Wall clock time and date at job start Tue Mar 31 2020 23:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47145 * 2 1 4 4 O 1.45196 * 109.46853 * 239.99787 * 2 1 3 5 5 C 1.34233 * 116.99509 * 90.00407 * 4 2 1 6 6 O 1.20821 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99497 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.47709 * 85.02011 * 7 5 4 9 9 C 1.53005 * 109.47018 * 325.01337 * 7 5 4 10 10 N 1.46909 * 109.46831 * 205.02081 * 7 5 4 11 11 C 1.47444 * 110.99718 * 199.97914 * 10 7 5 12 12 H 1.09003 * 109.88676 * 242.65721 * 11 10 7 13 13 C 1.53001 * 109.88878 * 3.85118 * 11 10 7 14 14 C 1.54320 * 107.23145 * 123.25393 * 11 10 7 15 15 C 1.55139 * 103.01911 * 22.28505 * 14 11 10 16 16 C 1.47840 * 110.99673 * 320.81813 * 10 7 5 17 17 H 1.09002 * 110.37677 * 332.57915 * 16 10 7 18 18 C 1.53004 * 110.37270 * 94.80896 * 16 10 7 19 19 C 1.50700 * 109.47056 * 120.00094 * 2 1 3 20 20 O 1.21280 * 120.00213 * 120.00084 * 19 2 1 21 21 N 1.34779 * 119.99686 * 299.72488 * 19 2 1 22 22 C 1.46496 * 120.00448 * 0.27809 * 21 19 2 23 23 C 1.46506 * 119.99636 * 180.27452 * 21 19 2 24 24 C 1.50701 * 109.46999 * 90.00257 * 23 21 19 25 25 H 1.08003 * 119.99940 * 359.97438 * 24 23 21 26 26 C 1.37872 * 120.00173 * 180.02562 * 24 23 21 27 27 N 1.31518 * 120.00076 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00061 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47351 * 59.99462 * 28 26 24 30 30 H 1.48506 * 109.46723 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.46915 * 299.99384 * 28 26 24 32 32 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47423 * 300.00018 * 1 2 3 34 34 H 1.08997 * 109.47213 * 59.99795 * 1 2 3 35 35 H 1.09003 * 109.47114 * 191.40950 * 9 7 5 36 36 H 1.08991 * 109.47415 * 311.41083 * 9 7 5 37 37 H 1.09000 * 109.46900 * 71.41381 * 9 7 5 38 38 H 1.08994 * 109.47085 * 94.38451 * 13 11 10 39 39 H 1.09008 * 109.46514 * 214.38247 * 13 11 10 40 40 H 1.08998 * 109.46946 * 334.37781 * 13 11 10 41 41 H 1.09003 * 110.70600 * 263.90062 * 14 11 10 42 42 H 1.09000 * 110.70611 * 140.66431 * 14 11 10 43 43 H 1.09007 * 110.98821 * 206.25521 * 15 14 11 44 44 H 1.08997 * 111.02547 * 82.44958 * 15 14 11 45 45 H 1.09000 * 109.47198 * 92.35074 * 18 16 10 46 46 H 1.08999 * 109.47363 * 212.34589 * 18 16 10 47 47 H 1.09000 * 109.46864 * 332.35050 * 18 16 10 48 48 H 1.08997 * 109.47356 * 89.99638 * 22 21 19 49 49 H 1.09005 * 109.47289 * 210.00174 * 22 21 19 50 50 H 1.09004 * 109.46722 * 329.99629 * 22 21 19 51 51 H 1.08995 * 109.47027 * 209.99850 * 23 21 19 52 52 H 1.08996 * 109.47207 * 330.00115 * 23 21 19 53 53 H 0.97001 * 120.00337 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0641 -2.2811 6 8 1.9974 1.2517 -2.2505 7 6 2.7193 -0.5771 -3.5491 8 1 1.8769 -0.9819 -4.1099 9 6 3.6897 -1.7071 -3.1996 10 7 3.4126 0.4288 -4.3650 11 6 3.4981 -0.0005 -5.7730 12 1 4.5424 -0.1187 -6.0619 13 6 2.7501 -1.3219 -5.9605 14 6 2.8384 1.1020 -6.6279 15 6 2.9250 2.3522 -5.7134 16 6 2.7116 1.7294 -4.3112 17 1 1.6493 1.5802 -4.1180 18 6 3.3279 2.6223 -3.2324 19 6 2.0324 -0.7104 1.2304 20 8 2.7297 -1.6965 1.1192 21 7 1.7113 -0.2467 2.4545 22 6 0.8690 0.9444 2.5890 23 6 2.2046 -0.9339 3.6507 24 6 3.5335 -0.3486 4.0541 25 1 3.9674 0.4545 3.4769 26 6 4.1958 -0.8392 5.1593 27 7 3.6678 -1.8175 5.8619 28 14 5.8427 -0.1132 5.6598 29 1 5.6775 1.3331 5.9531 30 1 6.3428 -0.8099 6.8722 31 1 6.8167 -0.2856 4.5521 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8899 35 1 4.2053 -2.0355 -4.1021 36 1 4.4198 -1.3479 -2.4745 37 1 3.1354 -2.5432 -2.7733 38 1 1.7314 -1.1191 -6.2910 39 1 3.2618 -1.9258 -6.7100 40 1 2.7244 -1.8623 -5.0143 41 1 1.7992 0.8529 -6.8430 42 1 3.3968 1.2601 -7.5506 43 1 2.1336 3.0638 -5.9491 44 1 3.9052 2.8230 -5.7865 45 1 4.1027 3.2471 -3.6768 46 1 2.5540 3.2563 -2.7996 47 1 3.7661 1.9999 -2.4522 48 1 -0.1786 0.6461 2.6272 49 1 1.1302 1.4724 3.5061 50 1 1.0290 1.6008 1.7337 51 1 1.4898 -0.8065 4.4636 52 1 2.3254 -1.9956 3.4360 53 1 4.1336 -2.1624 6.6397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741023564.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:32 Heat of formation + Delta-G solvation = -79.082690 kcal Electronic energy + Delta-G solvation = -32043.136273 eV Core-core repulsion = 27916.744732 eV Total energy + Delta-G solvation = -4126.391541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.48395 -41.08866 -39.97641 -37.68424 -36.73525 -35.43298 -34.88841 -33.18765 -32.87377 -30.00863 -29.53702 -29.16395 -27.75089 -26.24220 -25.58925 -24.87399 -24.03771 -22.23841 -21.75818 -20.52543 -20.26153 -18.99640 -18.68231 -18.27173 -17.74779 -17.32919 -16.98075 -16.69155 -16.44250 -16.15856 -15.95901 -15.41805 -15.02121 -14.88066 -14.58724 -14.33305 -14.21179 -14.05248 -13.99743 -13.86112 -13.61209 -13.44878 -13.32639 -13.20413 -12.93511 -12.91303 -12.80668 -12.69303 -12.58465 -12.43725 -12.28094 -12.21289 -12.15571 -12.07763 -11.88445 -11.75229 -11.61553 -11.49534 -11.21955 -10.80910 -10.66390 -10.58395 -9.53114 -9.33450 -8.25353 -6.40034 0.98330 1.31438 1.35303 1.39359 1.46555 1.61736 2.29260 2.41667 2.83796 3.04559 3.39237 3.42709 3.64382 3.71657 3.81091 3.84720 3.87517 4.02458 4.07445 4.25755 4.30272 4.42819 4.48948 4.51576 4.60952 4.63334 4.65278 4.73902 4.74843 4.77227 4.85430 4.87580 4.91094 4.93771 5.00887 5.03386 5.08866 5.15794 5.16931 5.18233 5.27057 5.32652 5.37468 5.44993 5.48857 5.53910 5.76733 5.97961 6.01764 6.04678 6.53661 6.67479 6.68783 7.19572 7.34620 8.81789 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002723 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.432922 B =10280.020785 C =10542.796109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 H 0.111 0.889 4 O -0.340 6.340 5 C 0.445 3.555 6 O -0.494 6.494 7 C 0.085 3.915 8 H 0.120 0.880 9 C -0.136 4.136 10 N -0.525 5.525 11 C 0.067 3.933 12 H 0.092 0.908 13 C -0.198 4.198 14 C -0.131 4.131 15 C -0.129 4.129 16 C 0.080 3.920 17 H 0.059 0.941 18 C -0.093 4.093 19 C 0.499 3.501 20 O -0.578 6.578 21 N -0.600 5.600 22 C 0.069 3.931 23 C 0.261 3.739 24 C -0.548 4.548 25 H 0.050 0.950 26 C 0.011 3.989 27 N -0.926 5.926 28 Si 0.965 3.035 29 H -0.260 1.260 30 H -0.276 1.276 31 H -0.280 1.280 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.051 0.949 47 H 0.029 0.971 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.034 0.966 52 H 0.001 0.999 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 7.646 -25.797 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.128 0.872 4 O -0.255 6.255 5 C 0.289 3.711 6 O -0.382 6.382 7 C -0.023 4.023 8 H 0.137 0.863 9 C -0.193 4.193 10 N -0.252 5.252 11 C -0.040 4.040 12 H 0.110 0.890 13 C -0.255 4.255 14 C -0.169 4.169 15 C -0.167 4.167 16 C -0.028 4.028 17 H 0.077 0.923 18 C -0.150 4.150 19 C 0.286 3.714 20 O -0.458 6.458 21 N -0.332 5.332 22 C -0.073 4.073 23 C 0.140 3.860 24 C -0.586 4.586 25 H 0.069 0.931 26 C -0.189 4.189 27 N -0.565 5.565 28 Si 0.789 3.211 29 H -0.184 1.184 30 H -0.200 1.200 31 H -0.206 1.206 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.052 0.948 52 H 0.019 0.981 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.880 7.429 -25.401 27.345 hybrid contribution 0.279 0.019 0.731 0.783 sum -6.601 7.448 -24.670 26.602 Atomic orbital electron populations 1.22380 0.89300 1.04421 1.06033 1.22450 0.97707 0.96475 0.81026 0.87175 1.86609 1.76880 1.42203 1.19853 1.24411 0.74991 0.85874 0.85854 1.90802 1.47547 1.15831 1.84051 1.21783 0.98886 0.93860 0.87808 0.86349 1.21843 0.98709 0.96085 1.02666 1.63929 1.49546 1.01908 1.09847 1.22540 1.00973 0.95005 0.85449 0.89037 1.22879 1.01013 0.97414 1.04199 1.22947 1.01355 0.93919 0.98655 1.22919 1.02605 0.97735 0.93472 1.22693 0.96490 0.88451 0.95124 0.92339 1.21552 0.98882 0.97535 0.97051 1.20694 0.80651 0.84859 0.85200 1.90663 1.39488 1.28767 1.86871 1.48040 1.50171 1.29559 1.05456 1.22226 0.94729 0.86310 1.04023 1.18833 0.93858 0.91824 0.81501 1.21656 1.05929 1.19424 1.11630 0.93131 1.25816 1.01718 0.95200 0.96119 1.70028 1.40657 1.27118 1.18688 0.85507 0.78875 0.79171 0.77516 1.18427 1.20038 1.20571 0.91407 0.87185 0.89408 0.88777 0.93951 0.90949 0.91637 0.90290 0.89912 0.90616 0.89252 0.89951 0.90911 0.94210 0.93027 0.95238 0.89588 0.90760 0.89462 0.94836 0.98114 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.18 71.98 0.66 -3.19 16 2 C 0.08 2.66 2.18 29.85 0.06 2.73 16 3 H 0.11 3.44 6.41 -2.39 -0.02 3.42 16 4 O -0.34 -11.36 8.81 -45.10 -0.40 -11.75 16 5 C 0.44 12.55 6.87 71.24 0.49 13.04 16 6 O -0.49 -14.13 8.37 21.98 0.18 -13.94 16 7 C 0.09 1.88 2.16 44.17 0.10 1.97 16 8 H 0.12 2.08 5.66 -2.39 -0.01 2.07 16 9 C -0.14 -3.08 7.96 71.98 0.57 -2.51 16 10 N -0.52 -10.94 4.63 -815.24 -3.77 -14.71 16 11 C 0.07 0.99 3.75 45.26 0.17 1.16 16 12 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 13 C -0.20 -2.29 7.95 71.98 0.57 -1.71 16 14 C -0.13 -1.56 6.47 31.77 0.21 -1.36 16 15 C -0.13 -1.97 6.45 31.98 0.21 -1.76 16 16 C 0.08 1.68 2.32 45.39 0.11 1.79 16 17 H 0.06 1.34 6.32 -2.39 -0.02 1.32 16 18 C -0.09 -2.32 7.90 71.98 0.57 -1.75 16 19 C 0.50 21.95 7.15 87.66 0.63 22.58 16 20 O -0.58 -31.72 16.08 15.77 0.25 -31.46 16 21 N -0.60 -25.77 2.86 -851.13 -2.43 -28.20 16 22 C 0.07 2.01 8.81 127.77 1.13 3.14 16 23 C 0.26 14.13 5.16 85.63 0.44 14.57 16 24 C -0.55 -32.01 9.39 25.60 0.24 -31.77 16 25 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 26 C 0.01 0.63 5.46 84.65 0.46 1.10 16 27 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 28 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 29 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 30 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 31 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 2.15 4.55 -2.39 -0.01 2.14 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.66 6.51 -2.39 -0.02 1.65 16 36 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 0.67 7.29 -2.39 -0.02 0.65 16 39 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 1.09 3.22 -2.39 -0.01 1.09 16 41 H 0.08 0.81 7.34 -2.39 -0.02 0.79 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.14 7.69 -2.39 -0.02 1.13 16 45 H 0.04 0.90 7.51 -2.39 -0.02 0.89 16 46 H 0.05 1.30 7.62 -2.39 -0.02 1.28 16 47 H 0.03 0.90 6.44 -2.39 -0.02 0.89 16 48 H 0.09 1.95 6.97 -2.39 -0.02 1.94 16 49 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 50 H 0.09 2.07 6.00 -2.39 -0.01 2.05 16 51 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 52 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 53 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.32 398.34 3.66 -72.66 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.90 Total: 17.73 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.61 Total: 18.01 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -5.92 Total: -98.72 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: 0.04 Total: -57.16 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.32 3.66 -72.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741023564.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.423 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds