Wall clock time and date at job start Tue Mar 31 2020 23:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00260 * 2 1 4 4 O 1.20829 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00123 * 179.72373 * 3 2 1 6 6 C 1.52994 * 109.47211 * 180.28100 * 5 3 2 7 7 N 1.46499 * 109.46879 * 180.02562 * 6 5 3 8 8 C 1.36939 * 120.00518 * 95.49546 * 7 6 5 9 9 H 1.07995 * 120.00138 * 213.18950 * 8 7 6 10 10 C 1.38816 * 119.99789 * 33.18316 * 8 7 6 11 11 N 1.31627 * 119.99866 * 22.67543 * 10 8 7 12 12 Si 1.86798 * 120.00311 * 202.67434 * 10 8 7 13 13 H 1.48497 * 109.47224 * 59.99852 * 12 10 8 14 14 H 1.48497 * 109.47229 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46929 * 300.00296 * 12 10 8 16 16 C 1.46499 * 119.99789 * 275.49239 * 7 6 5 17 17 H 1.09002 * 109.47342 * 0.02562 * 16 7 6 18 18 C 1.52999 * 109.47161 * 239.99895 * 16 7 6 19 19 C 1.50704 * 109.47090 * 120.00458 * 16 7 6 20 20 O 1.21282 * 119.99959 * 359.97438 * 19 16 7 21 21 N 1.34778 * 119.99781 * 180.02562 * 19 16 7 22 22 C 1.46502 * 119.99471 * 179.97438 * 21 19 16 23 23 H 1.08998 * 109.47197 * 35.00374 * 22 21 19 24 24 C 1.52991 * 109.47243 * 274.99636 * 22 21 19 25 25 C 1.52998 * 109.47578 * 300.00281 * 24 22 21 26 26 C 1.53005 * 109.47008 * 300.00055 * 25 24 22 27 27 C 1.53002 * 109.46822 * 59.99853 * 26 25 24 28 28 C 1.52998 * 109.46997 * 299.99585 * 27 26 25 29 29 H 1.09002 * 109.47413 * 300.00183 * 28 27 26 30 30 C 1.53001 * 109.46809 * 180.02562 * 28 27 26 31 31 H 1.09001 * 109.47223 * 59.99292 * 1 2 3 32 32 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46680 * 299.99514 * 1 2 3 34 34 H 1.08999 * 109.47149 * 300.28964 * 5 3 2 35 35 H 1.09005 * 109.46791 * 60.27856 * 5 3 2 36 36 H 1.08997 * 109.46937 * 300.00102 * 6 5 3 37 37 H 1.08992 * 109.47325 * 60.00280 * 6 5 3 38 38 H 0.96994 * 119.99877 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47516 * 300.00056 * 18 16 7 40 40 H 1.09003 * 109.47116 * 60.00019 * 18 16 7 41 41 H 1.09000 * 109.47384 * 179.97438 * 18 16 7 42 42 H 0.96998 * 120.00065 * 359.97438 * 21 19 16 43 43 H 1.09004 * 109.47002 * 60.00447 * 24 22 21 44 44 H 1.09003 * 109.47404 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.47518 * 180.02562 * 25 24 22 46 46 H 1.09002 * 109.46949 * 60.00116 * 25 24 22 47 47 H 1.08993 * 109.46960 * 299.99314 * 26 25 24 48 48 H 1.09001 * 109.46497 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.46359 * 179.97438 * 27 26 25 50 50 H 1.08992 * 109.47275 * 59.99957 * 27 26 25 51 51 H 1.09002 * 109.46858 * 300.00003 * 30 28 27 52 52 H 1.08996 * 109.47494 * 60.00432 * 30 28 27 53 53 H 1.09007 * 109.47155 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0063 6 6 4.0002 2.7419 0.0120 7 7 5.4632 2.8185 0.0175 8 6 6.1454 2.9710 -1.1600 9 1 7.1186 2.5193 -1.2827 10 6 5.5858 3.7062 -2.1960 11 7 4.6597 4.6056 -1.9394 12 14 6.1472 3.4193 -3.9544 13 1 5.8847 2.0077 -4.3337 14 1 5.4018 4.3241 -4.8659 15 1 7.6019 3.6982 -4.0614 16 6 6.1964 2.7319 1.2829 17 1 5.4902 2.6129 2.1046 18 6 7.0095 4.0113 1.4897 19 6 7.1263 1.5466 1.2445 20 8 7.1716 0.8431 0.2576 21 7 7.9067 1.2677 2.3074 22 6 8.8102 0.1150 2.2703 23 1 9.1970 -0.0110 1.2591 24 6 8.0473 -1.1445 2.6852 25 6 7.5044 -0.9676 4.1047 26 6 8.6680 -0.7347 5.0705 27 6 9.4309 0.5249 4.6555 28 6 9.9738 0.3479 3.2361 29 1 10.6461 -0.5096 3.2085 30 6 10.7372 1.6074 2.8213 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9525 0.7781 0.8964 35 1 3.9596 0.7830 -0.8835 36 1 3.6141 3.2384 -0.8782 37 1 3.6070 3.2336 0.9017 38 1 4.2684 5.1191 -2.6633 39 1 7.7157 4.1299 0.6680 40 1 6.3370 4.8688 1.5174 41 1 7.5547 3.9472 2.4314 42 1 7.8701 1.8301 3.0968 43 1 7.2183 -1.3104 1.9972 44 1 8.7197 -2.0021 2.6581 45 1 6.9612 -1.8652 4.4005 46 1 6.8321 -0.1101 4.1323 47 1 9.3402 -1.5923 5.0429 48 1 8.2811 -0.6083 6.0816 49 1 10.2595 0.6910 5.3438 50 1 8.7586 1.3824 4.6830 51 1 10.0652 2.4651 2.8490 52 1 11.5662 1.7729 3.5094 53 1 11.1237 1.4815 1.8099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475181.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:27 Heat of formation + Delta-G solvation = -138.827755 kcal Electronic energy + Delta-G solvation = -32111.875853 eV Core-core repulsion = 27982.893571 eV Total energy + Delta-G solvation = -4128.982282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.46329 -41.20272 -39.33129 -37.75418 -37.11597 -34.60518 -33.76167 -33.36816 -33.11714 -30.94295 -29.91700 -28.51217 -27.10947 -26.51095 -25.20200 -23.74475 -22.96720 -22.25576 -21.56657 -21.09645 -19.84226 -19.04438 -18.47698 -17.61185 -17.52739 -17.25608 -16.98619 -16.48626 -16.22195 -15.78163 -15.62995 -15.51461 -15.00006 -14.79664 -14.64838 -14.58245 -14.15903 -14.14307 -13.75570 -13.64974 -13.57509 -13.22061 -13.05979 -13.03995 -12.90924 -12.78348 -12.73618 -12.61684 -12.53090 -12.37141 -12.34217 -11.92233 -11.87586 -11.79909 -11.74842 -11.59331 -11.47554 -11.33606 -11.13484 -10.84296 -10.57425 -10.33146 -9.73956 -8.61633 -7.82236 -5.33719 1.20114 1.42193 1.46427 1.53435 1.80627 2.03131 2.42045 2.57745 3.29816 3.57315 3.74198 3.89185 3.91420 4.00827 4.19857 4.25173 4.26169 4.30826 4.32011 4.33266 4.40173 4.41960 4.55632 4.61138 4.62555 4.65630 4.67655 4.75976 4.76402 4.78380 4.91384 4.94479 5.01922 5.13761 5.14079 5.18231 5.22004 5.24434 5.35750 5.38243 5.40287 5.44913 5.51398 5.55686 5.60361 5.75050 5.82860 5.88330 6.48180 6.77720 6.85657 7.17627 7.64914 7.86817 8.33337 9.16888 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.004141 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.040001 B = 6760.320380 C = 8798.368829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.469 3.531 4 O -0.535 6.535 5 C -0.117 4.117 6 C 0.162 3.838 7 N -0.568 5.568 8 C -0.228 4.228 9 H 0.052 0.948 10 C -0.039 4.039 11 N -0.912 5.912 12 Si 0.942 3.058 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.144 3.856 17 H 0.098 0.902 18 C -0.131 4.131 19 C 0.498 3.502 20 O -0.564 6.564 21 N -0.712 5.712 22 C 0.151 3.849 23 H 0.050 0.950 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.112 4.112 28 C -0.089 4.089 29 H 0.090 0.910 30 C -0.146 4.146 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.249 0.751 39 H 0.034 0.966 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.406 0.594 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.073 0.927 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -10.616 17.320 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.314 3.686 4 O -0.425 6.425 5 C -0.158 4.158 6 C 0.035 3.965 7 N -0.286 5.286 8 C -0.359 4.359 9 H 0.070 0.930 10 C -0.235 4.235 11 N -0.557 5.557 12 Si 0.771 3.229 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.205 1.205 16 C 0.033 3.967 17 H 0.116 0.884 18 C -0.190 4.190 19 C 0.284 3.716 20 O -0.440 6.440 21 N -0.367 5.367 22 C 0.046 3.954 23 H 0.068 0.932 24 C -0.165 4.165 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.107 4.107 29 H 0.108 0.892 30 C -0.204 4.204 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.243 0.757 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.071 0.929 52 H 0.092 0.908 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.198 -10.692 16.487 20.326 hybrid contribution -0.238 0.258 -1.397 1.441 sum 4.960 -10.434 15.089 19.004 Atomic orbital electron populations 1.23543 0.75107 1.05631 1.02402 1.86540 1.25003 1.33074 1.83956 1.24200 0.92442 0.81067 0.70934 1.90626 1.67846 1.37300 1.46690 1.22102 0.85459 1.03618 1.04590 1.20663 0.83336 0.90257 1.02250 1.43662 1.00902 1.82364 1.01689 1.18979 1.02423 1.23361 0.91101 0.93044 1.25553 1.00387 0.96020 1.01552 1.70099 1.31565 1.22708 1.31296 0.85736 0.77856 0.77014 0.82261 1.21600 1.21746 1.20495 1.20600 0.93692 0.92348 0.90016 0.88391 1.21890 0.99567 0.96680 1.00827 1.22089 0.81019 0.86253 0.82276 1.90638 1.67741 1.51749 1.33920 1.46100 1.41967 1.30702 1.17967 1.20870 0.90053 0.85693 0.98804 0.93204 1.21846 0.99701 0.97535 0.97368 1.21465 0.98297 1.01613 0.93779 1.21518 0.96748 0.98170 0.98656 1.21600 1.00313 0.98163 0.94871 1.21356 0.95079 0.99458 0.94844 0.89194 1.21812 1.00350 0.97382 1.00838 0.92592 0.84754 0.91688 0.88101 0.89626 0.90367 0.94610 0.94201 0.94653 0.93230 0.89831 0.75693 0.94661 0.90476 0.91890 0.92559 0.91359 0.90817 0.90026 0.91836 0.92869 0.90839 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.37 -12.18 10.57 -51.40 -0.54 -12.72 16 3 C 0.47 18.48 7.96 71.24 0.57 19.05 16 4 O -0.54 -23.83 15.73 21.95 0.35 -23.49 16 5 C -0.12 -4.86 6.13 29.85 0.18 -4.67 16 6 C 0.16 7.76 4.47 86.38 0.39 8.15 16 7 N -0.57 -27.49 2.20 -682.23 -1.50 -28.99 16 8 C -0.23 -12.62 7.71 84.03 0.65 -11.98 16 9 H 0.05 3.04 6.69 -2.91 -0.02 3.02 16 10 C -0.04 -2.20 4.91 84.86 0.42 -1.78 16 11 N -0.91 -53.93 11.32 21.65 0.25 -53.69 16 12 Si 0.94 47.18 29.61 68.60 2.03 49.21 16 13 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 14 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 15 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 16 C 0.14 5.49 3.17 44.25 0.14 5.64 16 17 H 0.10 3.22 7.87 -2.39 -0.02 3.20 16 18 C -0.13 -4.56 9.06 71.98 0.65 -3.91 16 19 C 0.50 18.40 6.96 87.66 0.61 19.01 16 20 O -0.56 -26.40 14.29 -3.04 -0.04 -26.44 16 21 N -0.71 -18.62 3.43 -442.53 -1.52 -20.14 16 22 C 0.15 3.64 2.23 44.99 0.10 3.74 16 23 H 0.05 1.56 7.58 -2.39 -0.02 1.54 16 24 C -0.13 -2.85 5.60 30.59 0.17 -2.68 16 25 C -0.11 -2.00 5.77 30.60 0.18 -1.83 16 26 C -0.11 -1.44 5.92 30.60 0.18 -1.26 16 27 C -0.11 -1.41 5.03 30.59 0.15 -1.26 16 28 C -0.09 -1.47 2.51 -10.79 -0.03 -1.50 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 C -0.15 -2.58 9.04 71.98 0.65 -1.92 16 31 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 32 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 34 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.09 3.85 8.14 -2.38 -0.02 3.83 16 36 H 0.08 4.44 5.26 -2.39 -0.01 4.43 16 37 H 0.04 1.65 8.00 -2.39 -0.02 1.64 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.03 1.43 7.66 -2.39 -0.02 1.41 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 2.07 7.57 -2.39 -0.02 2.05 16 42 H 0.41 8.27 6.07 -92.71 -0.56 7.70 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.08 7.60 -2.39 -0.02 1.06 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 0.80 6.50 -2.39 -0.02 0.79 16 51 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 52 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -72.93 414.16 5.54 -67.39 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.32 Total: 24.23 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 6.21 Total: 24.63 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -2.77 Total: -102.82 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.24 Total: -62.65 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -72.93 5.54 -67.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475181.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.439 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds