97000 * 120.00068 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.47002 * 301.71888 * 26 24 23 45 45 H 1.09000 * 109.47099 * 61.71985 * 26 24 23 46 46 H 1.09002 * 109.47099 * 181.71877 * 26 24 23 47 47 H 1.09005 * 110.32677 * 95.04414 * 27 24 23 48 48 H 1.08999 * 110.32549 * 217.25239 * 27 24 23 49 49 H 1.08995 * 110.32429 * 118.89282 * 28 27 24 50 50 H 1.09001 * 110.32258 * 241.10539 * 28 27 24 51 51 H 1.09001 * 109.47102 * 167.28729 * 31 29 23 52 52 H 1.09004 * 109.46707 * 287.28554 * 31 29 23 53 53 H 1.08999 * 109.46925 * 47.27939 * 31 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7836 -1.6502 -1.1211 6 8 1.6452 -0.2989 -2.4481 7 6 2.1689 -1.0296 -3.5883 8 1 3.1536 -1.4276 -3.3436 9 6 1.2240 -2.1828 -3.9327 10 6 2.2814 -0.1022 -4.7707 11 8 1.9531 1.0603 -4.6629 12 7 2.7480 -0.5643 -5.9477 13 6 3.1451 -1.9685 -6.0777 14 6 2.8569 0.3372 -7.0973 15 6 4.2173 0.9854 -7.1002 16 1 4.9295 0.7497 -6.3232 17 6 4.5525 1.8801 -8.0943 18 7 3.6852 2.1674 -9.0402 19 14 6.2387 2.6841 -8.0975 20 1 7.2866 1.6360 -8.1897 21 1 6.3492 3.5979 -9.2629 22 1 6.4208 3.4572 -6.8428 23 7 2.0196 -0.6925 1.1994 24 6 1.8713 0.1621 2.4054 25 1 0.9223 0.6975 2.3776 26 6 3.0363 1.1484 2.5102 27 6 1.8961 -0.8282 3.5894 28 6 1.4500 -2.1787 2.9919 29 6 1.1933 -1.8906 1.4971 30 1 0.1378 -1.6785 1.3267 31 6 1.6433 -3.0756 0.6403 32 1 -0.3634 -1.0168 -0.1490 33 1 -0.3634 0.3793 0.9550 34 1 -0.3633 0.6374 -0.8061 35 1 1.6174 -2.7315 -4.7884 36 1 1.1426 -2.8535 -3.0775 37 1 0.2392 -1.7848 -4.1774 38 1 2.2865 -2.5611 -6.3933 39 1 3.9386 -2.0544 -6.8200 40 1 3.5057 -2.3346 -5.1165 41 1 2.7229 -0.2305 -8.0181 42 1 2.0879 1.1067 -7.0297 43 1 3.9212 2.7966 -9.7397 44 1 3.9761 0.5977 2.5496 45 1 3.0360 1.8049 1.6401 46 1 2.9267 1.7453 3.4157 47 1 2.9047 -0.9084 3.9949 48 1 1.1998 -0.5088 4.3648 49 1 2.2397 -2.9216 3.1040 50 1 0.5347 -2.5221 3.4740 51 1 1.1918 -3.9917 1.0214 52 1 1.3295 -2.9178 -0.3916 53 1 2.7292 -3.1615 0.6807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741023563.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:28 Heat of formation + Delta-G solvation = -120.767115 kcal Electronic energy + Delta-G solvation = -31677.771594 eV Core-core repulsion = 27549.572480 eV Total energy + Delta-G solvation = -4128.199114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.15683 -40.98343 -40.04204 -37.51269 -36.73940 -35.02341 -34.76901 -33.57377 -32.92553 -29.97896 -29.54942 -28.98612 -27.76047 -26.44108 -25.76865 -24.73071 -24.18785 -22.26931 -21.32005 -20.46370 -20.23452 -18.84439 -18.63185 -18.31798 -17.54783 -17.43712 -17.15425 -16.64414 -16.48561 -15.89434 -15.68499 -15.58434 -15.13548 -14.76626 -14.60506 -14.31677 -14.22864 -14.18955 -13.84403 -13.71526 -13.54724 -13.45955 -13.40332 -13.30964 -13.01233 -12.97059 -12.82127 -12.77608 -12.61196 -12.53386 -12.42315 -12.32258 -12.20914 -12.10939 -11.91088 -11.75430 -11.64769 -11.46370 -11.30379 -11.10965 -10.66492 -10.62715 -9.53728 -9.47205 -8.25372 -6.40078 1.12837 1.25766 1.35255 1.39332 1.46560 1.60806 2.28286 2.41133 2.89393 3.04493 3.39030 3.47126 3.56378 3.74165 3.82472 3.86388 3.88450 4.02638 4.10654 4.18279 4.29944 4.39201 4.40847 4.50638 4.58133 4.60386 4.60765 4.66896 4.70236 4.75360 4.84038 4.85120 4.88358 4.92168 4.93872 5.06219 5.07631 5.11621 5.12136 5.17760 5.27490 5.30905 5.33788 5.38686 5.48942 5.52887 5.76434 5.91504 5.97681 6.01687 6.54719 6.68238 6.74856 7.18843 7.34180 8.81777 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002599 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.398775 B =10771.315292 C =11550.724938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.118 0.882 4 C 0.459 3.541 5 O -0.496 6.496 6 O -0.346 6.346 7 C 0.082 3.918 8 H 0.110 0.890 9 C -0.164 4.164 10 C 0.500 3.500 11 O -0.579 6.579 12 N -0.600 5.600 13 C 0.068 3.932 14 C 0.261 3.739 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.966 3.034 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.280 1.280 23 N -0.502 5.502 24 C 0.056 3.944 25 H 0.070 0.930 26 C -0.139 4.139 27 C -0.114 4.114 28 C -0.115 4.115 29 C 0.044 3.956 30 H 0.075 0.925 31 C -0.124 4.124 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.001 0.999 43 H 0.269 0.731 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.065 0.935 52 H 0.037 0.963 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -11.978 25.191 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.026 4.026 3 H 0.136 0.864 4 C 0.301 3.699 5 O -0.383 6.383 6 O -0.261 6.261 7 C 0.023 3.977 8 H 0.127 0.873 9 C -0.221 4.221 10 C 0.287 3.713 11 O -0.459 6.459 12 N -0.332 5.332 13 C -0.073 4.073 14 C 0.140 3.860 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.205 1.205 23 N -0.227 5.227 24 C -0.051 4.051 25 H 0.088 0.912 26 C -0.196 4.196 27 C -0.152 4.152 28 C -0.153 4.153 29 C -0.063 4.063 30 H 0.093 0.907 31 C -0.182 4.182 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.105 0.895 51 H 0.084 0.916 52 H 0.056 0.944 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.822 -11.726 24.940 28.391 hybrid contribution 0.279 0.987 -0.707 1.245 sum -6.543 -10.739 24.233 27.302 Atomic orbital electron populations 1.22323 0.92466 1.03692 1.04672 1.21327 0.96335 0.98302 0.86598 0.86444 1.24093 0.78539 0.82507 0.84750 1.90629 1.33386 1.27571 1.86683 1.86609 1.66720 1.58026 1.14793 1.22432 1.01346 0.91406 0.82472 0.87275 1.22379 0.99194 0.95556 1.04965 1.20682 0.77869 0.88123 0.84649 1.90656 1.51182 1.20162 1.83923 1.48045 1.61939 1.12505 1.10699 1.22230 1.01614 0.79658 1.03819 1.18839 0.95710 0.88509 0.82969 1.21657 1.00197 1.26271 1.10555 0.93119 1.25821 1.01597 0.96640 0.94817 1.70026 1.36813 1.35326 1.14301 0.85500 0.79369 0.78622 0.77531 1.18460 1.20033 1.20527 1.65250 1.50836 1.05875 1.00782 1.22791 0.98851 0.94355 0.89144 0.91205 1.21761 0.97734 0.98152 1.01989 1.22342 1.02698 0.93722 0.96449 1.22332 1.02226 0.97842 0.92943 1.22964 0.96380 0.90642 0.96346 0.90736 1.21733 1.01459 0.96629 0.98333 0.91100 0.88832 0.90886 0.87128 0.89637 0.91345 0.89552 0.90692 0.89508 0.94796 0.98099 0.92246 0.92888 0.93664 0.90161 0.91039 0.89229 0.91453 0.89503 0.91633 0.94440 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 7.69 71.98 0.55 -2.43 16 2 C 0.08 1.89 2.76 44.17 0.12 2.01 16 3 H 0.12 2.63 7.10 -2.39 -0.02 2.61 16 4 C 0.46 13.49 6.41 71.24 0.46 13.95 16 5 O -0.50 -15.70 11.94 21.99 0.26 -15.44 16 6 O -0.35 -11.81 9.27 -45.08 -0.42 -12.23 16 7 C 0.08 2.73 2.18 29.85 0.07 2.80 16 8 H 0.11 3.54 6.41 -2.39 -0.02 3.52 16 9 C -0.16 -3.99 9.18 71.99 0.66 -3.33 16 10 C 0.50 22.22 7.15 87.66 0.63 22.84 16 11 O -0.58 -31.98 16.08 15.78 0.25 -31.73 16 12 N -0.60 -25.97 2.86 -851.16 -2.43 -28.40 16 13 C 0.07 2.03 8.80 127.77 1.12 3.16 16 14 C 0.26 14.17 5.16 85.63 0.44 14.61 16 15 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 16 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 17 C 0.01 0.62 5.46 84.65 0.46 1.09 16 18 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 19 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 N -0.50 -10.02 4.39 -811.61 -3.56 -13.59 16 24 C 0.06 0.82 2.72 45.06 0.12 0.94 16 25 H 0.07 0.86 6.54 -2.39 -0.02 0.84 16 26 C -0.14 -2.12 9.34 71.98 0.67 -1.45 16 27 C -0.11 -1.31 6.55 31.49 0.21 -1.10 16 28 C -0.12 -1.45 6.55 31.49 0.21 -1.24 16 29 C 0.04 0.74 2.43 45.06 0.11 0.85 16 30 H 0.07 1.10 5.26 -2.39 -0.01 1.09 16 31 C -0.12 -2.50 7.63 71.98 0.55 -1.95 16 32 H 0.07 1.18 6.56 -2.39 -0.02 1.17 16 33 H 0.09 1.16 6.59 -2.39 -0.02 1.15 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 2.24 4.53 -2.39 -0.01 2.23 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.99 6.95 -2.39 -0.02 1.98 16 39 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 40 H 0.09 2.11 6.01 -2.39 -0.01 2.10 16 41 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 42 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 45 H 0.04 0.78 7.30 -2.39 -0.02 0.76 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.87 7.85 -2.38 -0.02 0.85 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.94 7.86 -2.39 -0.02 0.92 16 50 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.04 0.86 6.02 -2.38 -0.01 0.85 16 53 H 0.05 1.23 7.62 -2.39 -0.02 1.21 16 Total: -1.00 -77.86 405.49 3.93 -73.93 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.89 Total: 16.89 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.62 Total: 18.90 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.71 Total: -97.78 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: 0.10 Total: -59.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.86 3.93 -73.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741023563.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.837 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds