Wall clock time and date at job start Wed Apr 1 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47133 * 2 1 4 4 C 1.50703 * 109.46830 * 240.00205 * 2 1 3 5 5 H 1.07999 * 119.99722 * 239.99963 * 4 2 1 6 6 C 1.37877 * 119.99873 * 59.99763 * 4 2 1 7 7 N 1.31512 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47187 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46969 * 120.00294 * 8 6 4 11 11 H 1.48498 * 109.46933 * 240.00178 * 8 6 4 12 12 C 1.50699 * 109.47116 * 120.00400 * 2 1 3 13 13 O 1.21278 * 120.00230 * 119.99677 * 12 2 1 14 14 N 1.34781 * 120.00139 * 299.99578 * 12 2 1 15 15 C 1.47020 * 125.65001 * 180.02562 * 14 12 2 16 16 C 1.54325 * 107.27123 * 178.90668 * 15 14 12 17 17 H 1.09000 * 110.72152 * 96.34581 * 16 15 14 18 18 C 1.52992 * 110.71849 * 219.44179 * 16 15 14 19 19 N 1.46499 * 109.47267 * 291.15629 * 18 16 15 20 20 C 1.34784 * 119.99971 * 180.02562 * 19 18 16 21 21 O 1.21511 * 119.99590 * 359.72740 * 20 19 18 22 22 O 1.34632 * 119.99600 * 179.97438 * 20 19 18 23 23 C 1.45208 * 116.99497 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47185 * 60.00244 * 23 22 20 25 25 C 1.53006 * 109.46513 * 180.02562 * 23 22 20 26 26 C 1.52995 * 109.47070 * 299.99898 * 23 22 20 27 27 C 1.55158 * 103.09914 * 337.89596 * 16 15 14 28 28 H 1.09008 * 111.00127 * 277.33406 * 27 16 15 29 29 C 1.53001 * 111.00241 * 153.49090 * 27 16 15 30 30 C 1.47426 * 125.64463 * 359.95873 * 14 12 2 31 31 H 1.09007 * 109.46550 * 299.99650 * 1 2 3 32 32 H 1.08991 * 109.47135 * 59.99777 * 1 2 3 33 33 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99832 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.88152 * 59.48837 * 15 14 12 36 36 H 1.09005 * 110.00971 * 298.39566 * 15 14 12 37 37 H 1.09004 * 109.47330 * 171.15533 * 18 16 15 38 38 H 1.09005 * 109.47124 * 51.15737 * 18 16 15 39 39 H 0.96999 * 119.99984 * 359.97438 * 19 18 16 40 40 H 1.09011 * 109.46913 * 59.99811 * 24 23 22 41 41 H 1.08999 * 109.46952 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47301 * 300.00116 * 24 23 22 43 43 H 1.08998 * 109.47261 * 60.00003 * 25 23 22 44 44 H 1.08999 * 109.46703 * 179.97438 * 25 23 22 45 45 H 1.08994 * 109.47350 * 299.99691 * 25 23 22 46 46 H 1.09005 * 109.47242 * 60.00239 * 26 23 22 47 47 H 1.08999 * 109.47112 * 180.02562 * 26 23 22 48 48 H 1.08998 * 109.47402 * 300.00425 * 26 23 22 49 49 H 1.09004 * 109.47479 * 59.99963 * 29 27 16 50 50 H 1.09003 * 109.47115 * 179.97438 * 29 27 16 51 51 H 1.08995 * 109.47057 * 299.99504 * 29 27 16 52 52 H 1.08996 * 110.36804 * 323.00784 * 30 14 12 53 53 H 1.09008 * 110.36347 * 85.21649 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2862 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1856 -4.8161 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2501 2.4546 15 6 2.1267 -0.8431 3.7327 16 6 1.5408 0.0340 4.8592 17 1 0.6047 -0.3857 5.2275 18 6 2.5470 0.1923 6.0008 19 7 2.7145 -1.0919 6.6857 20 6 3.5582 -1.1926 7.7320 21 8 4.1835 -0.2195 8.1039 22 8 3.7116 -2.3727 8.3617 23 6 4.6364 -2.4073 9.4807 24 6 4.1715 -1.4243 10.5570 25 6 4.6781 -3.8211 10.0641 26 6 6.0342 -2.0132 8.9995 27 6 1.2928 1.3934 4.1535 28 1 2.2068 1.9862 4.1153 29 6 0.1666 2.1697 4.8391 30 6 0.8718 0.9324 2.7337 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.7094 1.1619 -3.4843 35 1 3.2147 -0.8518 3.7975 36 1 1.7423 -1.8596 3.8164 37 1 2.1800 0.9361 6.7081 38 1 3.5062 0.5167 5.5973 39 1 2.2176 -1.8694 6.3867 40 1 3.1755 -1.7052 10.8998 41 1 4.8654 -1.4507 11.3972 42 1 4.1420 -0.4173 10.1411 43 1 5.0095 -4.5210 9.2971 44 1 5.3726 -3.8472 10.9038 45 1 3.6824 -4.1023 10.4068 46 1 6.0048 -1.0060 8.5835 47 1 6.7284 -2.0396 9.8394 48 1 6.3654 -2.7134 8.2326 49 1 0.4361 2.3594 5.8781 50 1 0.0139 3.1185 4.3247 51 1 -0.7523 1.5845 4.8030 52 1 1.0703 1.7177 2.0043 53 1 -0.1842 0.6625 2.7215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870373514.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:56 Heat of formation + Delta-G solvation = -152.470579 kcal Electronic energy + Delta-G solvation = -30657.961095 eV Core-core repulsion = 26528.387216 eV Total energy + Delta-G solvation = -4129.573879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83743 -41.16592 -39.23212 -38.18063 -36.03364 -35.78746 -34.94265 -33.77120 -32.56794 -31.03592 -28.34727 -28.28361 -27.43881 -27.39264 -26.94494 -24.52262 -23.40202 -22.22311 -21.59751 -20.77257 -20.27325 -19.16281 -18.42196 -17.70943 -17.50701 -17.39660 -17.10321 -16.64117 -16.20523 -16.10272 -15.60247 -15.51076 -15.07304 -15.04874 -14.62639 -14.47287 -14.29477 -14.09025 -13.89050 -13.46012 -13.35401 -13.29339 -13.21693 -13.02915 -12.94728 -12.89489 -12.84890 -12.71607 -12.53197 -12.45630 -12.44474 -12.31966 -12.21783 -12.06518 -11.88733 -11.66551 -11.57901 -11.37572 -11.09373 -11.01998 -10.62724 -10.32643 -10.22116 -9.56270 -8.16829 -6.27102 1.17547 1.37678 1.39500 1.53077 1.76760 1.87142 2.14579 2.45129 3.10575 3.12317 3.45561 3.46200 3.65576 3.76671 3.81629 3.96403 4.16774 4.20081 4.25888 4.32872 4.49645 4.53293 4.62154 4.63413 4.67740 4.69492 4.74438 4.78123 4.78226 4.81668 4.87081 4.89248 4.90077 4.97403 5.02693 5.04220 5.11490 5.15537 5.24997 5.29693 5.34682 5.37541 5.42955 5.51571 5.54791 5.59262 5.72520 5.95281 6.20578 6.38036 6.62574 6.81864 7.33439 7.37633 7.46588 8.89114 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002192 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.440002 B =12771.567972 C =13902.258624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.032 3.968 3 H 0.038 0.962 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.531 3.469 13 O -0.592 6.592 14 N -0.625 5.625 15 C 0.105 3.895 16 C -0.089 4.089 17 H 0.120 0.880 18 C 0.156 3.844 19 N -0.703 5.703 20 C 0.645 3.355 21 O -0.592 6.592 22 O -0.372 6.372 23 C 0.124 3.876 24 C -0.177 4.177 25 C -0.137 4.137 26 C -0.181 4.181 27 C -0.085 4.085 28 H 0.088 0.912 29 C -0.136 4.136 30 C 0.100 3.900 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.018 0.982 34 H 0.265 0.735 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.072 0.928 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -0.345 28.094 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.322 3.678 13 O -0.472 6.472 14 N -0.360 5.360 15 C -0.017 4.017 16 C -0.108 4.108 17 H 0.138 0.862 18 C 0.033 3.967 19 N -0.363 5.363 20 C 0.398 3.602 21 O -0.483 6.483 22 O -0.286 6.286 23 C 0.088 3.912 24 C -0.234 4.234 25 C -0.194 4.194 26 C -0.239 4.239 27 C -0.105 4.105 28 H 0.106 0.894 29 C -0.193 4.193 30 C -0.022 4.022 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.091 0.909 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.005 -0.345 28.060 28.062 hybrid contribution 0.468 -0.822 -1.494 1.769 sum 0.464 -1.167 26.565 26.595 Atomic orbital electron populations 1.21665 0.94839 0.99315 1.02179 1.18724 0.95556 0.95521 0.89085 0.94444 1.21304 1.31617 1.12698 0.91239 0.93706 1.25586 0.95195 0.95789 1.01345 1.69946 1.37116 1.23421 1.24287 0.85549 0.78405 0.78552 0.79407 1.20684 1.19708 1.19867 1.21429 0.78195 0.83602 0.84545 1.90505 1.40551 1.29132 1.87010 1.48603 1.52221 1.30524 1.04611 1.22063 0.98964 0.97598 0.83119 1.22491 0.99637 0.96345 0.92341 0.86196 1.21321 0.98783 0.83612 0.92951 1.44769 1.45399 1.14888 1.31274 1.18258 0.79717 0.81834 0.80355 1.90894 1.50239 1.38911 1.68274 1.86321 1.62865 1.33080 1.46353 1.22412 0.87195 0.98694 0.82911 1.22452 1.02484 0.99959 0.98543 1.21890 1.04106 0.91805 1.01569 1.22487 0.95767 1.02711 1.02895 1.22378 1.01132 0.94754 0.92231 0.89392 1.21710 0.96696 1.00104 1.00821 1.22747 0.95213 0.86827 0.97461 0.92131 0.91055 0.96271 0.92527 0.93402 0.92019 0.88982 0.92245 0.74859 0.91702 0.89160 0.91807 0.91642 0.87934 0.90981 0.91925 0.89026 0.92522 0.90558 0.91448 0.91273 0.90931 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.78 71.98 0.63 -4.96 16 2 C 0.03 1.66 1.99 -12.28 -0.02 1.63 16 3 H 0.04 2.01 7.85 -2.39 -0.02 1.99 16 4 C -0.53 -31.44 8.37 25.60 0.21 -31.22 16 5 H 0.04 2.87 6.75 -2.91 -0.02 2.85 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.11 11.32 21.45 0.24 -50.87 16 8 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 9 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.53 25.46 7.21 87.66 0.63 26.09 16 13 O -0.59 -33.18 15.79 -3.02 -0.05 -33.23 16 14 N -0.63 -21.92 3.32 -811.41 -2.70 -24.61 16 15 C 0.11 2.90 6.27 86.73 0.54 3.44 16 16 C -0.09 -1.51 2.45 -9.61 -0.02 -1.54 16 17 H 0.12 1.52 8.04 -2.39 -0.02 1.50 16 18 C 0.16 2.68 5.00 86.38 0.43 3.12 16 19 N -0.70 -13.00 5.43 -590.85 -3.21 -16.21 16 20 C 0.65 14.87 8.06 129.79 1.05 15.92 16 21 O -0.59 -16.23 11.88 19.81 0.24 -15.99 16 22 O -0.37 -7.86 9.94 -55.42 -0.55 -8.41 16 23 C 0.12 2.09 1.13 -10.79 -0.01 2.08 16 24 C -0.18 -2.75 8.37 71.98 0.60 -2.15 16 25 C -0.14 -1.51 8.85 71.98 0.64 -0.87 16 26 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 27 C -0.09 -1.48 3.09 -9.34 -0.03 -1.51 16 28 H 0.09 1.60 8.05 -2.38 -0.02 1.58 16 29 C -0.14 -1.57 9.32 71.98 0.67 -0.90 16 30 C 0.10 2.57 4.62 86.92 0.40 2.97 16 31 H 0.06 2.21 4.99 -2.38 -0.01 2.19 16 32 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.05 1.48 7.73 -2.39 -0.02 1.46 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.06 1.25 8.00 -2.38 -0.02 1.23 16 39 H 0.42 6.34 8.51 -92.71 -0.79 5.55 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.33 5.89 -2.39 -0.01 1.32 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 1.46 5.87 -2.38 -0.01 1.45 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 52 H 0.07 2.06 7.36 -2.39 -0.02 2.04 16 53 H 0.08 1.96 6.92 -2.38 -0.02 1.94 16 Total: -1.00 -75.96 411.84 2.88 -73.09 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.11 Total: 17.62 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.77 Total: 11.07 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -5.66 Total: -91.68 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.36 Total: -57.63 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.96 2.88 -73.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870373514.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.385 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds