Wall clock time and date at job start Tue Mar 31 2020 23:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00311 * 2 1 4 4 O 1.20820 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00055 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47303 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47430 * 180.02562 * 6 5 3 8 8 C 1.36939 * 119.99803 * 269.99982 * 7 6 5 9 9 H 1.07998 * 119.99804 * 334.34035 * 8 7 6 10 10 C 1.38808 * 119.99581 * 154.33648 * 8 7 6 11 11 N 1.31618 * 120.00361 * 355.80984 * 10 8 7 12 12 Si 1.86808 * 119.99833 * 175.81374 * 10 8 7 13 13 H 1.48503 * 109.47202 * 89.99761 * 12 10 8 14 14 H 1.48495 * 109.46826 * 209.99834 * 12 10 8 15 15 H 1.48496 * 109.46646 * 329.99934 * 12 10 8 16 16 C 1.46495 * 119.99840 * 90.00226 * 7 6 5 17 17 C 1.50704 * 109.47036 * 275.77969 * 16 7 6 18 18 O 1.21282 * 119.99771 * 359.97438 * 17 16 7 19 19 N 1.34769 * 120.00283 * 180.02562 * 17 16 7 20 20 C 1.46498 * 120.00376 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.47186 * 34.99575 * 20 19 17 22 22 C 1.52994 * 109.47068 * 274.99687 * 20 19 17 23 23 C 1.52999 * 109.47361 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47269 * 59.99980 * 23 22 20 25 25 C 1.53003 * 109.46876 * 300.00400 * 24 23 22 26 26 H 1.09001 * 109.46958 * 299.99672 * 25 24 23 27 27 C 1.53006 * 109.46898 * 180.02562 * 25 24 23 28 28 C 1.52999 * 109.47169 * 154.99477 * 20 19 17 29 29 H 1.09001 * 109.47389 * 60.00638 * 28 20 19 30 30 C 1.52997 * 109.47587 * 299.99858 * 28 20 19 31 31 H 1.08996 * 109.47349 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47221 * 300.00188 * 1 2 3 33 33 H 1.08997 * 109.46605 * 59.99745 * 1 2 3 34 34 H 1.08999 * 109.46909 * 60.00471 * 5 3 2 35 35 H 1.09001 * 109.47363 * 300.00598 * 5 3 2 36 36 H 1.08999 * 109.47390 * 60.00027 * 6 5 3 37 37 H 1.09001 * 109.47422 * 300.00590 * 6 5 3 38 38 H 0.97000 * 120.00448 * 180.02562 * 11 10 8 39 39 H 1.08995 * 109.47174 * 155.78117 * 16 7 6 40 40 H 1.08994 * 109.47596 * 35.77782 * 16 7 6 41 41 H 0.97000 * 120.00157 * 359.97438 * 19 17 16 42 42 H 1.09003 * 109.47519 * 299.99809 * 22 20 19 43 43 H 1.09003 * 109.47392 * 59.99785 * 22 20 19 44 44 H 1.08998 * 109.47174 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.47072 * 299.99998 * 23 22 20 46 46 H 1.08999 * 109.47368 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47059 * 60.00010 * 24 23 22 48 48 H 1.09001 * 109.46875 * 299.99510 * 27 25 24 49 49 H 1.08992 * 109.47188 * 59.99921 * 27 25 24 50 50 H 1.09006 * 109.46298 * 179.97438 * 27 25 24 51 51 H 1.09000 * 109.46900 * 300.00600 * 30 28 20 52 52 H 1.09002 * 109.47030 * 59.99629 * 30 28 20 53 53 H 1.08994 * 109.47652 * 179.97438 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7418 -0.0002 7 7 5.4633 2.8185 -0.0002 8 6 6.1471 2.8549 1.1857 9 1 5.6663 3.2358 2.0746 10 6 7.4579 2.4023 1.2452 11 7 8.0165 1.8621 0.1828 12 14 8.4292 2.5596 2.8331 13 1 8.2326 1.3396 3.6566 14 1 9.8717 2.7166 2.5174 15 1 7.9553 3.7477 3.5874 16 6 6.1948 2.8562 -1.2690 17 6 6.3958 1.4509 -1.7749 18 8 5.9703 0.5105 -1.1380 19 7 7.0491 1.2391 -2.9344 20 6 7.2440 -0.1270 -3.4265 21 1 6.3757 -0.7334 -3.1688 22 6 8.4948 -0.7276 -2.7819 23 6 8.6981 -2.1545 -3.2953 24 6 8.8695 -2.1300 -4.8154 25 6 7.6186 -1.5293 -5.4600 26 1 6.7502 -2.1354 -5.2020 27 6 7.7897 -1.5054 -6.9803 28 6 7.4156 -0.1019 -4.9466 29 1 8.2840 0.5044 -5.2043 30 6 6.1648 0.4987 -5.5913 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 3.9564 0.7805 -0.8892 35 1 3.9558 0.7807 0.8908 36 1 3.6102 3.2366 0.8893 37 1 3.6109 3.2355 -0.8906 38 1 8.9324 1.5455 0.2245 39 1 7.1646 3.3292 -1.1153 40 1 5.6238 3.4275 -2.0008 41 1 7.3897 1.9911 -3.4436 42 1 9.3633 -0.1213 -3.0395 43 1 8.3726 -0.7455 -1.6989 44 1 9.5890 -2.5825 -2.8357 45 1 7.8297 -2.7606 -3.0373 46 1 9.0138 -3.1466 -5.1813 47 1 9.7379 -1.5239 -5.0735 48 1 8.6582 -0.8995 -7.2387 49 1 7.9342 -2.5221 -7.3457 50 1 6.8983 -1.0779 -7.4395 51 1 5.2964 -0.1076 -5.3335 52 1 6.0197 1.5151 -5.2251 53 1 6.2872 0.5170 -6.6742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474925.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:59 Heat of formation + Delta-G solvation = -138.716361 kcal Electronic energy + Delta-G solvation = -32075.003831 eV Core-core repulsion = 27946.026380 eV Total energy + Delta-G solvation = -4128.977451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.44444 -40.80840 -39.28739 -37.67801 -36.94345 -34.90353 -33.91209 -33.86548 -31.94402 -31.19595 -28.91596 -28.40222 -27.60719 -26.32621 -25.92750 -23.39625 -22.34434 -21.91062 -21.41803 -21.06548 -20.34492 -18.90755 -18.51775 -17.68347 -17.54612 -17.17141 -16.84917 -16.61692 -15.79278 -15.60309 -15.47190 -15.23400 -15.12970 -15.10768 -14.69009 -14.48054 -14.19061 -14.00365 -13.64853 -13.61018 -13.35127 -13.27951 -13.01103 -12.91223 -12.84382 -12.69747 -12.64709 -12.53530 -12.40546 -12.26744 -12.01359 -11.94593 -11.83547 -11.79731 -11.71611 -11.59106 -11.43236 -11.28524 -11.13380 -10.86899 -10.72187 -10.04740 -9.41424 -8.69273 -7.83393 -5.27371 1.19595 1.46964 1.50470 1.56878 1.85397 2.48948 2.59881 2.87611 3.39465 3.65255 3.74626 3.86304 3.98068 4.09171 4.17935 4.26283 4.26693 4.31290 4.33570 4.41761 4.47800 4.53036 4.60557 4.62844 4.67425 4.68704 4.76632 4.81665 4.82297 4.92935 5.03004 5.04497 5.06457 5.07632 5.15034 5.20980 5.24138 5.25332 5.32522 5.37582 5.40954 5.41880 5.47200 5.52489 5.59561 5.67583 5.69172 6.17193 6.36541 6.76817 7.09897 7.28648 7.82251 8.18918 8.30909 9.21171 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007821 B = 0.004400 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3579.087413 B = 6362.690746 C = 8858.038179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.373 6.373 3 C 0.470 3.530 4 O -0.537 6.537 5 C -0.118 4.118 6 C 0.169 3.831 7 N -0.582 5.582 8 C -0.269 4.269 9 H 0.067 0.933 10 C -0.030 4.030 11 N -0.903 5.903 12 Si 0.963 3.037 13 H -0.299 1.299 14 H -0.292 1.292 15 H -0.272 1.272 16 C 0.163 3.837 17 C 0.533 3.467 18 O -0.570 6.570 19 N -0.732 5.732 20 C 0.166 3.834 21 H 0.045 0.955 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.106 4.106 25 C -0.082 4.082 26 H 0.061 0.939 27 C -0.141 4.141 28 C -0.082 4.082 29 H 0.080 0.920 30 C -0.142 4.142 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.245 0.755 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.397 0.603 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.041 0.959 52 H 0.052 0.948 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -5.505 -14.731 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.158 4.158 6 C 0.043 3.957 7 N -0.301 5.301 8 C -0.399 4.399 9 H 0.084 0.916 10 C -0.227 4.227 11 N -0.548 5.548 12 Si 0.793 3.207 13 H -0.227 1.227 14 H -0.219 1.219 15 H -0.197 1.197 16 C 0.033 3.967 17 C 0.320 3.680 18 O -0.448 6.448 19 N -0.384 5.384 20 C 0.060 3.940 21 H 0.064 0.936 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.101 4.101 26 H 0.079 0.921 27 C -0.199 4.199 28 C -0.101 4.101 29 H 0.099 0.901 30 C -0.200 4.200 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.232 0.768 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.060 0.940 52 H 0.071 0.929 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.959 -5.893 -14.243 15.696 hybrid contribution 0.719 0.072 1.359 1.539 sum -2.240 -5.821 -12.884 14.314 Atomic orbital electron populations 1.23546 0.75060 1.05551 1.02568 1.86576 1.25113 1.33492 1.83791 1.24403 0.92499 0.81004 0.70599 1.90569 1.67871 1.36926 1.47364 1.22304 0.84595 1.03514 1.05386 1.20702 0.83682 0.91123 1.00243 1.43913 1.00421 1.83620 1.02190 1.19369 0.95720 1.35611 0.89183 0.91557 1.25591 0.99368 0.98205 0.99548 1.69819 1.13024 1.43497 1.28467 0.85354 0.77711 0.77266 0.80411 1.22695 1.21853 1.19705 1.20591 0.97851 0.91942 0.86285 1.21705 0.74841 0.93245 0.78160 1.90427 1.52318 1.45756 1.56338 1.45993 1.60191 1.07911 1.24337 1.20660 0.96048 0.83705 0.93557 0.93646 1.21745 0.98200 0.96843 0.98732 1.21475 1.01117 0.95416 0.97150 1.21577 0.97981 1.01521 0.93295 1.21114 0.97990 0.94630 0.96392 0.92096 1.21829 1.02294 1.02268 0.93466 1.21356 0.99399 0.97553 0.91747 0.90133 1.21828 0.96483 1.00495 1.01146 0.85193 0.91967 0.91739 0.87992 0.90243 0.93336 0.92421 0.94494 0.89428 0.92295 0.76849 0.92427 0.95787 0.91988 0.93190 0.90632 0.91364 0.92112 0.91989 0.91867 0.93997 0.92858 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.37 -12.65 10.56 -51.36 -0.54 -13.20 16 3 C 0.47 18.07 7.96 71.24 0.57 18.64 16 4 O -0.54 -21.70 15.73 21.98 0.35 -21.35 16 5 C -0.12 -5.02 5.27 29.85 0.16 -4.87 16 6 C 0.17 7.39 4.99 86.38 0.43 7.83 16 7 N -0.58 -28.43 2.16 -706.36 -1.53 -29.96 16 8 C -0.27 -14.43 9.66 84.03 0.81 -13.62 16 9 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 10 C -0.03 -1.62 5.21 84.86 0.44 -1.18 16 11 N -0.90 -49.08 8.62 21.65 0.19 -48.89 16 12 Si 0.96 44.87 29.56 68.60 2.03 46.89 16 13 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 16 C 0.16 7.22 5.41 85.64 0.46 7.68 16 17 C 0.53 23.45 5.74 87.66 0.50 23.95 16 18 O -0.57 -29.55 12.52 -3.03 -0.04 -29.59 16 19 N -0.73 -25.39 4.38 -442.55 -1.94 -27.33 16 20 C 0.17 5.25 1.90 44.99 0.09 5.34 16 21 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 22 C -0.12 -3.89 5.49 30.59 0.17 -3.72 16 23 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 24 C -0.11 -2.10 5.20 30.59 0.16 -1.94 16 25 C -0.08 -1.59 2.25 -10.77 -0.02 -1.62 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 27 C -0.14 -2.03 8.84 71.98 0.64 -1.39 16 28 C -0.08 -1.82 1.83 -10.78 -0.02 -1.84 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 30 C -0.14 -2.93 8.68 71.98 0.62 -2.31 16 31 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 33 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.10 4.66 5.74 -2.39 -0.01 4.65 16 35 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.05 2.15 8.00 -2.39 -0.02 2.13 16 37 H 0.06 2.33 7.91 -2.39 -0.02 2.31 16 38 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 39 H 0.09 4.20 6.51 -2.39 -0.02 4.19 16 40 H 0.06 2.23 7.97 -2.39 -0.02 2.21 16 41 H 0.40 11.65 8.39 -92.71 -0.78 10.87 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 0.85 6.43 -2.38 -0.02 0.83 16 51 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.05 1.15 7.44 -2.39 -0.02 1.13 16 53 H 0.08 1.23 6.43 -2.39 -0.02 1.22 16 Total: -1.00 -66.70 410.42 5.00 -61.70 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.11 Total: 31.79 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 6.38 Total: 29.93 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.28 Total: -106.18 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -0.23 Total: -64.14 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.70 5.00 -61.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474925.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.015 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds