Wall clock time and date at job start Wed Apr 1 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.66153 * 2 1 4 4 C 1.54600 * 110.98935 * 236.84054 * 2 1 3 5 5 N 1.48108 * 103.42418 * 204.37588 * 4 2 1 6 6 C 1.34779 * 127.03778 * 219.28518 * 5 4 2 7 7 O 1.21281 * 120.00460 * 179.68399 * 6 5 4 8 8 C 1.50706 * 119.99503 * 359.68237 * 6 5 4 9 9 C 1.52999 * 109.47112 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00621 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00111 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00717 * 14 12 10 18 18 C 1.47488 * 105.93420 * 39.02687 * 5 4 2 19 19 C 1.54004 * 107.08039 * 334.77662 * 18 5 4 20 20 H 1.09002 * 110.32663 * 120.30454 * 19 18 5 21 21 C 1.53000 * 110.32909 * 242.41259 * 19 18 5 22 22 N 1.46494 * 109.47586 * 293.55342 * 21 19 18 23 23 C 1.34778 * 120.00683 * 179.97438 * 22 21 19 24 24 O 1.21512 * 119.99364 * 359.97438 * 23 22 21 25 25 O 1.34631 * 120.00494 * 179.97438 * 23 22 21 26 26 C 1.45198 * 117.00146 * 180.02562 * 25 23 22 27 27 C 1.52998 * 109.47456 * 59.99416 * 26 25 23 28 28 C 1.53002 * 109.47032 * 179.97438 * 26 25 23 29 29 C 1.53001 * 109.46781 * 299.99614 * 26 25 23 30 30 H 1.09000 * 109.47157 * 296.80953 * 1 2 3 31 31 H 1.09006 * 109.46709 * 56.80884 * 1 2 3 32 32 H 1.08998 * 109.47192 * 176.80756 * 1 2 3 33 33 H 1.09001 * 110.62028 * 85.85715 * 4 2 1 34 34 H 1.09001 * 110.54554 * 322.85892 * 4 2 1 35 35 H 1.09005 * 109.46562 * 60.00112 * 8 6 5 36 36 H 1.08996 * 109.47306 * 300.00644 * 8 6 5 37 37 H 1.09008 * 109.46748 * 60.00316 * 9 8 6 38 38 H 1.08991 * 109.47440 * 300.00520 * 9 8 6 39 39 H 0.97000 * 119.99838 * 359.97438 * 13 12 10 40 40 H 1.08995 * 109.91744 * 94.13828 * 18 5 4 41 41 H 1.09001 * 109.91140 * 215.22739 * 18 5 4 42 42 H 1.09007 * 109.46801 * 53.54596 * 21 19 18 43 43 H 1.08996 * 109.47724 * 173.54241 * 21 19 18 44 44 H 0.97007 * 119.99967 * 359.97438 * 22 21 19 45 45 H 1.09008 * 109.46612 * 60.00351 * 27 26 25 46 46 H 1.08997 * 109.47117 * 180.02562 * 27 26 25 47 47 H 1.08998 * 109.47123 * 300.00369 * 27 26 25 48 48 H 1.08997 * 109.47094 * 59.99763 * 28 26 25 49 49 H 1.09004 * 109.46787 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.47170 * 299.99348 * 28 26 25 51 51 H 1.08998 * 109.47153 * 60.00025 * 29 26 25 52 52 H 1.08997 * 109.47031 * 180.02562 * 29 26 25 53 53 H 1.08995 * 109.47216 * 299.99770 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0838 -0.7895 -1.2084 5 7 3.4321 -1.2058 -0.7584 6 6 4.5593 -1.2407 -1.4964 7 8 5.6027 -1.6002 -0.9933 8 6 4.5232 -0.8331 -2.9468 9 6 5.9241 -0.9630 -3.5481 10 6 5.8879 -0.5560 -4.9986 11 1 4.9588 -0.2363 -5.4467 12 6 7.0410 -0.5919 -5.7536 13 7 8.1724 -0.9817 -5.2081 14 14 6.9963 -0.0867 -7.5515 15 1 7.2644 1.3696 -7.6632 16 1 8.0321 -0.8398 -8.3033 17 1 5.6568 -0.3882 -8.1172 18 6 3.2902 -1.5682 0.6642 19 6 2.0775 -0.7916 1.2101 20 1 1.3228 -1.4829 1.5851 21 6 2.5157 0.1677 2.3185 22 7 2.9845 -0.6019 3.4734 23 6 3.4232 0.0370 4.5761 24 8 3.4302 1.2516 4.6119 25 8 3.8535 -0.6703 5.6377 26 6 4.3111 0.0841 6.7908 27 6 3.1696 0.9580 7.3144 28 6 4.7571 -0.8835 7.8890 29 6 5.4885 0.9726 6.3844 30 1 -0.3633 0.4635 0.9172 31 1 -0.3633 0.5626 -0.8601 32 1 -0.3633 -1.0260 -0.0572 33 1 2.1525 -0.1482 -2.0870 34 1 1.4611 -1.6602 -1.4143 35 1 4.1890 0.2015 -3.0252 36 1 3.8333 -1.4798 -3.4889 37 1 6.2587 -1.9975 -3.4696 38 1 6.6136 -0.3161 -3.0059 39 1 8.1957 -1.2437 -4.2744 40 1 3.1177 -2.6402 0.7588 41 1 4.1908 -1.2876 1.2103 42 1 3.3235 0.8014 1.9521 43 1 1.6716 0.7903 2.6150 44 1 2.9792 -1.5716 3.4447 45 1 2.3308 0.3248 7.6040 46 1 3.5133 1.5246 8.1797 47 1 2.8515 1.6472 6.5322 48 1 5.5702 -1.5063 7.5162 49 1 5.1010 -0.3171 8.7545 50 1 3.9180 -1.5162 8.1785 51 1 5.1704 1.6619 5.6022 52 1 5.8323 1.5386 7.2501 53 1 6.3017 0.3501 6.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870367993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:48 Heat of formation + Delta-G solvation = -167.006093 kcal Electronic energy + Delta-G solvation = -30184.303159 eV Core-core repulsion = 26054.098972 eV Total energy + Delta-G solvation = -4130.204186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.90244 -41.25628 -39.42736 -38.27629 -36.06236 -35.98272 -34.99468 -33.85634 -32.89297 -31.25141 -28.39664 -28.32173 -28.15989 -27.22991 -26.50103 -24.27429 -23.54134 -22.44328 -21.51911 -20.75999 -20.25365 -19.27405 -19.04913 -17.77272 -17.70741 -17.52992 -17.15657 -16.70131 -16.35249 -15.95039 -15.70047 -15.61910 -15.40907 -15.21504 -14.79047 -14.54380 -14.42630 -14.10937 -14.04353 -13.78857 -13.55947 -13.37462 -13.32961 -13.11453 -13.04809 -12.94203 -12.88783 -12.71518 -12.62557 -12.50883 -12.36911 -12.14106 -12.08897 -11.92665 -11.85406 -11.75271 -11.60905 -11.42335 -11.15471 -11.01813 -10.69399 -10.57785 -10.29605 -9.78034 -8.71710 -6.43689 1.12092 1.53294 1.54592 1.64299 1.71064 1.81032 1.90731 2.58672 3.06821 3.15088 3.37681 3.44201 3.58918 3.72369 3.77209 3.85046 3.92218 4.10182 4.24786 4.27090 4.29773 4.33506 4.44745 4.51076 4.55607 4.58891 4.59557 4.64943 4.70966 4.73838 4.78519 4.82845 4.84192 4.85514 4.87684 4.99551 5.06039 5.12442 5.18218 5.22808 5.25118 5.28636 5.32314 5.32747 5.36939 5.51890 5.55303 5.90587 6.14450 6.32728 6.42315 6.48537 7.11309 7.28406 7.42802 8.68028 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.002072 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.624092 B =13513.370168 C =14799.689591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.095 3.905 5 N -0.625 5.625 6 C 0.525 3.475 7 O -0.595 6.595 8 C -0.104 4.104 9 C 0.027 3.973 10 C -0.617 4.617 11 H 0.069 0.931 12 C -0.048 4.048 13 N -0.940 5.940 14 Si 1.128 2.872 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.258 1.258 18 C 0.098 3.902 19 C -0.091 4.091 20 H 0.131 0.869 21 C 0.151 3.849 22 N -0.702 5.702 23 C 0.643 3.357 24 O -0.594 6.594 25 O -0.370 6.370 26 C 0.124 3.876 27 C -0.177 4.177 28 C -0.136 4.136 29 C -0.182 4.182 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.103 0.897 37 H -0.022 1.022 38 H -0.024 1.024 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.417 0.583 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.074 0.926 51 H 0.059 0.941 52 H 0.092 0.908 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.980 1.090 24.449 32.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.026 4.026 5 N -0.358 5.358 6 C 0.316 3.684 7 O -0.475 6.475 8 C -0.144 4.144 9 C -0.011 4.011 10 C -0.655 4.655 11 H 0.087 0.913 12 C -0.244 4.244 13 N -0.577 5.577 14 Si 0.948 3.052 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.182 1.182 18 C -0.024 4.024 19 C -0.110 4.110 20 H 0.149 0.851 21 C 0.029 3.971 22 N -0.362 5.362 23 C 0.397 3.603 24 O -0.485 6.485 25 O -0.284 6.284 26 C 0.088 3.912 27 C -0.234 4.234 28 C -0.193 4.193 29 C -0.240 4.240 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 37 H -0.003 1.003 38 H -0.006 1.006 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.253 0.747 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.121 0.879 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.110 0.890 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.400 1.660 23.428 31.109 hybrid contribution 0.066 -0.601 1.536 1.651 sum -20.334 1.060 24.964 32.215 Atomic orbital electron populations 1.21733 0.90841 1.03472 1.03226 1.22196 0.98079 0.98943 0.91756 0.90148 1.22939 0.80982 1.00063 0.98625 1.48885 1.08970 1.66170 1.11807 1.21015 0.81781 0.76295 0.89318 1.90648 1.32447 1.50082 1.74361 1.21455 0.99922 1.03423 0.89599 1.18867 0.92624 0.94084 0.95475 1.22501 0.98171 1.48599 0.96208 0.91280 1.27736 0.91882 0.93910 1.10869 1.70871 1.28832 1.43362 1.14645 0.82831 0.76809 0.76898 0.68670 1.19696 1.21201 1.18227 1.22269 0.98619 1.00142 0.81404 1.22429 0.96693 0.97511 0.94406 0.85108 1.21406 0.99230 0.93465 0.83050 1.44737 1.67271 1.11318 1.12869 1.18312 0.76806 0.84028 0.81202 1.90900 1.60860 1.13615 1.83155 1.86310 1.76415 1.41328 1.24392 1.22416 0.94285 0.92236 0.82252 1.22450 0.97897 1.00392 1.02652 1.21888 1.02424 0.99001 0.95975 1.22493 0.97313 1.00444 1.03717 0.91113 0.91371 0.90844 0.89231 0.88265 0.88127 0.87852 1.00325 1.00593 0.94023 0.90168 0.93165 0.93620 0.89362 0.74676 0.91462 0.89161 0.91954 0.91687 0.87939 0.90733 0.92191 0.88953 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 71.98 0.66 -0.27 16 2 C -0.09 -1.13 3.18 -9.70 -0.03 -1.16 16 3 H 0.08 1.19 7.86 -2.39 -0.02 1.18 16 4 C 0.10 1.67 6.38 86.61 0.55 2.22 16 5 N -0.62 -17.56 3.29 -810.08 -2.67 -20.23 16 6 C 0.53 21.42 7.89 87.66 0.69 22.11 16 7 O -0.59 -30.60 16.32 -3.03 -0.05 -30.65 16 8 C -0.10 -4.37 4.57 29.85 0.14 -4.24 16 9 C 0.03 1.54 3.57 29.85 0.11 1.65 16 10 C -0.62 -36.06 9.11 25.60 0.23 -35.83 16 11 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 12 C -0.05 -2.86 5.46 84.65 0.46 -2.40 16 13 N -0.94 -62.24 13.65 21.45 0.29 -61.95 16 14 Si 1.13 50.84 29.90 68.60 2.05 52.89 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 C 0.10 2.18 6.31 86.53 0.55 2.72 16 19 C -0.09 -1.19 2.64 -9.90 -0.03 -1.22 16 20 H 0.13 0.90 7.86 -2.39 -0.02 0.88 16 21 C 0.15 2.54 4.76 86.38 0.41 2.95 16 22 N -0.70 -12.58 5.29 -590.87 -3.13 -15.70 16 23 C 0.64 15.11 8.06 129.79 1.05 16.16 16 24 O -0.59 -17.00 11.88 19.80 0.24 -16.77 16 25 O -0.37 -7.87 9.94 -55.40 -0.55 -8.42 16 26 C 0.12 2.16 1.13 -10.79 -0.01 2.15 16 27 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 28 C -0.14 -1.51 8.85 71.98 0.64 -0.88 16 29 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.07 0.36 8.11 -2.39 -0.02 0.34 16 33 H 0.09 1.58 7.23 -2.39 -0.02 1.56 16 34 H 0.10 1.32 8.02 -2.39 -0.02 1.30 16 35 H 0.10 3.78 7.90 -2.38 -0.02 3.76 16 36 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 37 H -0.02 -1.37 7.97 -2.38 -0.02 -1.39 16 38 H -0.02 -1.55 7.97 -2.39 -0.02 -1.57 16 39 H 0.25 17.33 7.22 -92.71 -0.67 16.66 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.41 7.49 -2.39 -0.02 1.39 16 42 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.42 5.63 8.43 -92.70 -0.78 4.85 16 45 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 52 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -87.12 420.83 3.00 -84.11 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.20 Total: 17.84 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.62 Total: -1.12 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -5.50 Total: -97.88 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.36 Total: -55.84 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -87.12 3.00 -84.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870367993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.892 kcal (2) G-P(sol) polarization free energy of solvation -87.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds