Wall clock time and date at job start Wed Apr 1 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50886 * 2 1 4 4 C 1.53038 * 109.53466 * 120.09911 * 2 1 3 5 5 N 1.46844 * 109.52455 * 179.14061 * 4 2 1 6 6 C 1.46906 * 111.00139 * 174.15524 * 5 4 2 7 7 C 1.50704 * 109.47172 * 190.25208 * 6 5 4 8 8 O 1.21280 * 120.00014 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00067 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.46983 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00538 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99661 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.46846 * 111.20046 * 298.25585 * 5 4 2 20 20 C 1.53039 * 109.52305 * 61.73964 * 19 5 4 21 21 C 1.53119 * 109.27895 * 300.82510 * 20 19 5 22 22 H 1.09002 * 109.52738 * 297.68541 * 21 20 19 23 23 C 1.50700 * 109.52347 * 177.55813 * 21 20 19 24 24 O 1.20832 * 119.99878 * 240.00007 * 23 21 20 25 25 O 1.34228 * 119.99857 * 60.00178 * 23 21 20 26 26 C 1.45211 * 116.99727 * 180.02562 * 25 23 21 27 27 C 1.52998 * 109.47288 * 59.99825 * 26 25 23 28 28 C 1.52995 * 109.46837 * 180.02562 * 26 25 23 29 29 C 1.52996 * 109.46616 * 299.99589 * 26 25 23 30 30 H 1.08993 * 109.47179 * 180.08112 * 1 2 3 31 31 H 1.09000 * 109.46851 * 300.07980 * 1 2 3 32 32 H 1.08996 * 109.46915 * 60.07866 * 1 2 3 33 33 H 1.08997 * 109.46786 * 59.11902 * 4 2 1 34 34 H 1.09003 * 109.46069 * 299.15251 * 4 2 1 35 35 H 1.08999 * 109.46431 * 70.25854 * 6 5 4 36 36 H 1.08998 * 109.47102 * 310.25685 * 6 5 4 37 37 H 0.97003 * 119.99826 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.46847 * 60.00131 * 10 9 7 39 39 H 1.09000 * 109.46849 * 300.00511 * 10 9 7 40 40 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 41 41 H 1.08997 * 109.47173 * 181.75846 * 19 5 4 42 42 H 1.09007 * 109.46191 * 301.73995 * 19 5 4 43 43 H 1.08999 * 109.50145 * 60.76452 * 20 19 5 44 44 H 1.09005 * 109.50546 * 180.84634 * 20 19 5 45 45 H 1.08997 * 109.46745 * 59.99620 * 27 26 25 46 46 H 1.08994 * 109.46872 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.47117 * 300.00072 * 27 26 25 48 48 H 1.09002 * 109.47453 * 59.99434 * 28 26 25 49 49 H 1.08999 * 109.47056 * 179.97438 * 28 26 25 50 50 H 1.09004 * 109.47175 * 299.99884 * 28 26 25 51 51 H 1.09001 * 109.47591 * 60.00463 * 29 26 25 52 52 H 1.08999 * 109.46634 * 180.02562 * 29 26 25 53 53 H 1.08997 * 109.47790 * 299.99916 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0417 -0.7233 1.2478 5 7 3.5100 -0.7412 1.2372 6 6 4.0387 -1.3047 2.4866 7 6 5.5274 -1.0786 2.5493 8 8 6.0922 -0.5043 1.6427 9 7 6.2309 -1.5139 3.6133 10 6 7.6779 -1.2937 3.6745 11 6 8.2202 -1.8719 4.9561 12 1 7.5536 -2.3547 5.6554 13 6 9.5673 -1.7836 5.2365 14 7 10.3790 -1.1952 4.3853 15 14 10.2395 -2.4996 6.8255 16 1 10.6317 -3.9147 6.6039 17 1 9.1946 -2.4348 7.8787 18 1 11.4265 -1.7187 7.2572 19 6 4.0238 -1.4716 0.0716 20 6 3.5713 -0.7708 -1.2114 21 6 2.0413 -0.7235 -1.2489 22 1 1.6458 -1.7390 -1.2703 23 6 1.5904 0.0185 -2.4807 24 8 0.9231 1.0200 -2.3723 25 8 1.9300 -0.4332 -3.6982 26 6 1.4613 0.3323 -4.8397 27 6 2.0144 1.7566 -4.7606 28 6 1.9430 -0.3315 -6.1313 29 6 -0.0679 0.3777 -4.8299 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6661 -1.7465 1.2543 34 1 1.6913 -0.2024 2.1389 35 1 3.8320 -2.3744 2.5187 36 1 3.5610 -0.8166 3.3361 37 1 5.7790 -1.9730 4.3386 38 1 7.8843 -0.2239 3.6422 39 1 8.1559 -1.7818 2.8252 40 1 10.0300 -0.8237 3.5600 41 1 5.1129 -1.4943 0.1081 42 1 3.6387 -2.4914 0.0833 43 1 3.9673 0.2446 -1.2305 44 1 3.9402 -1.3216 -2.0767 45 1 3.1039 1.7241 -4.7674 46 1 1.6622 2.3312 -5.6171 47 1 1.6708 2.2292 -3.8403 48 1 1.5487 -1.3461 -6.1874 49 1 1.5908 0.2428 -6.9881 50 1 3.0326 -0.3643 -6.1384 51 1 -0.4116 0.8503 -3.9097 52 1 -0.4198 0.9518 -5.6870 53 1 -0.4620 -0.6370 -4.8863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859616457.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:02 Heat of formation + Delta-G solvation = -159.876566 kcal Electronic energy + Delta-G solvation = -30703.899324 eV Core-core repulsion = 26574.004297 eV Total energy + Delta-G solvation = -4129.895027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16726 -40.93839 -39.64832 -37.98304 -36.41177 -35.32688 -34.88564 -34.43251 -33.07634 -30.04540 -28.40775 -28.32318 -28.17751 -27.81765 -25.46326 -24.42306 -23.40961 -22.68348 -21.32287 -20.92039 -20.48470 -19.34694 -18.30658 -17.87778 -17.56013 -17.11759 -16.93409 -16.58750 -16.17717 -15.88401 -15.63033 -15.52602 -15.34219 -15.18696 -15.05990 -14.54808 -14.50740 -14.25339 -14.16744 -14.12803 -13.61036 -13.29198 -13.12466 -13.08823 -12.99186 -12.96695 -12.91127 -12.85336 -12.59165 -12.56896 -12.52684 -12.43347 -12.04499 -11.89265 -11.84722 -11.72080 -11.45376 -11.36667 -10.97955 -10.82948 -10.75714 -10.58492 -9.92233 -9.27171 -8.79415 -6.54890 1.17615 1.55847 1.65110 1.67597 1.73439 1.82426 2.25318 2.56699 2.98386 3.08432 3.41522 3.64739 3.65768 3.72524 3.78177 3.87939 3.93347 4.01779 4.13111 4.26274 4.28682 4.38331 4.42039 4.51636 4.55758 4.57748 4.62534 4.69240 4.73238 4.77411 4.78267 4.80045 4.82915 4.84731 4.88305 4.97116 4.97588 5.07077 5.07893 5.16840 5.23031 5.27219 5.33105 5.35263 5.48957 5.55332 5.62764 5.92655 6.09819 6.14052 6.32204 6.81828 6.85741 7.26209 7.46665 8.59782 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.001952 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.080144 B =14338.903927 C =15147.335428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 H 0.061 0.939 4 C 0.066 3.934 5 N -0.546 5.546 6 C 0.052 3.948 7 C 0.493 3.507 8 O -0.584 6.584 9 N -0.707 5.707 10 C 0.256 3.744 11 C -0.628 4.628 12 H 0.077 0.923 13 C -0.035 4.035 14 N -0.931 5.931 15 Si 1.132 2.868 16 H -0.270 1.270 17 H -0.260 1.260 18 H -0.286 1.286 19 C 0.056 3.944 20 C -0.095 4.095 21 C -0.073 4.073 22 H 0.126 0.874 23 C 0.471 3.529 24 O -0.514 6.514 25 O -0.357 6.357 26 C 0.105 3.895 27 C -0.181 4.181 28 C -0.138 4.138 29 C -0.177 4.177 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.409 0.591 38 H -0.020 1.020 39 H -0.018 1.018 40 H 0.253 0.747 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.295 -2.372 -15.421 30.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.061 4.061 5 N -0.271 5.271 6 C -0.079 4.079 7 C 0.281 3.719 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.132 3.868 11 C -0.666 4.666 12 H 0.095 0.905 13 C -0.234 4.234 14 N -0.567 5.567 15 Si 0.952 3.048 16 H -0.196 1.196 17 H -0.184 1.184 18 H -0.212 1.212 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.092 4.092 22 H 0.144 0.856 23 C 0.316 3.684 24 O -0.403 6.403 25 O -0.274 6.274 26 C 0.069 3.931 27 C -0.238 4.238 28 C -0.194 4.194 29 C -0.234 4.234 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.245 0.755 38 H -0.003 1.003 39 H 0.000 1.000 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.116 0.884 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.107 0.893 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.568 -1.384 -15.253 28.951 hybrid contribution -1.204 -0.111 -0.909 1.513 sum -25.772 -1.495 -16.163 30.458 Atomic orbital electron populations 1.21904 0.92852 1.02623 1.03139 1.20967 0.96744 0.99157 0.91641 0.92004 1.22230 0.84845 1.00406 0.98613 1.61445 1.09009 1.55462 1.01224 1.21913 0.89524 1.01352 0.95091 1.21484 0.91026 0.77973 0.81447 1.90617 1.73077 1.43576 1.39121 1.46047 1.08858 1.58666 1.22230 1.18610 0.78342 0.93639 0.96201 1.22470 0.96795 1.41928 1.05402 0.90469 1.27672 0.94230 0.94891 1.06561 1.70882 1.38766 1.36222 1.10815 0.82759 0.75702 0.76000 0.70363 1.19568 1.18376 1.21207 1.22122 1.00559 0.94977 0.89469 1.21424 0.92520 1.01471 0.97928 1.21287 0.97262 1.01260 0.89401 0.85641 1.23762 0.76215 0.83323 0.85138 1.90529 1.36831 1.25628 1.87311 1.86565 1.70986 1.54736 1.15161 1.22475 0.95055 0.91223 0.84309 1.22459 1.01252 0.95875 1.04217 1.21874 1.02294 1.01808 0.93467 1.22433 0.93412 1.03247 1.04293 0.91466 0.91521 0.91938 0.92252 0.88767 0.89152 0.85327 0.75504 1.00251 1.00042 0.93731 0.91815 0.92957 0.93037 0.89421 0.92532 0.89166 0.92031 0.90991 0.88372 0.91780 0.91756 0.89345 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.91 71.98 0.64 -1.70 16 2 C -0.07 -1.28 2.02 -10.74 -0.02 -1.30 16 3 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 4 C 0.07 1.18 4.74 86.33 0.41 1.59 16 5 N -0.55 -14.06 4.39 -900.91 -3.96 -18.02 16 6 C 0.05 1.30 5.45 85.56 0.47 1.77 16 7 C 0.49 19.18 7.50 87.66 0.66 19.83 16 8 O -0.58 -28.35 14.35 -3.03 -0.04 -28.40 16 9 N -0.71 -29.38 5.55 -466.80 -2.59 -31.97 16 10 C 0.26 13.94 4.74 85.63 0.41 14.34 16 11 C -0.63 -34.45 9.28 25.60 0.24 -34.22 16 12 H 0.08 3.85 7.60 -2.91 -0.02 3.83 16 13 C -0.04 -1.99 5.46 84.65 0.46 -1.53 16 14 N -0.93 -58.10 13.65 21.45 0.29 -57.81 16 15 Si 1.13 47.97 29.90 68.60 2.05 50.02 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 18 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.06 1.48 5.11 86.33 0.44 1.92 16 20 C -0.10 -2.25 5.31 30.65 0.16 -2.08 16 21 C -0.07 -1.41 2.20 -11.46 -0.03 -1.43 16 22 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 23 C 0.47 10.26 6.29 71.24 0.45 10.70 16 24 O -0.51 -12.71 9.32 21.95 0.20 -12.51 16 25 O -0.36 -7.34 9.82 -51.40 -0.50 -7.84 16 26 C 0.10 1.74 1.13 -10.80 -0.01 1.73 16 27 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 28 C -0.14 -1.59 8.85 71.98 0.64 -0.95 16 29 C -0.18 -2.60 8.37 71.98 0.60 -2.00 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.21 5.73 -2.39 -0.01 1.20 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.48 8.01 -2.39 -0.02 1.46 16 35 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 36 H 0.13 2.56 7.98 -2.39 -0.02 2.54 16 37 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 38 H -0.02 -1.24 8.01 -2.39 -0.02 -1.26 16 39 H -0.02 -1.11 8.01 -2.39 -0.02 -1.12 16 40 H 0.25 16.45 7.22 -92.71 -0.67 15.78 16 41 H 0.06 2.21 5.80 -2.39 -0.01 2.20 16 42 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.39 5.89 -2.38 -0.01 1.37 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.06 1.23 5.89 -2.39 -0.01 1.21 16 52 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.18 410.65 1.78 -74.40 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.21 Total: 28.05 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.12 Total: 4.08 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -6.25 Total: -107.80 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.34 Total: -48.75 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.02 kcal Total: -76.18 1.78 -74.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859616457.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.481 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds