Wall clock time and date at job start Tue Mar 31 2020 23:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99512 * 2 1 4 4 O 1.20827 * 120.00574 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99811 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47046 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47094 * 180.02562 * 6 5 3 8 8 C 1.36934 * 120.00023 * 266.71978 * 7 6 5 9 9 H 1.08005 * 119.99603 * 6.07286 * 8 7 6 10 10 C 1.38807 * 120.00078 * 186.07385 * 8 7 6 11 11 N 1.31615 * 120.00199 * 28.61370 * 10 8 7 12 12 Si 1.86803 * 119.99964 * 208.60906 * 10 8 7 13 13 H 1.48504 * 109.47014 * 90.00311 * 12 10 8 14 14 H 1.48495 * 109.47109 * 210.00404 * 12 10 8 15 15 H 1.48498 * 109.47008 * 330.00085 * 12 10 8 16 16 C 1.46498 * 119.99920 * 86.71845 * 7 6 5 17 17 C 1.50700 * 109.47052 * 90.00325 * 16 7 6 18 18 O 1.21277 * 120.00144 * 359.97438 * 17 16 7 19 19 N 1.34774 * 119.99567 * 180.02562 * 17 16 7 20 20 C 1.46500 * 120.00480 * 359.97438 * 19 17 16 21 21 C 1.46506 * 119.99639 * 180.02562 * 19 17 16 22 22 H 1.08991 * 109.47351 * 46.87424 * 21 19 17 23 23 C 1.53003 * 109.46871 * 286.87265 * 21 19 17 24 24 C 1.52998 * 109.47603 * 300.00522 * 23 21 19 25 25 C 1.53001 * 109.46880 * 300.00059 * 24 23 21 26 26 C 1.53002 * 109.47424 * 59.99633 * 25 24 23 27 27 C 1.52998 * 109.47257 * 166.87698 * 21 19 17 28 28 H 1.08995 * 109.47619 * 179.97438 * 27 21 19 29 29 C 1.53001 * 109.47155 * 300.00182 * 27 21 19 30 30 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47307 * 299.99700 * 1 2 3 32 32 H 1.09001 * 109.47428 * 59.99968 * 1 2 3 33 33 H 1.09003 * 109.46738 * 60.00597 * 5 3 2 34 34 H 1.08995 * 109.47425 * 300.00423 * 5 3 2 35 35 H 1.08994 * 109.47357 * 60.00399 * 6 5 3 36 36 H 1.09002 * 109.47073 * 299.99916 * 6 5 3 37 37 H 0.96999 * 120.00567 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.47228 * 329.99756 * 16 7 6 39 39 H 1.09009 * 109.46849 * 210.00235 * 16 7 6 40 40 H 1.08996 * 109.47033 * 95.82334 * 20 19 17 41 41 H 1.09003 * 109.47253 * 215.82700 * 20 19 17 42 42 H 1.09001 * 109.46835 * 335.82283 * 20 19 17 43 43 H 1.09008 * 109.46885 * 60.00508 * 23 21 19 44 44 H 1.09003 * 109.46882 * 179.97438 * 23 21 19 45 45 H 1.08999 * 109.47272 * 59.99312 * 24 23 21 46 46 H 1.08997 * 109.47376 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.47708 * 180.02562 * 25 24 23 48 48 H 1.09007 * 109.47128 * 299.99985 * 25 24 23 49 49 H 1.08991 * 109.47011 * 60.00245 * 26 25 24 50 50 H 1.09006 * 109.46941 * 180.02562 * 26 25 24 51 51 H 1.08997 * 109.47056 * 36.03312 * 29 27 21 52 52 H 1.08999 * 109.47440 * 156.03603 * 29 27 21 53 53 H 1.09000 * 109.46409 * 276.03173 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4630 2.8190 0.0011 8 6 6.1433 2.9222 1.1850 9 1 5.6109 2.8484 2.1218 10 6 7.5170 3.1216 1.1811 11 7 8.0876 3.7523 0.1766 12 14 8.5558 2.4950 2.6016 13 1 9.0062 1.1098 2.3121 14 1 9.7396 3.3745 2.7747 15 1 7.7472 2.5025 3.8471 16 6 6.1983 2.7853 -1.2656 17 6 6.3761 4.1903 -1.7807 18 8 5.9320 5.1275 -1.1519 19 7 7.0277 4.4053 -2.9407 20 6 7.5637 3.2732 -3.7006 21 6 7.2011 5.7712 -3.4412 22 1 7.5477 6.4135 -2.6317 23 6 5.8641 6.2940 -3.9704 24 6 5.3775 5.3923 -5.1066 25 6 6.4091 5.3943 -6.2366 26 6 7.7462 4.8716 -5.7075 27 6 8.2327 5.7733 -4.5711 28 1 8.3614 6.7895 -4.9438 29 6 9.5697 5.2504 -4.0421 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.9563 0.7808 -0.8892 34 1 3.9557 0.7810 0.8907 35 1 3.6100 3.2361 0.8910 36 1 3.6106 3.2365 -0.8889 37 1 9.0475 3.8913 0.1737 38 1 5.6391 2.1989 -1.9948 39 1 7.1759 2.3302 -1.1063 40 1 6.8500 2.9825 -4.4714 41 1 8.5053 3.5622 -4.1675 42 1 7.7347 2.4326 -3.0280 43 1 5.1291 6.2926 -3.1653 44 1 5.9930 7.3105 -4.3423 45 1 5.2486 4.3761 -4.7343 46 1 4.4253 5.7650 -5.4839 47 1 6.0624 4.7524 -7.0463 48 1 6.5381 6.4107 -6.6090 49 1 7.6173 3.8554 -5.3351 50 1 8.4812 4.8735 -6.5125 51 1 9.3881 4.4614 -3.3124 52 1 10.1571 4.8522 -4.8693 53 1 10.1163 6.0654 -3.5676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474331.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:19 Heat of formation + Delta-G solvation = -79.586465 kcal Electronic energy + Delta-G solvation = -32489.338539 eV Core-core repulsion = 28362.925152 eV Total energy + Delta-G solvation = -4126.413387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.59590 -41.42191 -39.12657 -37.68345 -36.95229 -35.04248 -33.96145 -33.46938 -32.02482 -31.41763 -28.88769 -28.35787 -27.67350 -26.60133 -25.99764 -23.70353 -22.87054 -22.11295 -21.51382 -20.93758 -19.60974 -18.77661 -18.39174 -17.67735 -17.54822 -17.29988 -16.91566 -16.48403 -16.11800 -15.90809 -15.57460 -15.37351 -15.12407 -14.73768 -14.63509 -14.46932 -14.23979 -14.06087 -13.88778 -13.63872 -13.41704 -13.18870 -13.08814 -12.99495 -12.91485 -12.77917 -12.73009 -12.67577 -12.34986 -12.22400 -12.18850 -12.02529 -11.85670 -11.81322 -11.69513 -11.55420 -11.51916 -11.04507 -10.84532 -10.76504 -10.56391 -9.98588 -9.09823 -8.89185 -7.85664 -5.09943 1.21334 1.50501 1.53189 1.60320 1.79780 2.46531 2.52612 2.69831 3.27979 3.59661 3.74870 3.89243 3.94358 3.99563 4.17340 4.23137 4.28879 4.32410 4.35439 4.36340 4.43952 4.50779 4.56405 4.61473 4.62949 4.68395 4.70733 4.71700 4.74624 4.83231 4.86334 4.95172 4.97591 5.03116 5.10317 5.12527 5.19953 5.22327 5.27784 5.32242 5.38477 5.43193 5.43829 5.45765 5.53314 5.63417 5.71432 6.17340 6.27501 6.77555 6.96784 7.17866 7.81702 8.10359 8.27476 9.21076 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.004375 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.968339 B = 6398.030821 C = 8877.559427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.545 6.545 5 C -0.118 4.118 6 C 0.172 3.828 7 N -0.583 5.583 8 C -0.264 4.264 9 H 0.071 0.929 10 C -0.039 4.039 11 N -0.904 5.904 12 Si 0.957 3.043 13 H -0.277 1.277 14 H -0.307 1.307 15 H -0.281 1.281 16 C 0.164 3.836 17 C 0.529 3.471 18 O -0.587 6.587 19 N -0.611 5.611 20 C 0.055 3.945 21 C 0.161 3.839 22 H 0.022 0.978 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.108 4.108 26 C -0.157 4.157 27 C -0.085 4.085 28 H 0.082 0.918 29 C -0.157 4.157 30 H 0.135 0.865 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.081 0.919 51 H 0.057 0.943 52 H 0.082 0.918 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -6.839 -14.810 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.435 6.435 5 C -0.158 4.158 6 C 0.044 3.956 7 N -0.303 5.303 8 C -0.393 4.393 9 H 0.089 0.911 10 C -0.236 4.236 11 N -0.550 5.550 12 Si 0.787 3.213 13 H -0.203 1.203 14 H -0.235 1.235 15 H -0.207 1.207 16 C 0.035 3.965 17 C 0.317 3.683 18 O -0.465 6.465 19 N -0.347 5.347 20 C -0.086 4.086 21 C 0.057 3.943 22 H 0.040 0.960 23 C -0.163 4.163 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.193 4.193 27 C -0.104 4.104 28 H 0.100 0.900 29 C -0.214 4.214 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.126 0.874 50 H 0.100 0.900 51 H 0.076 0.924 52 H 0.101 0.899 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.453 -6.029 -14.454 16.037 hybrid contribution 0.364 0.744 1.469 1.687 sum -3.088 -5.284 -12.985 14.355 Atomic orbital electron populations 1.23540 0.75121 1.05667 1.02326 1.86530 1.24862 1.32751 1.83798 1.24171 0.92531 0.81035 0.70748 1.90642 1.68100 1.37597 1.47151 1.22015 0.85371 1.01444 1.06955 1.20348 0.83569 0.92438 0.99196 1.44112 1.00398 1.83245 1.02512 1.19406 0.90283 1.43804 0.85791 0.91104 1.25268 0.98158 0.99987 1.00148 1.70208 1.09501 1.40586 1.34684 0.85422 0.77935 0.78122 0.79822 1.20342 1.23473 1.20657 1.20834 0.97929 0.91577 0.86210 1.22039 0.74923 0.93430 0.77868 1.90476 1.52015 1.46520 1.57511 1.47873 1.57715 1.06290 1.22784 1.22748 1.00857 0.88679 0.96331 1.20695 0.95175 0.83864 0.94605 0.95986 1.21799 0.96963 0.99684 0.97879 1.21412 0.98763 0.99143 0.95308 1.21461 0.94588 1.01688 0.96770 1.22728 0.97160 1.02296 0.97139 1.21272 0.93560 1.01114 0.94471 0.89985 1.22096 0.96332 1.01224 1.01714 0.84739 0.92373 0.92078 0.86181 0.86819 0.94881 0.95091 0.94490 0.91493 0.89032 0.90951 0.87364 0.92208 0.95520 0.91098 0.92978 0.92228 0.90416 0.91960 0.87366 0.89996 0.92446 0.89885 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.71 10.57 -51.37 -0.54 -10.25 16 3 C 0.47 15.32 7.96 71.24 0.57 15.89 16 4 O -0.54 -21.22 15.73 21.96 0.35 -20.88 16 5 C -0.12 -3.89 6.14 29.85 0.18 -3.70 16 6 C 0.17 7.47 4.96 86.38 0.43 7.90 16 7 N -0.58 -28.57 2.02 -706.32 -1.43 -30.00 16 8 C -0.26 -14.30 9.66 84.03 0.81 -13.49 16 9 H 0.07 3.86 7.97 -2.91 -0.02 3.84 16 10 C -0.04 -2.14 4.83 84.86 0.41 -1.73 16 11 N -0.90 -50.56 9.21 21.65 0.20 -50.36 16 12 Si 0.96 44.30 29.64 68.60 2.03 46.33 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 C 0.16 7.33 3.91 85.63 0.34 7.67 16 17 C 0.53 25.05 5.61 87.66 0.49 25.55 16 18 O -0.59 -34.32 15.20 -3.02 -0.05 -34.36 16 19 N -0.61 -22.53 1.93 -852.41 -1.64 -24.17 16 20 C 0.06 1.49 7.00 127.77 0.89 2.39 16 21 C 0.16 5.61 2.18 44.99 0.10 5.70 16 22 H 0.02 0.97 7.95 -2.39 -0.02 0.95 16 23 C -0.12 -4.10 5.42 30.59 0.17 -3.93 16 24 C -0.11 -2.80 5.69 30.59 0.17 -2.62 16 25 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 26 C -0.16 -2.95 4.54 30.60 0.14 -2.81 16 27 C -0.09 -2.11 2.47 -10.79 -0.03 -2.14 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 C -0.16 -3.88 8.28 71.98 0.60 -3.28 16 30 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 33 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.03 1.57 7.97 -2.39 -0.02 1.55 16 36 H 0.03 1.40 8.05 -2.39 -0.02 1.38 16 37 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 38 H 0.07 2.49 8.04 -2.38 -0.02 2.47 16 39 H 0.09 4.34 5.53 -2.38 -0.01 4.33 16 40 H 0.07 1.59 5.93 -2.39 -0.01 1.58 16 41 H 0.11 2.50 3.08 -2.39 -0.01 2.49 16 42 H 0.06 1.72 6.24 -2.39 -0.01 1.70 16 43 H 0.03 1.10 7.18 -2.38 -0.02 1.08 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.46 6.56 -2.39 -0.02 1.44 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.11 2.04 2.81 -13.28 -0.04 2.00 16 50 H 0.08 1.19 8.12 -2.38 -0.02 1.17 16 51 H 0.06 1.71 5.31 -2.39 -0.01 1.70 16 52 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16 53 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.00 397.24 6.43 -68.57 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.87 Total: 23.88 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 6.65 Total: 31.24 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -2.87 Total: -104.54 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -0.24 Total: -65.49 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -75.00 6.43 -68.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474331.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.018 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds