Wall clock time and date at job start Tue Mar 31 2020 23:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00053 * 2 1 4 4 O 1.20831 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00259 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46888 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46955 * 179.97438 * 6 5 3 8 8 C 1.36938 * 119.99975 * 272.13925 * 7 6 5 9 9 H 1.08008 * 120.00324 * 8.56581 * 8 7 6 10 10 C 1.38813 * 120.00123 * 188.56401 * 8 7 6 11 11 N 1.31621 * 119.99942 * 24.83020 * 10 8 7 12 12 Si 1.86796 * 120.00291 * 204.82679 * 10 8 7 13 13 H 1.48500 * 109.47362 * 59.99940 * 12 10 8 14 14 H 1.48499 * 109.47530 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47275 * 300.00257 * 12 10 8 16 16 C 1.46492 * 120.00058 * 92.13726 * 7 6 5 17 17 C 1.50696 * 109.47323 * 90.00283 * 16 7 6 18 18 O 1.21283 * 119.99872 * 359.97438 * 17 16 7 19 19 N 1.34781 * 120.00307 * 179.97438 * 17 16 7 20 20 C 1.46501 * 119.99949 * 359.97438 * 19 17 16 21 21 C 1.46499 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.08996 * 109.47417 * 359.97438 * 21 19 17 23 23 C 1.53003 * 109.46938 * 120.00353 * 21 19 17 24 24 C 1.53006 * 109.47057 * 179.97438 * 23 21 19 25 25 C 1.53005 * 109.46970 * 299.99919 * 24 23 21 26 26 C 1.53001 * 109.47424 * 59.99872 * 25 24 23 27 27 C 1.52997 * 109.46981 * 239.99960 * 21 19 17 28 28 H 1.09003 * 109.47382 * 300.00201 * 27 21 19 29 29 C 1.53001 * 109.47224 * 60.00134 * 27 21 19 30 30 H 1.08995 * 109.47211 * 60.00223 * 1 2 3 31 31 H 1.09008 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47570 * 299.99952 * 1 2 3 33 33 H 1.08999 * 109.46698 * 59.99803 * 5 3 2 34 34 H 1.08995 * 109.46958 * 299.99595 * 5 3 2 35 35 H 1.09000 * 109.47333 * 59.99979 * 6 5 3 36 36 H 1.08995 * 109.47266 * 299.99744 * 6 5 3 37 37 H 0.96995 * 120.00206 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.47374 * 329.99868 * 16 7 6 39 39 H 1.09004 * 109.47126 * 209.99934 * 16 7 6 40 40 H 1.08993 * 109.47006 * 270.00181 * 20 19 17 41 41 H 1.09004 * 109.46946 * 29.99867 * 20 19 17 42 42 H 1.09001 * 109.46988 * 149.99706 * 20 19 17 43 43 H 1.08993 * 109.47308 * 59.99768 * 23 21 19 44 44 H 1.08997 * 109.46778 * 299.99130 * 23 21 19 45 45 H 1.08996 * 109.47100 * 179.97438 * 24 23 21 46 46 H 1.09005 * 109.47234 * 59.99365 * 24 23 21 47 47 H 1.08990 * 109.47069 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.46691 * 299.99780 * 25 24 23 49 49 H 1.09003 * 109.46887 * 59.99897 * 26 25 24 50 50 H 1.08991 * 109.47259 * 180.02562 * 26 25 24 51 51 H 1.09005 * 109.47262 * 60.00124 * 29 27 21 52 52 H 1.09001 * 109.47155 * 179.97438 * 29 27 21 53 53 H 1.08990 * 109.47425 * 300.00173 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4630 2.8189 -0.0011 8 6 6.1490 2.8110 1.1841 9 1 5.6278 2.6098 2.1085 10 6 7.5142 3.0615 1.1975 11 7 8.0642 3.7628 0.2289 12 14 8.5710 2.4035 2.5902 13 1 8.4779 0.9218 2.6248 14 1 9.9837 2.8061 2.3725 15 1 8.0915 2.9599 3.8809 16 6 6.1920 2.9040 -1.2688 17 6 6.3677 4.3511 -1.6511 18 8 5.9269 5.2252 -0.9352 19 7 7.0148 4.6739 -2.7885 20 6 7.5478 3.6181 -3.6529 21 6 7.1850 6.0807 -3.1603 22 1 6.7262 6.7150 -2.4020 23 6 8.6770 6.4043 -3.2621 24 6 8.8548 7.8733 -3.6511 25 6 8.1844 8.1278 -5.0026 26 6 6.6924 7.8042 -4.9009 27 6 6.5145 6.3357 -4.5116 28 1 6.9730 5.7013 -5.2703 29 6 5.0226 6.0121 -4.4099 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9556 0.7809 -0.8908 34 1 3.9563 0.7807 0.8891 35 1 3.6106 3.2365 0.8889 36 1 3.6100 3.2360 -0.8910 37 1 9.0181 3.9381 0.2384 38 1 5.6293 2.3884 -2.0470 39 1 7.1703 2.4363 -1.1575 40 1 8.5694 3.3844 -3.3533 41 1 6.9289 2.7256 -3.5602 42 1 7.5416 3.9586 -4.6884 43 1 9.1354 5.7699 -4.0207 44 1 9.1546 6.2226 -2.2994 45 1 9.9177 8.1040 -3.7232 46 1 8.3962 8.5081 -2.8928 47 1 8.3114 9.1742 -5.2799 48 1 8.6430 7.4931 -5.7609 49 1 6.2339 8.4389 -4.1426 50 1 6.2149 7.9851 -5.8638 51 1 4.5641 6.6465 -3.6513 52 1 4.5448 6.1943 -5.3725 53 1 4.8959 4.9655 -4.1332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474328.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:10 Heat of formation + Delta-G solvation = -124.573434 kcal Electronic energy + Delta-G solvation = -31983.026341 eV Core-core repulsion = 27854.662173 eV Total energy + Delta-G solvation = -4128.364168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.44583 -40.94576 -39.08739 -37.70809 -37.00658 -35.52170 -33.95707 -33.39221 -31.83779 -30.94194 -28.81088 -28.32391 -27.61283 -26.81016 -26.00522 -23.68972 -22.85593 -22.13236 -21.45341 -20.57983 -19.96698 -18.77274 -18.41217 -17.68540 -17.54244 -17.24844 -16.90281 -16.79250 -15.99326 -15.63186 -15.48683 -15.38111 -15.16272 -14.91097 -14.65394 -14.39589 -14.12433 -13.89269 -13.73970 -13.63914 -13.51198 -13.31425 -13.22554 -13.10197 -12.93103 -12.77223 -12.74576 -12.69269 -12.43971 -12.32297 -12.05589 -11.99883 -11.84275 -11.82461 -11.75549 -11.70291 -11.52270 -11.32717 -11.16692 -11.06960 -10.68675 -10.09882 -9.08471 -8.88001 -7.84396 -5.13161 1.21258 1.50287 1.51530 1.58481 1.79751 2.44287 2.52238 2.70920 3.30686 3.59691 3.70864 3.87945 3.97470 4.02333 4.17409 4.20643 4.26253 4.32077 4.35266 4.35589 4.37204 4.49293 4.53416 4.58525 4.61689 4.65531 4.68738 4.73443 4.78017 4.83654 4.86152 4.94100 4.97184 5.01924 5.05613 5.12890 5.18616 5.19617 5.27629 5.30035 5.32276 5.33037 5.39423 5.43958 5.51163 5.61868 5.68924 6.15167 6.26932 6.77521 6.95279 7.17579 7.81148 8.09961 8.26679 9.21459 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009395 B = 0.003878 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.661896 B = 7219.109160 C = 9594.347600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.544 6.544 5 C -0.118 4.118 6 C 0.172 3.828 7 N -0.585 5.585 8 C -0.262 4.262 9 H 0.073 0.927 10 C -0.043 4.043 11 N -0.909 5.909 12 Si 0.962 3.038 13 H -0.271 1.271 14 H -0.299 1.299 15 H -0.292 1.292 16 C 0.167 3.833 17 C 0.532 3.468 18 O -0.590 6.590 19 N -0.622 5.622 20 C 0.087 3.913 21 C 0.152 3.848 22 H 0.042 0.958 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.110 4.110 27 C -0.089 4.089 28 H 0.091 0.909 29 C -0.135 4.135 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.025 0.975 52 H 0.075 0.925 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -3.198 -14.553 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.435 6.435 5 C -0.157 4.157 6 C 0.044 3.956 7 N -0.304 5.304 8 C -0.392 4.392 9 H 0.091 0.909 10 C -0.238 4.238 11 N -0.554 5.554 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.226 1.226 15 H -0.219 1.219 16 C 0.037 3.963 17 C 0.321 3.679 18 O -0.469 6.469 19 N -0.356 5.356 20 C -0.056 4.056 21 C 0.048 3.952 22 H 0.061 0.939 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.108 4.108 28 H 0.109 0.891 29 C -0.193 4.193 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.104 0.896 51 H 0.044 0.956 52 H 0.094 0.906 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.780 -2.444 -14.144 14.843 hybrid contribution 0.514 0.279 1.544 1.651 sum -3.267 -2.165 -12.599 13.195 Atomic orbital electron populations 1.23539 0.75116 1.05664 1.02338 1.86529 1.24870 1.32768 1.83796 1.24171 0.92518 0.81036 0.70748 1.90641 1.68088 1.37577 1.47154 1.22008 0.85349 1.01480 1.06914 1.20353 0.83542 0.92412 0.99244 1.44081 1.00421 1.83456 1.02473 1.19389 0.90868 1.41788 0.87114 0.90941 1.25339 0.98554 0.99506 1.00450 1.70103 1.10385 1.38769 1.36169 0.85428 0.77379 0.78965 0.79074 1.19699 1.22599 1.21862 1.20784 0.97973 0.91146 0.86382 1.22008 0.74525 0.93394 0.77938 1.90467 1.52539 1.52226 1.51621 1.47981 1.58080 1.06200 1.23380 1.21708 0.98630 0.90573 0.94668 1.20831 0.95390 0.83023 0.95987 0.93944 1.21754 0.95479 0.97808 1.00397 1.21506 1.01166 0.94671 0.97949 1.21510 0.94624 1.02274 0.96327 1.21562 0.97167 0.94326 1.01700 1.21403 0.95432 0.98002 0.95992 0.89132 1.21681 0.96001 1.00429 1.01141 0.92030 0.84757 0.92390 0.86140 0.87013 0.95321 0.94524 0.94619 0.91464 0.89225 0.93966 0.90861 0.89330 0.90360 0.95304 0.90717 0.93901 0.90510 0.90384 0.93692 0.89650 0.95608 0.90629 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.77 10.56 -51.40 -0.54 -10.32 16 3 C 0.47 15.39 7.96 71.24 0.57 15.95 16 4 O -0.54 -21.20 15.73 21.95 0.35 -20.86 16 5 C -0.12 -3.91 6.13 29.85 0.18 -3.73 16 6 C 0.17 7.48 4.96 86.38 0.43 7.91 16 7 N -0.58 -28.85 2.02 -706.36 -1.43 -30.28 16 8 C -0.26 -14.26 9.70 84.03 0.82 -13.45 16 9 H 0.07 3.91 7.94 -2.91 -0.02 3.89 16 10 C -0.04 -2.34 4.90 84.86 0.42 -1.92 16 11 N -0.91 -51.43 8.96 21.65 0.19 -51.24 16 12 Si 0.96 44.78 29.62 68.60 2.03 46.81 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 C 0.17 7.54 3.97 85.63 0.34 7.88 16 17 C 0.53 25.54 5.74 87.66 0.50 26.04 16 18 O -0.59 -34.86 15.49 -3.04 -0.05 -34.91 16 19 N -0.62 -23.45 2.00 -822.60 -1.64 -25.10 16 20 C 0.09 2.43 9.30 127.77 1.19 3.62 16 21 C 0.15 5.29 1.97 44.99 0.09 5.38 16 22 H 0.04 1.91 6.90 -2.39 -0.02 1.89 16 23 C -0.12 -3.57 5.21 30.60 0.16 -3.41 16 24 C -0.11 -2.85 5.92 30.60 0.18 -2.67 16 25 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 26 C -0.11 -2.36 5.20 30.58 0.16 -2.21 16 27 C -0.09 -2.29 2.08 -10.81 -0.02 -2.32 16 28 H 0.09 1.94 6.66 -2.39 -0.02 1.93 16 29 C -0.14 -3.79 9.04 71.98 0.65 -3.14 16 30 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 33 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.03 1.38 8.01 -2.39 -0.02 1.36 16 36 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 37 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 38 H 0.07 2.52 7.33 -2.39 -0.02 2.50 16 39 H 0.09 4.33 6.26 -2.38 -0.01 4.31 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.89 6.44 -2.38 -0.02 1.88 16 42 H 0.09 1.86 6.43 -2.39 -0.02 1.84 16 43 H 0.08 2.05 7.67 -2.39 -0.02 2.03 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.04 1.25 7.60 -2.39 -0.02 1.23 16 Total: -1.00 -75.69 413.95 6.81 -68.88 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.87 Total: 23.23 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 7.03 Total: 33.77 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -2.87 Total: -106.61 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -0.24 Total: -66.08 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.69 6.81 -68.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474328.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.694 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds