Wall clock time and date at job start Wed Apr 1 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34631 * 117.00132 * 2 1 4 4 O 1.21505 * 120.00174 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00077 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63333 * 180.02562 * 5 3 2 7 7 C 1.53189 * 108.77251 * 233.58411 * 6 5 3 8 8 C 1.53049 * 109.31630 * 305.36250 * 7 6 5 9 9 C 1.52992 * 109.46109 * 181.38860 * 8 7 6 10 10 H 1.09002 * 109.47103 * 299.97040 * 9 8 7 11 11 C 1.52997 * 109.47482 * 59.97287 * 9 8 7 12 12 N 1.46497 * 109.47081 * 179.97438 * 9 8 7 13 13 C 1.34777 * 120.00376 * 155.00022 * 12 9 8 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 9 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 9 16 16 C 1.52999 * 109.47204 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47249 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47249 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46911 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00062 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99747 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99960 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46977 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47271 * 119.99968 * 23 21 19 26 26 H 1.48506 * 109.47106 * 240.00153 * 23 21 19 27 27 C 1.53042 * 109.52476 * 61.37087 * 8 7 6 28 28 C 1.46935 * 120.62616 * 359.97079 * 5 3 2 29 29 H 1.08997 * 109.47659 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46945 * 300.00317 * 1 2 3 31 31 H 1.09002 * 109.46731 * 59.99625 * 1 2 3 32 32 H 1.08995 * 109.58787 * 113.79548 * 6 5 3 33 33 H 1.08998 * 109.58311 * 353.37209 * 6 5 3 34 34 H 1.08997 * 109.49975 * 185.41372 * 7 6 5 35 35 H 1.09004 * 109.49800 * 65.31486 * 7 6 5 36 36 H 1.09002 * 109.45741 * 301.36490 * 8 7 6 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 9 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 9 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 40 40 H 0.97006 * 119.99921 * 334.99446 * 12 9 8 41 41 H 1.08995 * 109.47183 * 300.00111 * 15 13 12 42 42 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 43 43 H 1.08999 * 109.47113 * 300.00023 * 16 15 13 44 44 H 1.08999 * 109.46749 * 60.00120 * 16 15 13 45 45 H 1.08995 * 109.47384 * 300.00682 * 17 16 15 46 46 H 1.09009 * 109.46937 * 59.99935 * 17 16 15 47 47 H 1.08999 * 109.47113 * 300.00296 * 18 17 16 48 48 H 1.08999 * 109.46749 * 60.00394 * 18 17 16 49 49 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.49617 * 58.58251 * 27 8 7 51 51 H 1.08997 * 109.50004 * 178.67694 * 27 8 7 52 52 H 1.08993 * 109.58567 * 246.20092 * 28 5 3 53 53 H 1.08991 * 109.58764 * 6.49138 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0907 2.5717 0.0000 7 6 5.0816 2.6099 -1.1675 8 6 6.0235 1.4073 -1.0717 9 6 7.0367 1.4609 -2.2167 10 1 6.5093 1.4338 -3.1702 11 6 7.8484 2.7542 -2.1195 12 7 7.9387 0.3102 -2.1248 13 6 8.5601 -0.1489 -3.2292 14 8 8.3721 0.3903 -4.2991 15 6 9.4884 -1.3323 -3.1345 16 6 10.0570 -1.6466 -4.5197 17 6 11.0000 -2.8476 -4.4235 18 6 11.5680 -3.1623 -5.8088 19 6 12.4964 -4.3457 -5.7140 20 1 12.6640 -4.8255 -4.7612 21 6 13.1316 -4.8157 -6.8439 22 7 12.9278 -4.2310 -8.0041 23 14 14.2818 -6.2829 -6.7267 24 1 14.3399 -6.7552 -5.3199 25 1 13.7790 -7.3767 -7.5961 26 1 15.6413 -5.8829 -7.1706 27 6 5.2122 0.1133 -1.1688 28 6 4.2229 0.0466 -0.0004 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 4.6276 2.7027 0.9395 33 1 3.3564 3.3686 -0.1177 34 1 5.6623 3.5312 -1.1220 35 1 4.5353 2.5699 -2.1099 36 1 6.5511 1.4344 -0.1182 37 1 8.3759 2.7813 -1.1660 38 1 7.1772 3.6103 -2.1879 39 1 8.5706 2.7921 -2.9351 40 1 8.0889 -0.1212 -1.2691 41 1 10.3046 -1.0999 -2.4505 42 1 8.9382 -2.1969 -2.7631 43 1 9.2405 -1.8791 -5.2033 44 1 10.6071 -0.7821 -4.8913 45 1 11.8164 -2.6147 -3.7399 46 1 10.4502 -3.7123 -4.0515 47 1 10.7514 -3.3954 -6.4920 48 1 12.1177 -2.2978 -6.1810 49 1 13.3744 -4.5619 -8.7991 50 1 4.6646 0.0970 -2.1111 51 1 5.8857 -0.7426 -1.1241 52 1 4.7706 -0.0279 0.9389 53 1 3.5756 -0.8227 -0.1160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805199761.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:00 Heat of formation + Delta-G solvation = -174.324022 kcal Electronic energy + Delta-G solvation = -29444.759295 eV Core-core repulsion = 25314.237780 eV Total energy + Delta-G solvation = -4130.521515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.78172 -40.96270 -39.50171 -37.57759 -36.81688 -36.38133 -34.59462 -33.82999 -32.19266 -31.73308 -30.58958 -28.54428 -27.48434 -26.44215 -24.67785 -24.05604 -23.10978 -21.91653 -21.58369 -21.36133 -20.66746 -19.18433 -18.41529 -18.16710 -17.77731 -17.60075 -17.15470 -16.77282 -16.48154 -15.86232 -15.63438 -15.42960 -15.18933 -15.06896 -15.02737 -14.58824 -14.51324 -14.39386 -14.01996 -13.77254 -13.59746 -13.55570 -13.44255 -13.20740 -12.97341 -12.94831 -12.82188 -12.48387 -12.29929 -12.24791 -12.12489 -12.10265 -11.83853 -11.82240 -11.63138 -11.60122 -11.36588 -11.33795 -11.32945 -11.11824 -10.65959 -10.55048 -10.03740 -9.80502 -8.18026 -6.30231 1.14985 1.41137 1.42064 1.55534 1.66139 1.74379 2.26422 2.42837 2.91278 3.14778 3.55567 3.72799 3.81095 3.93921 4.05550 4.10655 4.18438 4.28197 4.31348 4.32908 4.33750 4.38178 4.43607 4.54126 4.65906 4.67060 4.72721 4.73316 4.79966 4.83567 4.87672 4.88887 4.90125 4.92637 4.98496 5.06501 5.15366 5.22218 5.26770 5.33114 5.35528 5.38597 5.42694 5.50188 5.58086 5.65012 5.79664 5.89335 6.21226 6.26255 6.67165 6.88719 7.14739 7.39340 7.39710 8.94368 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.001585 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.532493 B =17660.671087 C =18575.725060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.374 6.374 3 C 0.640 3.360 4 O -0.611 6.611 5 N -0.591 5.591 6 C 0.127 3.873 7 C -0.125 4.125 8 C -0.082 4.082 9 C 0.147 3.853 10 H 0.054 0.946 11 C -0.162 4.162 12 N -0.711 5.711 13 C 0.511 3.489 14 O -0.591 6.591 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.095 4.095 18 C 0.017 3.983 19 C -0.541 4.541 20 H 0.067 0.933 21 C -0.008 4.008 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.256 1.256 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.128 4.128 28 C 0.113 3.887 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.418 0.582 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.061 0.939 46 H 0.061 0.939 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.262 0.738 50 H 0.045 0.955 51 H 0.094 0.906 52 H 0.099 0.901 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.503 12.054 26.204 35.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.288 6.288 3 C 0.394 3.606 4 O -0.504 6.504 5 N -0.331 5.331 6 C 0.006 3.994 7 C -0.164 4.164 8 C -0.100 4.100 9 C 0.042 3.958 10 H 0.072 0.928 11 C -0.220 4.220 12 N -0.364 5.364 13 C 0.300 3.700 14 O -0.471 6.471 15 C -0.168 4.168 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.020 4.020 19 C -0.579 4.579 20 H 0.085 0.915 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.180 1.180 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.166 4.166 28 C -0.008 4.008 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.256 0.744 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.113 0.887 52 H 0.117 0.883 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.873 12.694 25.298 35.771 hybrid contribution 0.359 -0.589 -0.802 1.058 sum -21.514 12.105 24.496 34.777 Atomic orbital electron populations 1.23459 0.73059 1.05495 1.02387 1.86239 1.25551 1.30237 1.86738 1.18369 0.83958 0.82089 0.76149 1.90958 1.65225 1.36147 1.58036 1.47162 1.01259 1.09967 1.74734 1.21782 0.94894 0.82690 1.00004 1.22007 0.96869 0.99522 0.97965 1.21372 0.94715 0.94959 0.98989 1.20910 0.90141 0.85651 0.99049 0.92785 1.22207 1.00387 0.97258 1.02162 1.45931 1.46390 1.33070 1.10963 1.21146 0.80448 0.84902 0.83550 1.90702 1.64797 1.61029 1.30576 1.21669 0.99473 0.96692 0.98953 1.21239 0.98158 0.97596 0.96467 1.21447 0.97826 0.96708 0.97298 1.19077 0.94356 0.94844 0.93740 1.21799 1.26472 1.14847 0.94759 0.91471 1.26102 0.98859 1.00489 0.95011 1.70142 1.44861 1.42962 0.99898 0.85326 0.78011 0.78404 0.78843 1.17998 1.20528 1.20529 1.21973 0.97963 0.98758 0.97919 1.21919 0.93524 0.85513 0.99867 0.84812 0.91931 0.92520 0.88177 0.90154 0.87770 0.93033 0.87117 0.90332 0.90096 0.95177 0.74434 0.86363 0.86244 0.94115 0.94157 0.92033 0.92002 0.99797 0.99801 0.92902 0.93572 0.88723 0.88265 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -6.11 9.20 -55.40 -0.51 -6.62 16 3 C 0.64 12.48 8.43 129.79 1.09 13.57 16 4 O -0.61 -15.82 15.54 19.82 0.31 -15.51 16 5 N -0.59 -7.91 2.97 -949.18 -2.82 -10.73 16 6 C 0.13 1.28 6.43 86.36 0.56 1.84 16 7 C -0.13 -1.10 5.04 30.67 0.15 -0.95 16 8 C -0.08 -0.62 1.79 -10.77 -0.02 -0.64 16 9 C 0.15 2.12 2.16 44.99 0.10 2.21 16 10 H 0.05 1.18 7.58 -2.39 -0.02 1.16 16 11 C -0.16 -2.24 9.13 71.98 0.66 -1.59 16 12 N -0.71 -10.39 4.36 -442.56 -1.93 -12.32 16 13 C 0.51 12.70 7.79 87.66 0.68 13.38 16 14 O -0.59 -21.41 15.64 -3.03 -0.05 -21.45 16 15 C -0.13 -2.93 5.70 29.85 0.17 -2.76 16 16 C -0.10 -3.43 4.50 30.59 0.14 -3.29 16 17 C -0.10 -3.84 5.15 30.59 0.16 -3.69 16 18 C 0.02 0.93 4.97 29.85 0.15 1.08 16 19 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 20 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 21 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 22 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 23 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 C -0.13 -1.15 5.22 30.69 0.16 -0.99 16 28 C 0.11 0.93 6.45 86.38 0.56 1.49 16 29 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.13 7.00 -2.39 -0.02 1.12 16 34 H 0.10 0.59 6.36 -2.39 -0.02 0.57 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.87 6.40 -2.39 -0.02 0.86 16 39 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.42 2.87 8.39 -92.70 -0.78 2.09 16 41 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 44 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 45 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 47 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.09 0.64 7.41 -2.39 -0.02 0.62 16 52 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 53 H 0.09 0.84 6.92 -2.39 -0.02 0.83 16 Total: -1.00 -85.33 422.34 3.86 -81.47 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.10 Total: 6.97 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 6.45 Total: -9.68 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -4.47 Total: -81.92 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.25 Total: -43.58 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -85.33 3.86 -81.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805199761.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.857 kcal (2) G-P(sol) polarization free energy of solvation -85.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds