Wall clock time and date at job start Tue Mar 31 2020 23:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99862 * 2 1 4 4 O 1.20833 * 120.00176 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00486 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47568 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47027 * 181.16998 * 6 5 3 8 8 C 1.36937 * 120.00061 * 92.21058 * 7 6 5 9 9 H 1.08000 * 120.00077 * 322.70618 * 8 7 6 10 10 C 1.38810 * 120.00287 * 142.70510 * 8 7 6 11 11 N 1.31618 * 120.00491 * 157.11534 * 10 8 7 12 12 Si 1.86803 * 120.00159 * 337.12169 * 10 8 7 13 13 H 1.48502 * 109.47377 * 95.39300 * 12 10 8 14 14 H 1.48500 * 109.47352 * 215.39686 * 12 10 8 15 15 H 1.48507 * 109.46751 * 335.39385 * 12 10 8 16 16 C 1.46499 * 120.00173 * 272.20568 * 7 6 5 17 17 C 1.50699 * 109.47018 * 90.00233 * 16 7 6 18 18 O 1.21277 * 120.00469 * 359.97438 * 17 16 7 19 19 N 1.34782 * 120.00084 * 180.02562 * 17 16 7 20 20 C 1.46501 * 120.00037 * 359.97438 * 19 17 16 21 21 C 1.46501 * 120.00188 * 180.02562 * 19 17 16 22 22 H 1.09002 * 109.47048 * 359.97438 * 21 19 17 23 23 C 1.52998 * 109.47115 * 239.99814 * 21 19 17 24 24 C 1.52997 * 109.47205 * 179.97438 * 23 21 19 25 25 C 1.52996 * 109.47133 * 59.99803 * 24 23 21 26 26 C 1.52998 * 109.47236 * 300.00178 * 25 24 23 27 27 C 1.52996 * 109.47363 * 119.99531 * 21 19 17 28 28 H 1.09002 * 109.47166 * 59.99916 * 27 21 19 29 29 C 1.52998 * 109.47236 * 300.00209 * 27 21 19 30 30 H 1.09000 * 109.47496 * 60.00154 * 1 2 3 31 31 H 1.09004 * 109.46879 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47590 * 300.00058 * 1 2 3 33 33 H 1.09002 * 109.46620 * 59.99744 * 5 3 2 34 34 H 1.09003 * 109.47092 * 300.00407 * 5 3 2 35 35 H 1.08995 * 109.47453 * 301.16854 * 6 5 3 36 36 H 1.09004 * 109.46762 * 61.17365 * 6 5 3 37 37 H 0.96996 * 120.01003 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.47434 * 210.00079 * 16 7 6 39 39 H 1.09005 * 109.47305 * 330.00238 * 16 7 6 40 40 H 1.09003 * 109.46734 * 90.00327 * 20 19 17 41 41 H 1.08991 * 109.47392 * 210.00353 * 20 19 17 42 42 H 1.08999 * 109.47121 * 330.00745 * 20 19 17 43 43 H 1.09002 * 109.46804 * 299.99711 * 23 21 19 44 44 H 1.09007 * 109.47295 * 59.99598 * 23 21 19 45 45 H 1.09002 * 109.47188 * 299.99702 * 24 23 21 46 46 H 1.09000 * 109.47100 * 179.97438 * 24 23 21 47 47 H 1.09005 * 109.47270 * 179.97438 * 25 24 23 48 48 H 1.09009 * 109.46915 * 60.00233 * 25 24 23 49 49 H 1.09000 * 109.46852 * 299.99395 * 26 25 24 50 50 H 1.09004 * 109.46816 * 179.97438 * 26 25 24 51 51 H 1.08998 * 109.47648 * 59.99904 * 29 27 21 52 52 H 1.09007 * 109.47295 * 180.02562 * 29 27 21 53 53 H 1.09002 * 109.46804 * 299.99929 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 7 5.4626 2.8190 -0.0278 8 6 6.1212 2.9067 -1.2252 9 1 5.7588 2.3583 -2.0822 10 6 7.2545 3.7003 -1.3377 11 7 8.1332 3.4621 -2.2882 12 14 7.5327 5.1064 -0.1398 13 1 8.4074 4.6466 0.9687 14 1 8.1838 6.2380 -0.8473 15 1 6.2279 5.5524 0.4116 16 6 6.2209 2.8021 1.2256 17 6 6.5541 1.3788 1.5919 18 8 6.1933 0.4682 0.8768 19 7 7.2522 1.1177 2.7149 20 6 7.6875 2.2177 3.5791 21 6 7.5766 -0.2659 3.0708 22 1 7.1734 -0.9396 2.3146 23 6 6.9615 -0.6002 4.4312 24 6 7.2998 -2.0453 4.8025 25 6 8.8190 -2.2110 4.8752 26 6 9.4341 -1.8767 3.5148 27 6 9.0959 -0.4310 3.1436 28 1 9.4988 0.2427 3.8999 29 6 9.7110 -0.0966 1.7832 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9562 0.7807 -0.8892 34 1 3.9556 0.7811 0.8908 35 1 3.5933 3.2409 -0.8799 36 1 3.6274 3.2317 0.8997 37 1 8.9253 4.0163 -2.3666 38 1 7.1426 3.3703 1.1004 39 1 5.6223 3.2508 2.0184 40 1 6.9176 2.4216 4.3233 41 1 8.6140 1.9401 4.0817 42 1 7.8548 3.1097 2.9755 43 1 7.3644 0.0735 5.1875 44 1 5.8790 -0.4826 4.3793 45 1 6.8966 -2.7188 4.0462 46 1 6.8619 -2.2834 5.7719 47 1 9.0600 -3.2405 5.1402 48 1 9.2222 -1.5376 5.6316 49 1 9.0310 -2.5501 2.7584 50 1 10.5165 -1.9943 3.5667 51 1 9.4697 0.9328 1.5183 52 1 10.7934 -0.2147 1.8349 53 1 9.3081 -0.7703 1.0269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474332.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:23 Heat of formation + Delta-G solvation = -126.377087 kcal Electronic energy + Delta-G solvation = -32258.973086 eV Core-core repulsion = 28130.530706 eV Total energy + Delta-G solvation = -4128.442380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.53102 -41.23930 -39.34918 -37.80585 -37.16446 -35.85867 -34.11102 -33.45124 -32.49177 -31.09732 -28.97660 -28.44045 -27.81772 -26.92260 -26.23111 -23.73515 -22.90209 -22.21167 -21.49726 -20.79617 -20.21448 -18.84325 -18.60012 -18.16304 -17.61978 -17.52477 -17.14751 -16.98620 -16.25342 -15.80597 -15.49477 -15.44291 -15.27808 -15.01673 -14.60521 -14.54918 -14.39886 -14.32315 -13.99651 -13.78689 -13.68953 -13.56545 -13.44077 -13.30558 -13.09091 -12.96151 -12.83827 -12.79838 -12.56746 -12.49268 -12.10602 -12.03393 -11.89582 -11.78577 -11.77310 -11.64168 -11.56381 -11.36955 -11.21448 -11.13065 -10.79615 -10.48216 -9.40198 -8.89325 -8.20055 -5.62067 1.14091 1.24969 1.43104 1.54222 1.76943 1.88094 2.14942 2.40436 3.02070 3.30043 3.61658 3.82031 3.92018 3.94283 4.00284 4.13162 4.20783 4.21966 4.23914 4.29443 4.30790 4.32696 4.37788 4.46003 4.51577 4.52176 4.55144 4.58309 4.66421 4.69286 4.72913 4.76823 4.84456 4.91123 4.93712 4.97624 5.09206 5.16876 5.17945 5.22631 5.27932 5.30543 5.35113 5.36864 5.44128 5.58052 5.79753 5.89951 6.16018 6.52520 6.70748 6.88116 7.42868 7.58460 7.93247 8.99426 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007809 B = 0.004874 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.638819 B = 5743.950372 C = 8363.485658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.371 6.371 3 C 0.473 3.527 4 O -0.534 6.534 5 C -0.114 4.114 6 C 0.166 3.834 7 N -0.587 5.587 8 C -0.258 4.258 9 H 0.031 0.969 10 C -0.020 4.020 11 N -0.944 5.944 12 Si 0.936 3.064 13 H -0.257 1.257 14 H -0.305 1.305 15 H -0.247 1.247 16 C 0.111 3.889 17 C 0.485 3.515 18 O -0.559 6.559 19 N -0.616 5.616 20 C 0.068 3.932 21 C 0.142 3.858 22 H 0.061 0.939 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.110 4.110 27 C -0.090 4.090 28 H 0.090 0.910 29 C -0.139 4.139 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.264 0.736 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.076 0.924 51 H 0.029 0.971 52 H 0.068 0.932 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -8.302 20.251 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.154 4.154 6 C 0.041 3.959 7 N -0.307 5.307 8 C -0.388 4.388 9 H 0.049 0.951 10 C -0.216 4.216 11 N -0.587 5.587 12 Si 0.762 3.238 13 H -0.184 1.184 14 H -0.234 1.234 15 H -0.170 1.170 16 C -0.018 4.018 17 C 0.272 3.728 18 O -0.436 6.436 19 N -0.351 5.351 20 C -0.074 4.074 21 C 0.039 3.961 22 H 0.079 0.921 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.109 4.109 28 H 0.108 0.892 29 C -0.197 4.197 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.087 0.913 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.704 -8.411 19.755 21.640 hybrid contribution 0.246 0.579 -0.759 0.986 sum -2.458 -7.831 18.996 20.693 Atomic orbital electron populations 1.23565 0.74813 1.05660 1.02635 1.86552 1.25229 1.33150 1.83763 1.24078 0.92212 0.81133 0.70859 1.90602 1.67798 1.36944 1.47033 1.21987 0.85429 1.02690 1.05315 1.20719 0.82143 0.91613 1.01466 1.43791 1.01206 1.84193 1.01486 1.18483 1.09154 1.22194 0.88940 0.95127 1.26102 0.96239 1.00191 0.99111 1.70040 1.10730 1.40002 1.37954 0.85974 0.79188 0.79659 0.78955 1.18384 1.23379 1.17035 1.21539 0.97864 0.92463 0.89885 1.22466 0.77163 0.93392 0.79791 1.90574 1.54025 1.48011 1.51027 1.48182 1.55273 1.07804 1.23820 1.21997 1.01815 0.88821 0.94758 1.21110 0.95058 0.82607 0.97324 0.92110 1.21799 1.00016 0.98158 0.95458 1.21504 0.96835 0.95109 1.01853 1.21526 0.94642 1.02369 0.96476 1.21572 1.01277 0.94185 0.97775 1.21433 0.94002 0.98606 0.96896 0.89177 1.21709 1.00798 0.99922 0.97249 0.92079 0.85066 0.91546 0.89873 0.88023 0.92657 0.91239 0.92725 0.91031 0.87489 0.90125 0.89053 0.92151 0.89807 0.92854 0.93163 0.90030 0.90703 0.90557 0.93294 0.90538 0.95223 0.91327 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -11.58 10.57 -51.41 -0.54 -12.13 16 3 C 0.47 16.93 7.96 71.23 0.57 17.49 16 4 O -0.53 -20.54 15.73 21.94 0.35 -20.20 16 5 C -0.11 -4.49 5.26 29.85 0.16 -4.33 16 6 C 0.17 6.96 5.01 86.38 0.43 7.39 16 7 N -0.59 -27.93 1.64 -706.35 -1.16 -29.09 16 8 C -0.26 -14.95 9.90 84.03 0.83 -14.11 16 9 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 10 C -0.02 -1.15 5.30 84.86 0.45 -0.70 16 11 N -0.94 -59.34 13.97 21.65 0.30 -59.04 16 12 Si 0.94 43.24 25.07 68.60 1.72 44.96 16 13 H -0.26 -10.62 6.66 99.48 0.66 -9.95 16 14 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 15 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 16 C 0.11 4.50 3.59 85.63 0.31 4.81 16 17 C 0.49 19.34 7.59 87.66 0.67 20.01 16 18 O -0.56 -26.66 13.36 -3.02 -0.04 -26.71 16 19 N -0.62 -18.52 2.00 -822.60 -1.64 -20.16 16 20 C 0.07 1.47 9.30 127.77 1.19 2.66 16 21 C 0.14 3.82 1.97 44.99 0.09 3.91 16 22 H 0.06 2.12 6.90 -2.39 -0.02 2.10 16 23 C -0.12 -2.28 5.20 30.59 0.16 -2.12 16 24 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 25 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 26 C -0.11 -2.06 5.21 30.61 0.16 -1.90 16 27 C -0.09 -2.07 2.09 -10.78 -0.02 -2.10 16 28 H 0.09 1.71 6.66 -2.39 -0.02 1.70 16 29 C -0.14 -4.19 9.04 71.98 0.65 -3.54 16 30 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.36 8.13 -2.38 -0.02 1.34 16 33 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.10 4.02 6.48 -2.39 -0.02 4.00 16 35 H 0.05 2.46 7.95 -2.39 -0.02 2.44 16 36 H 0.07 2.56 7.90 -2.39 -0.02 2.54 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.07 3.05 2.53 -2.39 -0.01 3.05 16 39 H 0.11 3.46 7.88 -2.38 -0.02 3.44 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.53 6.42 -2.39 -0.02 1.52 16 42 H 0.06 1.45 6.44 -2.39 -0.02 1.43 16 43 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 44 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 51 H 0.03 1.04 7.60 -2.39 -0.02 1.02 16 52 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 53 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -76.24 407.81 7.01 -69.24 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.83 Total: 26.99 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 7.19 Total: 26.13 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -2.50 Total: -108.28 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.24 Total: -59.03 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.72 Total: 44.96 kcal Total: -76.24 7.01 -69.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474332.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.139 kcal (2) G-P(sol) polarization free energy of solvation -76.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds