Wall clock time and date at job start Tue Mar 31 2020 23:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52214 * 2 1 4 4 C 1.53043 * 109.49623 * 239.91481 * 2 1 3 5 5 C 1.53031 * 109.53788 * 301.41289 * 4 2 1 6 6 C 1.53195 * 109.31701 * 298.64013 * 5 4 2 7 7 N 1.46919 * 108.77565 * 54.63360 * 6 5 4 8 8 C 1.34773 * 120.63217 * 126.41968 * 7 6 5 9 9 O 1.21684 * 120.00219 * 185.12702 * 8 7 6 10 10 C 1.46374 * 120.00031 * 5.12653 * 8 7 6 11 11 H 1.08007 * 119.99423 * 345.67657 * 10 8 7 12 12 C 1.40050 * 120.00125 * 165.67730 * 10 8 7 13 13 N 1.30674 * 119.99877 * 166.66575 * 12 10 8 14 14 Si 1.86789 * 120.00111 * 346.66881 * 12 10 8 15 15 H 1.48499 * 109.47323 * 84.79828 * 14 12 10 16 16 H 1.48504 * 109.47130 * 204.79967 * 14 12 10 17 17 H 1.48506 * 109.47038 * 324.79771 * 14 12 10 18 18 C 1.46933 * 118.73908 * 306.39396 * 7 6 5 19 19 H 1.09003 * 109.58359 * 293.82426 * 18 7 6 20 20 C 1.53002 * 109.58715 * 173.39772 * 18 7 6 21 21 C 1.52999 * 109.47240 * 179.20859 * 20 18 7 22 22 N 1.46493 * 109.47100 * 180.02562 * 21 20 18 23 23 C 1.34776 * 120.00002 * 179.97438 * 22 21 20 24 24 O 1.21519 * 119.99830 * 0.02562 * 23 22 21 25 25 O 1.34640 * 120.00254 * 180.02562 * 23 22 21 26 26 C 1.45198 * 116.99964 * 179.97438 * 25 23 22 27 27 C 1.53003 * 109.46937 * 60.00264 * 26 25 23 28 28 C 1.53002 * 109.47018 * 179.97438 * 26 25 23 29 29 C 1.52995 * 109.47467 * 300.00068 * 26 25 23 30 30 H 1.08999 * 109.47124 * 299.92799 * 1 2 3 31 31 H 1.09002 * 109.46791 * 59.92136 * 1 2 3 32 32 H 1.08993 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.45218 * 181.39521 * 4 2 1 34 34 H 1.08992 * 109.45742 * 61.44173 * 4 2 1 35 35 H 1.09001 * 109.49909 * 178.68058 * 5 4 2 36 36 H 1.09004 * 109.49746 * 58.59029 * 5 4 2 37 37 H 1.09007 * 109.58114 * 294.84320 * 6 5 4 38 38 H 1.09002 * 109.70676 * 174.49587 * 6 5 4 39 39 H 0.96997 * 119.99999 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.47247 * 299.21054 * 20 18 7 41 41 H 1.08998 * 109.46926 * 59.21016 * 20 18 7 42 42 H 1.09006 * 109.46667 * 300.02223 * 21 20 18 43 43 H 1.09005 * 109.46913 * 60.01849 * 21 20 18 44 44 H 0.97001 * 120.00152 * 359.97438 * 22 21 20 45 45 H 1.08999 * 109.47288 * 59.99509 * 27 26 25 46 46 H 1.09000 * 109.47029 * 179.97438 * 27 26 25 47 47 H 1.09005 * 109.47210 * 299.99617 * 27 26 25 48 48 H 1.09004 * 109.46946 * 60.00533 * 28 26 25 49 49 H 1.08999 * 109.47052 * 179.97438 * 28 26 25 50 50 H 1.08999 * 109.47217 * 300.00497 * 28 26 25 51 51 H 1.09005 * 109.47059 * 60.00151 * 29 26 25 52 52 H 1.08999 * 109.47465 * 180.02562 * 29 26 25 53 53 H 1.08995 * 109.47138 * 300.00048 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 1.5030 -2.1558 -1.2658 6 6 2.0139 -2.9040 -0.0305 7 7 1.6514 -2.1381 1.1697 8 6 0.9747 -2.7219 2.1785 9 8 0.5989 -2.0557 3.1248 10 6 0.6917 -4.1574 2.1357 11 1 0.8122 -4.7042 1.2121 12 6 0.2648 -4.8217 3.2923 13 7 -0.2346 -6.0263 3.2072 14 14 0.4093 -3.9860 4.9566 15 1 -0.7775 -3.1222 5.1814 16 1 0.4806 -5.0166 6.0234 17 1 1.6396 -3.1550 4.9880 18 6 2.0413 -0.7237 1.2496 19 1 3.1275 -0.6462 1.2981 20 6 1.4228 -0.0909 2.4979 21 6 1.8464 1.3764 2.5891 22 7 1.2548 1.9820 3.7846 23 6 1.4924 3.2772 4.0719 24 8 2.1971 3.9427 3.3389 25 8 0.9491 3.8337 5.1709 26 6 1.2484 5.2329 5.4179 27 6 0.7517 6.0760 4.2418 28 6 0.5482 5.6854 6.7008 29 6 2.7601 5.4117 5.5712 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1305 -0.7445 -1.2351 34 1 1.6989 -0.1959 -2.1388 35 1 1.8480 -2.6629 -2.1669 36 1 0.4133 -2.1355 -1.2540 37 1 3.0979 -3.0044 -0.0865 38 1 1.5574 -3.8928 0.0152 39 1 -0.5300 -6.4866 4.0083 40 1 0.3363 -0.1523 2.4361 41 1 1.7670 -0.6242 3.3840 42 1 2.9330 1.4377 2.6506 43 1 1.5019 1.9097 1.7031 44 1 0.6919 1.4509 4.3695 45 1 -0.3253 5.9486 4.1326 46 1 0.9760 7.1264 4.4274 47 1 1.2502 5.7538 3.3275 48 1 0.9017 5.0848 7.5390 49 1 0.7733 6.7356 6.8865 50 1 -0.5288 5.5580 6.5913 51 1 3.2587 5.0894 4.6569 52 1 2.9848 6.4620 5.7571 53 1 3.1140 4.8111 6.4090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846440858.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:28 Heat of formation + Delta-G solvation = -144.943210 kcal Electronic energy + Delta-G solvation = -31836.058160 eV Core-core repulsion = 27706.810693 eV Total energy + Delta-G solvation = -4129.247468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.83677 -41.27988 -38.61337 -38.21614 -36.40945 -35.17931 -34.91275 -34.18054 -33.36751 -30.25444 -28.92685 -28.35659 -28.29741 -27.51824 -25.78983 -24.68762 -23.22001 -22.25092 -21.71311 -20.98367 -19.54134 -19.17363 -18.55207 -17.68842 -17.56925 -17.41607 -16.94223 -16.46691 -16.25195 -15.90589 -15.74246 -15.41838 -15.26690 -14.97423 -14.65122 -14.45238 -14.42005 -14.34451 -13.91507 -13.70333 -13.45735 -13.34063 -13.16564 -13.13577 -13.01056 -12.89088 -12.86719 -12.65285 -12.62507 -12.45190 -12.31837 -12.23948 -12.13801 -11.78932 -11.65227 -11.53345 -11.38877 -11.28162 -11.12001 -11.09640 -11.03440 -10.18828 -9.34440 -9.08755 -8.75280 -6.92890 1.18520 1.35797 1.40191 1.59893 1.74592 2.15483 2.33220 2.68737 3.17756 3.37942 3.75698 3.78622 3.80373 3.90491 3.95140 3.99784 4.11206 4.22909 4.30538 4.38875 4.45225 4.50328 4.60516 4.62085 4.66523 4.71404 4.76444 4.76535 4.81155 4.85117 4.86837 4.87521 4.99633 5.06517 5.08798 5.11570 5.14249 5.21758 5.24904 5.28801 5.34479 5.35094 5.37629 5.41708 5.55785 5.58629 5.66786 5.75111 6.13629 6.32847 6.38805 6.70000 7.23190 7.31339 8.10130 8.30974 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003317 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.172662 B = 8439.979310 C =10345.115724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.093 0.907 4 C -0.105 4.105 5 C -0.131 4.131 6 C 0.114 3.886 7 N -0.622 5.622 8 C 0.558 3.442 9 O -0.625 6.625 10 C -0.557 4.557 11 H 0.079 0.921 12 C 0.071 3.929 13 N -0.855 5.855 14 Si 1.012 2.988 15 H -0.289 1.289 16 H -0.308 1.308 17 H -0.283 1.283 18 C 0.159 3.841 19 H 0.070 0.930 20 C -0.103 4.103 21 C 0.139 3.861 22 N -0.705 5.705 23 C 0.647 3.353 24 O -0.590 6.590 25 O -0.374 6.374 26 C 0.121 3.879 27 C -0.178 4.178 28 C -0.136 4.136 29 C -0.179 4.179 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.289 0.711 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.410 0.590 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.106 0.894 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.094 0.906 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 20.082 -1.964 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.143 4.143 5 C -0.169 4.169 6 C -0.009 4.009 7 N -0.355 5.355 8 C 0.365 3.635 9 O -0.519 6.519 10 C -0.593 4.593 11 H 0.097 0.903 12 C -0.144 4.144 13 N -0.486 5.486 14 Si 0.844 3.156 15 H -0.216 1.216 16 H -0.239 1.239 17 H -0.209 1.209 18 C 0.055 3.945 19 H 0.088 0.912 20 C -0.141 4.141 21 C 0.016 3.984 22 N -0.364 5.364 23 C 0.400 3.600 24 O -0.482 6.482 25 O -0.289 6.289 26 C 0.085 3.915 27 C -0.236 4.236 28 C -0.193 4.193 29 C -0.236 4.236 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.245 0.755 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.124 0.876 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.113 0.887 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.496 20.612 -1.826 21.176 hybrid contribution -0.411 -0.726 0.913 1.237 sum 4.084 19.886 -0.913 20.322 Atomic orbital electron populations 1.21801 0.95686 1.00960 1.01202 1.21588 0.96011 0.99738 0.94676 0.88858 1.21504 1.00894 0.94765 0.97125 1.21932 1.00768 0.96744 0.97423 1.21666 0.99569 0.95606 0.84051 1.47608 1.58590 1.10139 1.19116 1.18032 0.76608 0.88093 0.80809 1.90233 1.60158 1.64325 1.37228 1.21086 1.46708 0.92911 0.98574 0.90296 1.26251 0.89530 0.94555 1.04107 1.69605 1.32110 1.13863 1.33003 0.84581 0.79433 0.75228 0.76355 1.21625 1.23886 1.20920 1.21056 0.97871 0.80937 0.94652 0.91243 1.22114 1.01990 0.91357 0.98648 1.21567 0.97684 0.93646 0.85517 1.44861 1.54042 1.08329 1.29126 1.18177 0.78701 0.82927 0.80171 1.90861 1.42758 1.62201 1.52333 1.86333 1.69758 1.30451 1.42366 1.22469 0.96520 0.75041 0.97491 1.22467 1.01479 1.01144 0.98461 1.21893 1.00881 1.02916 0.93617 1.22468 0.94211 1.04075 1.02854 0.93751 0.91502 0.94436 0.90802 0.90155 0.89238 0.92831 0.91668 0.90994 0.90115 0.91186 0.91498 0.91627 0.90707 0.75490 0.92182 0.88748 0.91877 0.91501 0.87569 0.91398 0.91916 0.88714 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.20 71.98 0.59 -3.36 16 2 C -0.10 -2.57 2.32 -10.71 -0.02 -2.60 16 3 H 0.09 2.05 6.79 -2.39 -0.02 2.03 16 4 C -0.11 -2.29 5.43 30.62 0.17 -2.12 16 5 C -0.13 -3.36 5.74 30.67 0.18 -3.18 16 6 C 0.11 3.78 6.32 86.37 0.55 4.33 16 7 N -0.62 -24.39 2.41 -800.07 -1.93 -26.31 16 8 C 0.56 27.62 7.17 86.36 0.62 28.24 16 9 O -0.63 -32.46 8.16 -4.30 -0.04 -32.50 16 10 C -0.56 -30.50 9.36 24.83 0.23 -30.27 16 11 H 0.08 4.39 5.93 -2.91 -0.02 4.37 16 12 C 0.07 3.95 5.52 85.30 0.47 4.42 16 13 N -0.85 -48.17 13.92 21.84 0.30 -47.87 16 14 Si 1.01 51.14 25.79 68.60 1.77 52.90 16 15 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 16 H -0.31 -14.63 7.11 99.48 0.71 -13.93 16 17 H -0.28 -14.76 6.92 99.48 0.69 -14.07 16 18 C 0.16 5.10 2.71 44.97 0.12 5.22 16 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 20 C -0.10 -3.56 2.79 30.59 0.09 -3.48 16 21 C 0.14 4.00 5.36 86.38 0.46 4.46 16 22 N -0.70 -20.86 5.56 -590.84 -3.28 -24.15 16 23 C 0.65 19.60 8.06 129.79 1.05 20.65 16 24 O -0.59 -19.41 11.88 19.78 0.24 -19.18 16 25 O -0.37 -10.21 9.94 -55.50 -0.55 -10.77 16 26 C 0.12 2.52 1.13 -10.79 -0.01 2.51 16 27 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 28 C -0.14 -1.96 8.85 71.98 0.64 -1.33 16 29 C -0.18 -3.59 8.37 71.98 0.60 -2.99 16 30 H 0.04 1.34 6.32 -2.39 -0.02 1.32 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.27 5.97 -2.39 -0.01 1.26 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.56 6.33 -2.39 -0.02 1.54 16 37 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.07 2.76 5.38 -2.39 -0.01 2.75 16 39 H 0.29 14.96 8.29 -92.71 -0.77 14.19 16 40 H 0.07 2.72 5.23 -2.39 -0.01 2.71 16 41 H 0.07 2.78 6.37 -2.39 -0.02 2.76 16 42 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.07 2.04 6.61 -2.38 -0.02 2.02 16 44 H 0.41 11.96 8.58 -92.71 -0.80 11.16 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.60 5.88 -2.38 -0.01 1.58 16 48 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 1.61 5.88 -2.38 -0.01 1.60 16 52 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.48 392.03 2.93 -63.54 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.10 Total: 26.75 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.32 Total: 17.58 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -4.91 Total: -98.33 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -0.35 Total: -62.44 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.77 Total: 52.90 kcal Total: -66.48 2.93 -63.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846440858.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.399 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds