Wall clock time and date at job start Tue Mar 31 2020 23:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46371 * 2 1 4 4 C 1.53042 * 109.45958 * 240.02500 * 2 1 3 5 5 C 1.53119 * 109.27728 * 299.16058 * 4 2 1 6 6 C 1.53118 * 109.15853 * 302.34705 * 5 4 2 7 7 H 1.08997 * 109.50207 * 297.70604 * 6 5 4 8 8 C 1.50707 * 109.49804 * 177.59891 * 6 5 4 9 9 O 1.20836 * 119.99308 * 239.99633 * 8 6 5 10 10 O 1.34219 * 120.00358 * 59.99852 * 8 6 5 11 11 C 1.45202 * 116.99897 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47240 * 60.00015 * 11 10 8 13 13 C 1.53003 * 109.46948 * 179.97438 * 11 10 8 14 14 C 1.52992 * 109.47186 * 299.99823 * 11 10 8 15 15 C 1.53037 * 109.28207 * 57.65804 * 6 5 4 16 16 N 1.46846 * 109.51782 * 300.81735 * 15 6 5 17 17 C 1.46903 * 110.99907 * 185.84061 * 16 15 6 18 18 C 1.50698 * 109.47200 * 169.52174 * 17 16 15 19 19 O 1.21279 * 120.00089 * 353.77298 * 18 17 16 20 20 N 1.34779 * 120.00093 * 173.78279 * 18 17 16 21 21 C 1.46499 * 120.00251 * 179.97438 * 20 18 17 22 22 C 1.50691 * 109.47135 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00471 * 359.97438 * 22 21 20 24 24 C 1.37885 * 120.00091 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00368 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99890 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47177 * 89.99482 * 26 24 22 28 28 H 1.48491 * 109.47445 * 210.00081 * 26 24 22 29 29 H 1.48508 * 109.46933 * 329.99786 * 26 24 22 30 30 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46461 * 299.97453 * 1 2 3 32 32 H 1.08991 * 109.47244 * 59.97458 * 1 2 3 33 33 H 1.09005 * 109.50039 * 179.21880 * 4 2 1 34 34 H 1.08999 * 109.49998 * 59.10488 * 4 2 1 35 35 H 1.09003 * 109.52262 * 62.24954 * 5 4 2 36 36 H 1.09001 * 109.52322 * 182.44225 * 5 4 2 37 37 H 1.09006 * 109.47022 * 59.99908 * 12 11 10 38 38 H 1.08994 * 109.47081 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.46781 * 300.00224 * 12 11 10 40 40 H 1.08999 * 109.47051 * 60.00281 * 13 11 10 41 41 H 1.09004 * 109.47185 * 179.97438 * 13 11 10 42 42 H 1.08997 * 109.47233 * 300.00240 * 13 11 10 43 43 H 1.09004 * 109.47345 * 60.00401 * 14 11 10 44 44 H 1.09004 * 109.47017 * 179.97438 * 14 11 10 45 45 H 1.09002 * 109.47754 * 300.00216 * 14 11 10 46 46 H 1.08994 * 109.46396 * 180.80600 * 15 6 5 47 47 H 1.09001 * 109.45439 * 60.82711 * 15 6 5 48 48 H 1.09003 * 109.46706 * 289.51706 * 17 16 15 49 49 H 1.08994 * 109.47133 * 49.51430 * 17 16 15 50 50 H 0.97004 * 119.99555 * 359.97438 * 20 18 17 51 51 H 1.09006 * 109.46564 * 299.99617 * 21 20 18 52 52 H 1.08995 * 109.47259 * 59.99424 * 21 20 18 53 53 H 0.96995 * 120.00498 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 1.5442 -2.1696 -1.2355 6 6 2.0269 -2.8531 0.0468 7 1 3.1166 -2.8750 0.0594 8 6 1.4940 -4.2619 0.0972 9 8 0.7826 -4.6063 1.0113 10 8 1.8096 -5.1340 -0.8730 11 6 1.2611 -6.4736 -0.7592 12 6 -0.2671 -6.4002 -0.7535 13 6 1.7262 -7.3177 -1.9476 14 6 1.7458 -7.1142 0.5428 15 6 1.5174 -2.0704 1.2592 16 7 2.0194 -0.6917 1.1994 17 6 1.6653 0.0507 2.4165 18 6 2.4060 1.3630 2.4379 19 8 3.2387 1.6031 1.5895 20 7 2.1431 2.2696 3.3999 21 6 2.8636 3.5450 3.4210 22 6 2.3868 4.3720 4.5870 23 1 1.6232 3.9863 5.2463 24 6 2.9255 5.6211 4.8124 25 7 2.5091 6.3431 5.8297 26 14 4.2457 6.2885 3.6718 27 1 3.6069 7.0376 2.5601 28 1 5.1421 7.1974 4.4304 29 1 5.0377 5.1609 3.1181 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5135 0.8903 32 1 -0.3633 0.5142 -0.8897 33 1 3.1298 -0.7092 -1.2577 34 1 1.6636 -0.2164 -2.1399 35 1 0.4547 -2.1822 -1.2670 36 1 1.9408 -2.6990 -2.1019 37 1 -0.6125 -5.9438 -1.6813 38 1 -0.6788 -7.4058 -0.6686 39 1 -0.5988 -5.7987 0.0927 40 1 2.8150 -7.3700 -1.9520 41 1 1.3149 -8.3235 -1.8619 42 1 1.3806 -6.8611 -2.8750 43 1 1.4141 -6.5127 1.3892 44 1 1.3337 -8.1197 0.6284 45 1 2.8346 -7.1665 0.5389 46 1 1.8714 -2.5463 2.1736 47 1 0.4275 -2.0607 1.2532 48 1 0.5917 0.2393 2.4277 49 1 1.9402 -0.5361 3.2929 50 1 1.4769 2.0775 4.0783 51 1 3.9325 3.3568 3.5215 52 1 2.6753 4.0841 2.4926 53 1 2.8877 7.2219 5.9880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817277070.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:32 Heat of formation + Delta-G solvation = -148.021662 kcal Electronic energy + Delta-G solvation = -30942.563793 eV Core-core repulsion = 26813.182833 eV Total energy + Delta-G solvation = -4129.380960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14732 -41.08922 -39.70034 -37.97949 -36.12490 -35.29896 -34.50511 -34.33960 -33.03149 -30.54173 -28.90268 -28.37013 -28.28232 -27.82949 -25.37584 -24.52535 -23.54385 -22.66258 -21.45425 -20.56086 -19.73403 -19.06480 -18.28891 -17.67698 -17.53382 -17.24263 -16.98234 -16.88276 -16.62367 -15.92241 -15.72582 -15.55894 -15.32392 -14.98907 -14.71159 -14.57917 -14.44965 -14.28258 -14.25396 -13.86829 -13.83707 -13.36003 -13.32596 -13.08399 -13.04387 -12.95605 -12.93086 -12.86051 -12.84555 -12.65616 -12.46002 -12.16613 -12.13332 -11.93235 -11.70603 -11.65201 -11.50652 -11.37668 -11.31712 -10.91629 -10.89280 -10.63193 -9.87857 -9.24385 -8.39720 -6.46597 1.18364 1.32775 1.35125 1.47883 1.58612 1.78368 2.28065 2.34818 2.95618 3.02527 3.46995 3.67553 3.74616 3.77891 3.82832 3.91050 3.96398 4.03901 4.09237 4.19441 4.30404 4.39365 4.48192 4.55288 4.59351 4.60631 4.60944 4.64981 4.71013 4.77043 4.81174 4.83004 4.88757 4.89886 4.93265 5.03499 5.04763 5.07273 5.13419 5.14820 5.22625 5.26594 5.27906 5.30510 5.47424 5.55410 5.56382 5.92260 6.11348 6.11679 6.54728 6.80790 6.89664 7.16765 7.46757 8.74974 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.002040 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.281116 B =13723.454615 C =14009.430439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 H 0.069 0.931 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.074 4.074 7 H 0.118 0.882 8 C 0.476 3.524 9 O -0.522 6.522 10 O -0.352 6.352 11 C 0.105 3.895 12 C -0.179 4.179 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.075 3.925 16 N -0.525 5.525 17 C 0.043 3.957 18 C 0.502 3.498 19 O -0.575 6.575 20 N -0.709 5.709 21 C 0.235 3.765 22 C -0.547 4.547 23 H 0.059 0.941 24 C 0.025 3.975 25 N -0.931 5.931 26 Si 0.938 3.062 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.261 1.261 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.084 0.916 49 H 0.123 0.877 50 H 0.407 0.593 51 H 0.011 0.989 52 H 0.010 0.990 53 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -28.832 -17.648 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.038 4.038 3 H 0.087 0.913 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.094 4.094 7 H 0.136 0.864 8 C 0.320 3.680 9 O -0.411 6.411 10 O -0.269 6.269 11 C 0.070 3.930 12 C -0.236 4.236 13 C -0.194 4.194 14 C -0.238 4.238 15 C -0.053 4.053 16 N -0.249 5.249 17 C -0.087 4.087 18 C 0.289 3.711 19 O -0.454 6.454 20 N -0.360 5.360 21 C 0.112 3.888 22 C -0.585 4.585 23 H 0.077 0.923 24 C -0.175 4.175 25 N -0.570 5.570 26 Si 0.762 3.238 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.185 1.185 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.141 0.859 50 H 0.242 0.758 51 H 0.029 0.971 52 H 0.028 0.972 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.309 -28.648 -17.915 34.062 hybrid contribution -0.627 0.820 0.676 1.234 sum -4.936 -27.828 -17.239 33.105 Atomic orbital electron populations 1.22477 0.96605 1.02591 1.02663 1.21834 0.93189 0.98516 0.90300 0.91308 1.21513 1.01385 0.94566 0.96426 1.21556 1.01378 0.95535 0.95498 1.21027 1.03455 0.86764 0.98139 0.86387 1.23610 0.77248 0.88071 0.79056 1.90585 1.35924 1.79185 1.35448 1.86551 1.68887 1.23362 1.48089 1.22487 0.93981 0.78597 0.97944 1.22452 0.93886 1.04334 1.02977 1.21872 1.02636 0.99274 0.95606 1.22467 1.01911 1.02404 0.97049 1.21828 0.98469 0.87378 0.97589 1.61653 1.60323 1.01562 1.01323 1.21951 0.99113 0.92079 0.95590 1.21115 0.83158 0.86094 0.80742 1.90615 1.35739 1.79584 1.39494 1.46040 1.42249 1.17348 1.30390 1.19035 0.92109 0.82071 0.95626 1.21316 1.23520 1.01722 1.11912 0.92312 1.25617 0.98567 0.96778 0.96546 1.69982 1.44325 1.12408 1.30302 0.85844 0.79672 0.79022 0.79268 1.18952 1.19875 1.18499 0.91216 0.93186 0.90893 0.91578 0.89519 0.90983 0.89059 0.91647 0.89372 0.92009 0.91350 0.88485 0.91121 0.91996 0.89300 0.91878 0.89971 0.93067 0.89799 0.85936 0.75752 0.97138 0.97160 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.19 71.98 0.59 -3.12 16 2 C 0.07 1.69 2.59 44.94 0.12 1.81 16 3 H 0.07 2.20 6.04 -2.38 -0.01 2.18 16 4 C -0.10 -1.94 5.61 30.65 0.17 -1.77 16 5 C -0.10 -1.60 4.91 30.67 0.15 -1.45 16 6 C -0.07 -1.35 2.79 -11.49 -0.03 -1.38 16 7 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 8 C 0.48 9.25 6.57 71.24 0.47 9.72 16 9 O -0.52 -12.09 11.49 21.93 0.25 -11.84 16 10 O -0.35 -6.16 9.82 -51.31 -0.50 -6.67 16 11 C 0.11 1.47 1.13 -10.79 -0.01 1.46 16 12 C -0.18 -2.43 8.37 71.98 0.60 -1.82 16 13 C -0.14 -1.19 8.85 71.98 0.64 -0.55 16 14 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16 15 C 0.07 1.54 3.74 86.33 0.32 1.87 16 16 N -0.52 -13.17 4.30 -875.65 -3.76 -16.94 16 17 C 0.04 1.13 5.29 85.56 0.45 1.58 16 18 C 0.50 18.45 7.36 87.66 0.65 19.09 16 19 O -0.57 -25.46 14.70 -3.03 -0.04 -25.51 16 20 N -0.71 -28.20 5.55 -466.80 -2.59 -30.79 16 21 C 0.24 11.58 4.50 85.63 0.38 11.96 16 22 C -0.55 -30.32 9.83 25.60 0.25 -30.07 16 23 H 0.06 3.42 7.84 -2.91 -0.02 3.39 16 24 C 0.03 1.43 5.47 84.66 0.46 1.89 16 25 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 26 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 29 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 30 H 0.07 1.25 4.80 -2.39 -0.01 1.24 16 31 H 0.05 1.07 6.42 -2.38 -0.02 1.06 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.08 6.56 -2.39 -0.02 1.06 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.14 5.89 -2.39 -0.01 1.13 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 1.18 5.89 -2.38 -0.01 1.17 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.72 7.98 -2.39 -0.02 1.70 16 47 H 0.05 1.04 6.13 -2.39 -0.01 1.03 16 48 H 0.08 1.88 6.20 -2.39 -0.01 1.86 16 49 H 0.12 2.71 7.98 -2.39 -0.02 2.69 16 50 H 0.41 14.16 8.32 -92.71 -0.77 13.39 16 51 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 52 H 0.01 0.53 7.57 -2.39 -0.02 0.52 16 53 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -70.16 402.43 1.43 -68.73 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.08 Total: 25.10 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.82 Total: 7.24 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -6.05 Total: -103.28 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.30 Total: -44.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -70.16 1.43 -68.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817277070.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.293 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds