Wall clock time and date at job start Tue Mar 31 2020 23:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.50026 * 2 1 4 4 C 1.53041 * 109.49862 * 120.06638 * 2 1 3 5 5 C 1.53043 * 109.53836 * 181.31351 * 4 2 1 6 6 C 1.53192 * 109.31441 * 298.63708 * 5 4 2 7 7 N 1.46923 * 108.77403 * 54.63334 * 6 5 4 8 8 C 1.34776 * 120.62865 * 126.36591 * 7 6 5 9 9 O 1.21695 * 120.00243 * 174.27641 * 8 7 6 10 10 C 1.46379 * 120.00291 * 354.28637 * 8 7 6 11 11 H 1.08000 * 119.99207 * 6.77621 * 10 8 7 12 12 C 1.40045 * 120.00209 * 186.77879 * 10 8 7 13 13 N 1.30670 * 119.99814 * 197.15168 * 12 10 8 14 14 Si 1.86794 * 120.00015 * 17.15042 * 12 10 8 15 15 H 1.48496 * 109.47563 * 269.99981 * 14 12 10 16 16 H 1.48505 * 109.47252 * 30.00038 * 14 12 10 17 17 H 1.48495 * 109.47167 * 149.99916 * 14 12 10 18 18 C 1.46930 * 118.74381 * 306.64532 * 7 6 5 19 19 H 1.08998 * 109.58238 * 293.56979 * 18 7 6 20 20 C 1.52995 * 109.58806 * 173.14610 * 18 7 6 21 21 C 1.53000 * 109.46909 * 295.35330 * 20 18 7 22 22 N 1.46504 * 109.46803 * 175.96116 * 21 20 18 23 23 C 1.34778 * 119.99692 * 180.02562 * 22 21 20 24 24 O 1.21509 * 119.99976 * 359.97438 * 23 22 21 25 25 O 1.34634 * 119.99834 * 180.02562 * 23 22 21 26 26 C 1.45203 * 116.99961 * 179.97438 * 25 23 22 27 27 C 1.53001 * 109.47003 * 59.99799 * 26 25 23 28 28 C 1.53008 * 109.46938 * 179.97438 * 26 25 23 29 29 C 1.52995 * 109.47214 * 299.99501 * 26 25 23 30 30 H 1.08996 * 109.46560 * 299.93482 * 1 2 3 31 31 H 1.09006 * 109.46778 * 59.93039 * 1 2 3 32 32 H 1.08991 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.45323 * 61.29390 * 4 2 1 34 34 H 1.08996 * 109.45907 * 301.33904 * 4 2 1 35 35 H 1.08996 * 109.49385 * 178.68328 * 5 4 2 36 36 H 1.09006 * 109.49487 * 58.58931 * 5 4 2 37 37 H 1.08999 * 109.58670 * 294.84816 * 6 5 4 38 38 H 1.08992 * 109.70140 * 174.49325 * 6 5 4 39 39 H 0.97006 * 120.00213 * 354.94645 * 13 12 10 40 40 H 1.09002 * 109.47501 * 55.35884 * 20 18 7 41 41 H 1.09005 * 109.47060 * 175.36001 * 20 18 7 42 42 H 1.09000 * 109.47530 * 295.96247 * 21 20 18 43 43 H 1.09005 * 109.47160 * 55.96739 * 21 20 18 44 44 H 0.97000 * 120.00100 * 0.02562 * 22 21 20 45 45 H 1.08999 * 109.46981 * 60.00131 * 27 26 25 46 46 H 1.09002 * 109.46864 * 179.97438 * 27 26 25 47 47 H 1.08990 * 109.47244 * 300.00220 * 27 26 25 48 48 H 1.09000 * 109.47113 * 60.00179 * 28 26 25 49 49 H 1.08999 * 109.46357 * 180.02562 * 28 26 25 50 50 H 1.08996 * 109.46689 * 299.99878 * 28 26 25 51 51 H 1.09004 * 109.46498 * 60.00253 * 29 26 25 52 52 H 1.08999 * 109.47425 * 179.97438 * 29 26 25 53 53 H 1.09000 * 109.47471 * 300.00209 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7228 1.2485 5 6 3.5709 -0.6947 1.2661 6 6 4.1054 -1.4267 0.0311 7 7 3.5046 -0.8294 -1.1694 8 6 4.2812 -0.3861 -2.1778 9 8 3.7715 0.0104 -3.2093 10 6 5.7377 -0.3816 -2.0325 11 1 6.1951 -0.8334 -1.1646 12 6 6.5381 0.2084 -3.0187 13 7 7.8140 -0.0675 -3.0760 14 14 5.7816 1.3897 -4.2521 15 1 5.3109 0.6317 -5.4391 16 1 4.6326 2.0912 -3.6253 17 1 6.7998 2.3854 -4.6726 18 6 2.0416 -0.7189 -1.2470 19 1 1.6021 -1.7151 -1.2971 20 6 1.6529 0.0796 -2.4929 21 6 2.1669 1.5145 -2.3598 22 7 1.8796 2.2523 -3.5924 23 6 2.2447 3.5448 -3.7047 24 8 2.8119 4.0982 -2.7835 25 8 1.9802 4.2231 -4.8373 26 6 2.4017 5.6117 -4.8878 27 6 3.9188 5.6911 -4.7058 28 6 2.0188 6.2119 -6.2421 29 6 1.7121 6.3950 -3.7690 30 1 -0.3632 0.5128 0.8906 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7569 1.2356 34 1 1.6582 -0.2240 2.1389 35 1 3.9334 -1.1892 2.1673 36 1 3.9160 0.3392 1.2540 37 1 3.8376 -2.4818 0.0873 38 1 5.1897 -1.3269 -0.0146 39 1 8.2215 -0.6224 -2.3926 40 1 2.0950 -0.3846 -3.3745 41 1 0.5676 0.0904 -2.5935 42 1 1.6708 2.0019 -1.5205 43 1 3.2432 1.5004 -2.1874 44 1 1.4265 1.8107 -4.3277 45 1 4.4100 5.1331 -5.5029 46 1 4.2352 6.7335 -4.7441 47 1 4.1919 5.2633 -3.7412 48 1 0.9381 6.1553 -6.3722 49 1 2.3357 7.2542 -6.2801 50 1 2.5104 5.6538 -7.0388 51 1 1.9853 5.9672 -2.8044 52 1 2.0288 7.4373 -3.8066 53 1 0.6313 6.3384 -3.8986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846440863.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:36 Heat of formation + Delta-G solvation = -136.557350 kcal Electronic energy + Delta-G solvation = -33174.123663 eV Core-core repulsion = 29045.239834 eV Total energy + Delta-G solvation = -4128.883830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.85430 -41.32402 -38.38039 -38.24657 -36.29677 -35.23165 -34.91862 -34.36085 -33.33020 -30.39330 -28.47349 -28.36904 -28.27453 -27.13629 -26.05317 -24.22787 -23.06915 -22.30945 -21.77018 -20.99312 -20.21486 -19.27769 -18.91992 -17.72924 -17.59123 -17.24800 -16.83281 -16.46149 -16.18820 -15.80671 -15.53394 -15.32037 -15.28163 -14.82689 -14.79692 -14.69260 -14.30311 -14.24490 -13.87907 -13.63301 -13.36459 -13.31019 -13.17813 -12.94779 -12.91139 -12.88606 -12.84389 -12.61623 -12.55583 -12.33887 -12.27626 -12.16379 -11.84770 -11.76849 -11.69740 -11.38873 -11.36331 -11.25974 -11.14529 -11.01561 -10.92648 -9.92495 -9.51158 -9.08855 -8.94774 -7.01579 1.29696 1.40832 1.51684 1.86742 1.93134 2.20167 2.33681 2.70424 3.29389 3.36088 3.77661 3.81153 3.84018 3.86847 3.96114 3.99024 4.13418 4.27960 4.35235 4.45473 4.48473 4.55536 4.59650 4.61232 4.71139 4.72710 4.75741 4.80300 4.83454 4.88639 4.90496 4.94077 4.94814 5.04555 5.09758 5.11997 5.24033 5.27294 5.29331 5.31372 5.33446 5.41892 5.43046 5.54170 5.55598 5.61441 5.65058 5.68341 5.98297 6.29331 6.56934 6.72790 7.15200 7.47173 8.13543 8.15574 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.005035 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.115207 B = 5560.237967 C = 7430.572019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 H 0.051 0.949 4 C -0.103 4.103 5 C -0.129 4.129 6 C 0.116 3.884 7 N -0.631 5.631 8 C 0.559 3.441 9 O -0.607 6.607 10 C -0.619 4.619 11 H 0.068 0.932 12 C 0.036 3.964 13 N -0.857 5.857 14 Si 1.145 2.855 15 H -0.295 1.295 16 H -0.267 1.267 17 H -0.333 1.333 18 C 0.163 3.837 19 H 0.076 0.924 20 C -0.124 4.124 21 C 0.160 3.840 22 N -0.690 5.690 23 C 0.642 3.358 24 O -0.599 6.599 25 O -0.373 6.373 26 C 0.121 3.879 27 C -0.187 4.187 28 C -0.132 4.132 29 C -0.174 4.174 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.277 0.723 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.410 0.590 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.055 0.945 52 H 0.094 0.906 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 5.118 2.750 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.168 4.168 6 C -0.008 4.008 7 N -0.364 5.364 8 C 0.367 3.633 9 O -0.501 6.501 10 C -0.655 4.655 11 H 0.086 0.914 12 C -0.178 4.178 13 N -0.486 5.486 14 Si 0.976 3.024 15 H -0.223 1.223 16 H -0.193 1.193 17 H -0.266 1.266 18 C 0.059 3.941 19 H 0.094 0.906 20 C -0.161 4.161 21 C 0.038 3.962 22 N -0.347 5.347 23 C 0.395 3.605 24 O -0.491 6.491 25 O -0.288 6.288 26 C 0.085 3.915 27 C -0.244 4.244 28 C -0.189 4.189 29 C -0.232 4.232 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.245 0.755 45 H 0.070 0.930 46 H 0.117 0.883 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.124 0.876 50 H 0.083 0.917 51 H 0.074 0.926 52 H 0.112 0.888 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.320 6.457 1.421 17.608 hybrid contribution 0.655 -1.378 1.327 2.022 sum -15.665 5.079 2.748 16.695 Atomic orbital electron populations 1.21751 0.92588 1.02794 1.02233 1.21564 0.97289 0.99045 0.94848 0.93088 1.21522 0.94052 1.01287 0.97228 1.21884 0.97146 1.00103 0.97622 1.21600 0.98366 0.96361 0.84427 1.47702 1.05564 1.64426 1.18664 1.17924 0.87284 0.75978 0.82159 1.90184 1.73479 1.55537 1.30891 1.22306 0.91954 1.41503 1.09768 0.91407 1.27541 0.94332 0.96246 0.99697 1.70650 1.13568 1.32320 1.32099 0.82299 0.72450 0.73694 0.73916 1.22271 1.19330 1.26571 1.21030 0.80043 0.98426 0.94612 0.90599 1.22212 0.99758 0.93513 1.00598 1.21576 1.00842 0.90976 0.82787 1.44656 1.61740 1.07880 1.20450 1.18255 0.77835 0.83046 0.81338 1.90849 1.47177 1.69358 1.41702 1.86282 1.76887 1.28107 1.37566 1.22454 0.94257 0.75681 0.99134 1.22537 0.95165 1.04177 1.02526 1.21873 1.03220 1.01670 0.92120 1.22428 1.00820 1.01346 0.98564 0.91638 0.92579 0.91143 0.90486 0.90493 0.89203 0.94008 0.91572 0.91648 0.91246 0.88318 0.90293 0.93912 0.92733 0.75522 0.92983 0.88290 0.92932 0.90519 0.87569 0.91688 0.92556 0.88758 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.97 71.98 0.65 -1.99 16 2 C -0.11 -2.82 2.01 -10.86 -0.02 -2.84 16 3 H 0.05 1.62 6.11 -2.38 -0.01 1.61 16 4 C -0.10 -2.33 5.17 30.62 0.16 -2.17 16 5 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 6 C 0.12 3.94 6.35 86.36 0.55 4.49 16 7 N -0.63 -24.89 2.94 -800.88 -2.35 -27.25 16 8 C 0.56 27.71 5.82 86.36 0.50 28.21 16 9 O -0.61 -30.49 6.53 -4.33 -0.03 -30.52 16 10 C -0.62 -34.51 9.22 24.83 0.23 -34.28 16 11 H 0.07 3.79 5.86 -2.91 -0.02 3.77 16 12 C 0.04 2.13 5.51 85.30 0.47 2.60 16 13 N -0.86 -51.08 13.64 21.83 0.30 -50.79 16 14 Si 1.14 62.06 26.32 68.60 1.81 63.86 16 15 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 16 H -0.27 -14.67 5.22 99.48 0.52 -14.15 16 17 H -0.33 -18.12 7.11 99.48 0.71 -17.42 16 18 C 0.16 5.09 2.64 44.83 0.12 5.21 16 19 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 20 C -0.12 -4.06 4.22 30.59 0.13 -3.93 16 21 C 0.16 6.21 3.88 86.38 0.33 6.54 16 22 N -0.69 -25.67 5.56 -590.84 -3.29 -28.96 16 23 C 0.64 25.63 7.60 129.79 0.99 26.62 16 24 O -0.60 -27.15 11.88 19.81 0.24 -26.91 16 25 O -0.37 -12.83 9.94 -55.43 -0.55 -13.38 16 26 C 0.12 3.38 1.13 -10.79 -0.01 3.36 16 27 C -0.19 -5.78 8.37 71.98 0.60 -5.18 16 28 C -0.13 -2.49 8.85 71.98 0.64 -1.86 16 29 C -0.17 -4.42 8.37 71.98 0.60 -3.82 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.11 6.71 -2.38 -0.02 1.10 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.60 5.30 -2.39 -0.01 2.58 16 39 H 0.28 15.91 8.72 -92.70 -0.81 15.10 16 40 H 0.10 3.84 5.69 -22.26 -0.13 3.71 16 41 H 0.08 2.03 6.84 -2.38 -0.02 2.02 16 42 H 0.04 1.62 6.47 -2.39 -0.02 1.60 16 43 H 0.05 2.68 4.06 -2.38 -0.01 2.67 16 44 H 0.41 13.12 8.58 -92.71 -0.80 12.33 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.05 2.06 5.88 -2.39 -0.01 2.04 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.06 1.83 5.88 -2.38 -0.01 1.81 16 52 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -71.17 388.67 2.02 -69.15 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.22 Total: 27.19 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.12 Total: 17.61 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -5.34 Total: -106.99 kcal Atomic # 8 Polarization: -70.47 SS G_CDS: -0.34 Total: -70.81 kcal Atomic # 14 Polarization: 62.06 SS G_CDS: 1.81 Total: 63.86 kcal Total: -71.17 2.02 -69.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846440863.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.411 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds