Wall clock time and date at job start Tue Mar 31 2020 23:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00154 * 2 1 4 4 O 1.20826 * 119.99611 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47174 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47361 * 179.97438 * 6 5 3 8 8 C 1.36936 * 119.99614 * 90.00187 * 7 6 5 9 9 H 1.08000 * 119.99836 * 218.50096 * 8 7 6 10 10 C 1.38809 * 120.00285 * 38.49075 * 8 7 6 11 11 N 1.31619 * 119.99851 * 20.23193 * 10 8 7 12 12 Si 1.86804 * 120.00263 * 200.22865 * 10 8 7 13 13 H 1.48494 * 109.46977 * 270.00415 * 12 10 8 14 14 H 1.48498 * 109.46820 * 30.00412 * 12 10 8 15 15 H 1.48496 * 109.47165 * 150.00316 * 12 10 8 16 16 C 1.46496 * 120.00008 * 270.00051 * 7 6 5 17 17 H 1.09001 * 109.47273 * 355.70364 * 16 7 6 18 18 C 1.52998 * 109.47124 * 235.70101 * 16 7 6 19 19 C 1.50701 * 109.46723 * 115.70281 * 16 7 6 20 20 O 1.21283 * 120.00275 * 0.02562 * 19 16 7 21 21 N 1.34777 * 120.00010 * 179.97438 * 19 16 7 22 22 C 1.46501 * 120.00116 * 179.97438 * 21 19 16 23 23 H 1.08996 * 109.47324 * 35.00189 * 22 21 19 24 24 C 1.52999 * 109.46924 * 274.99838 * 22 21 19 25 25 C 1.53000 * 109.46754 * 179.97438 * 24 22 21 26 26 C 1.53007 * 109.47309 * 60.00461 * 25 24 22 27 27 C 1.52999 * 109.46821 * 300.00177 * 26 25 24 28 28 C 1.53000 * 109.47485 * 59.99473 * 27 26 25 29 29 H 1.08993 * 109.46892 * 60.00482 * 28 27 26 30 30 C 1.52999 * 109.46916 * 180.02562 * 28 27 26 31 31 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47169 * 300.00353 * 1 2 3 33 33 H 1.08996 * 109.46869 * 60.00782 * 1 2 3 34 34 H 1.08994 * 109.47290 * 59.99650 * 5 3 2 35 35 H 1.09001 * 109.46803 * 299.99631 * 5 3 2 36 36 H 1.09006 * 109.47270 * 59.99990 * 6 5 3 37 37 H 1.09001 * 109.47304 * 299.99752 * 6 5 3 38 38 H 0.96998 * 120.00046 * 179.97438 * 11 10 8 39 39 H 1.08994 * 109.46887 * 173.22673 * 18 16 7 40 40 H 1.09000 * 109.46948 * 293.22291 * 18 16 7 41 41 H 1.08993 * 109.47053 * 53.22280 * 18 16 7 42 42 H 0.97004 * 120.00081 * 0.02562 * 21 19 16 43 43 H 1.08993 * 109.47217 * 299.99802 * 24 22 21 44 44 H 1.08996 * 109.46747 * 60.00659 * 24 22 21 45 45 H 1.08996 * 109.47578 * 300.00402 * 25 24 22 46 46 H 1.09003 * 109.47653 * 180.02562 * 25 24 22 47 47 H 1.08996 * 109.47328 * 179.97438 * 26 25 24 48 48 H 1.09005 * 109.46967 * 59.99627 * 26 25 24 49 49 H 1.09005 * 109.46900 * 299.99490 * 27 26 25 50 50 H 1.08999 * 109.47142 * 179.97438 * 27 26 25 51 51 H 1.09003 * 109.46603 * 180.02562 * 30 28 27 52 52 H 1.09007 * 109.47240 * 299.99476 * 30 28 27 53 53 H 1.08994 * 109.47894 * 60.00028 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8187 -0.0011 8 6 6.1469 2.8542 -1.1870 9 1 7.0801 2.3200 -1.2884 10 6 5.6406 3.5764 -2.2588 11 7 4.7546 4.5275 -2.0516 12 14 6.2166 3.1987 -3.9952 13 1 7.4036 4.0317 -4.3151 14 1 6.5785 1.7620 -4.0950 15 1 5.1255 3.5022 -4.9557 16 6 6.1946 2.8575 1.2677 17 1 5.4857 2.8978 2.0947 18 6 7.0898 4.0978 1.3025 19 6 7.0454 1.6202 1.3950 20 8 7.0415 0.7881 0.5126 21 7 7.8114 1.4387 2.4890 22 6 8.6380 0.2355 2.6130 23 1 9.0108 -0.0521 1.6300 24 6 7.7970 -0.9034 3.1930 25 6 8.6601 -2.1601 3.3219 26 6 9.8416 -1.8743 4.2512 27 6 10.6825 -0.7352 3.6714 28 6 9.8193 0.5215 3.5423 29 1 9.4470 0.8090 4.5255 30 6 10.6602 1.6603 2.9619 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 3.9558 0.7809 -0.8907 35 1 3.9564 0.7806 0.8892 36 1 3.6108 3.2364 0.8889 37 1 3.6102 3.2359 -0.8911 38 1 4.4011 5.0325 -2.8005 39 1 7.5415 4.1922 2.2900 40 1 7.8743 4.0008 0.5519 41 1 6.4915 4.9838 1.0904 42 1 7.8148 2.1043 3.1946 43 1 7.4243 -0.6158 4.1760 44 1 6.9557 -1.1074 2.5307 45 1 9.0326 -2.4476 2.3387 46 1 8.0610 -2.9718 3.7347 47 1 10.4563 -2.7696 4.3434 48 1 9.4691 -1.5868 5.2345 49 1 11.0550 -1.0227 2.6881 50 1 11.5239 -0.5312 4.3336 51 1 10.0453 2.5557 2.8704 52 1 11.5021 1.8642 3.6236 53 1 11.0323 1.3726 1.9786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475183.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:36 Heat of formation + Delta-G solvation = -144.925056 kcal Electronic energy + Delta-G solvation = -31756.186619 eV Core-core repulsion = 27626.939938 eV Total energy + Delta-G solvation = -4129.246681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.45631 -41.03638 -39.32688 -37.77272 -37.13714 -35.03112 -33.80638 -33.35091 -33.16629 -30.76960 -29.76474 -28.49833 -27.12082 -26.56184 -25.17722 -23.83475 -22.69580 -22.07096 -21.49890 -21.19036 -20.50328 -18.93183 -18.44048 -17.61371 -17.51734 -17.28715 -17.16100 -16.61387 -16.00518 -15.81028 -15.45731 -15.35101 -15.01985 -14.94247 -14.75009 -14.65411 -14.19468 -14.07444 -13.77700 -13.66740 -13.58078 -13.30963 -13.16014 -13.03352 -12.91610 -12.78381 -12.72729 -12.62119 -12.42004 -12.35583 -12.11661 -11.93873 -11.85867 -11.79635 -11.76325 -11.59481 -11.48009 -11.38755 -11.30044 -11.06629 -10.60844 -10.32295 -9.75836 -8.55288 -7.81988 -5.42098 1.19568 1.40486 1.45093 1.55162 1.80838 2.01904 2.39470 2.56031 3.29238 3.57545 3.70146 3.84163 3.99286 4.01509 4.18586 4.22909 4.25969 4.30634 4.31707 4.33239 4.41326 4.43609 4.53421 4.54550 4.60562 4.61890 4.65692 4.68101 4.77101 4.83287 4.89144 4.96432 5.04924 5.12290 5.15423 5.16629 5.20843 5.24685 5.31273 5.32963 5.37480 5.41414 5.46877 5.57583 5.59919 5.72201 5.80839 5.85576 6.50705 6.77174 6.85521 7.17813 7.63587 7.84688 8.34974 9.15456 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009172 B = 0.003811 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.979970 B = 7345.272237 C = 9210.992174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.470 3.530 4 O -0.535 6.535 5 C -0.116 4.116 6 C 0.165 3.835 7 N -0.567 5.567 8 C -0.234 4.234 9 H 0.045 0.955 10 C -0.030 4.030 11 N -0.910 5.910 12 Si 0.941 3.059 13 H -0.281 1.281 14 H -0.283 1.283 15 H -0.290 1.290 16 C 0.145 3.855 17 H 0.098 0.902 18 C -0.126 4.126 19 C 0.497 3.503 20 O -0.565 6.565 21 N -0.719 5.719 22 C 0.152 3.848 23 H 0.046 0.954 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.110 4.110 28 C -0.088 4.088 29 H 0.093 0.907 30 C -0.146 4.146 31 H 0.134 0.866 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.409 0.591 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.084 0.916 51 H 0.054 0.946 52 H 0.073 0.927 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -10.217 16.993 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.314 3.686 4 O -0.425 6.425 5 C -0.156 4.156 6 C 0.039 3.961 7 N -0.286 5.286 8 C -0.365 4.365 9 H 0.063 0.937 10 C -0.228 4.228 11 N -0.554 5.554 12 Si 0.770 3.230 13 H -0.208 1.208 14 H -0.208 1.208 15 H -0.217 1.217 16 C 0.034 3.966 17 H 0.116 0.884 18 C -0.185 4.185 19 C 0.282 3.718 20 O -0.442 6.442 21 N -0.373 5.373 22 C 0.047 3.953 23 H 0.065 0.935 24 C -0.162 4.162 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.107 4.107 29 H 0.112 0.888 30 C -0.204 4.204 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.073 0.927 52 H 0.092 0.908 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.673 -10.384 16.216 20.074 hybrid contribution -0.248 0.250 -1.433 1.476 sum 5.425 -10.134 14.782 18.726 Atomic orbital electron populations 1.23544 0.75089 1.05635 1.02420 1.86544 1.25028 1.33105 1.83938 1.24213 0.92438 0.81064 0.70892 1.90618 1.67839 1.37275 1.46760 1.22079 0.85344 1.03687 1.04524 1.20613 0.83553 0.90202 1.01780 1.43611 1.00773 1.83412 1.00773 1.18865 1.05838 1.22273 0.89539 0.93707 1.25683 1.00087 0.95460 1.01538 1.70090 1.33765 1.21040 1.30474 0.85699 0.77438 0.77857 0.82010 1.20780 1.20824 1.21659 1.20632 0.94139 0.91659 0.90181 0.88420 1.21828 0.98881 0.96636 1.01160 1.22237 0.80032 0.88493 0.80993 1.90631 1.65920 1.46460 1.41183 1.46111 1.45604 1.23843 1.21709 1.20920 0.90844 0.84942 0.98574 0.93523 1.21852 0.97972 0.95503 1.00884 1.21494 0.97299 0.96724 0.99888 1.21537 0.96108 0.98636 0.98875 1.21573 0.98110 0.93818 1.01331 1.21356 0.94021 0.96340 0.98934 0.88840 1.21820 1.00136 0.97996 1.00434 0.84779 0.91680 0.92539 0.89638 0.88376 0.94184 0.91119 0.94098 0.89540 0.94728 0.93489 0.75503 0.90448 0.94738 0.93410 0.91103 0.90845 0.90671 0.93022 0.89728 0.92676 0.90773 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.37 -12.35 10.57 -51.37 -0.54 -12.89 16 3 C 0.47 18.64 7.96 71.24 0.57 19.20 16 4 O -0.54 -23.82 15.73 21.97 0.35 -23.47 16 5 C -0.12 -4.88 6.13 29.85 0.18 -4.69 16 6 C 0.17 7.93 4.56 86.38 0.39 8.32 16 7 N -0.57 -27.58 2.12 -682.21 -1.44 -29.02 16 8 C -0.23 -12.96 7.74 84.03 0.65 -12.31 16 9 H 0.05 2.67 6.93 -2.91 -0.02 2.65 16 10 C -0.03 -1.71 4.98 84.86 0.42 -1.29 16 11 N -0.91 -53.42 11.46 21.65 0.25 -53.18 16 12 Si 0.94 46.66 29.60 68.60 2.03 48.69 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 16 C 0.14 5.56 3.17 44.25 0.14 5.71 16 17 H 0.10 3.24 7.77 -2.39 -0.02 3.23 16 18 C -0.13 -4.45 8.82 71.98 0.64 -3.81 16 19 C 0.50 18.56 6.99 87.66 0.61 19.17 16 20 O -0.57 -26.69 14.58 -3.04 -0.04 -26.73 16 21 N -0.72 -19.07 4.29 -442.53 -1.90 -20.96 16 22 C 0.15 3.75 1.90 44.99 0.09 3.83 16 23 H 0.05 1.52 7.58 -2.39 -0.02 1.50 16 24 C -0.12 -2.84 5.49 30.59 0.17 -2.67 16 25 C -0.12 -2.18 5.92 30.60 0.18 -2.00 16 26 C -0.11 -1.57 5.92 30.60 0.18 -1.39 16 27 C -0.11 -1.63 5.20 30.59 0.16 -1.47 16 28 C -0.09 -1.48 2.30 -10.79 -0.02 -1.51 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 C -0.15 -2.62 9.03 71.98 0.65 -1.97 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.04 1.83 7.84 -2.38 -0.02 1.81 16 37 H 0.07 4.00 5.50 -2.39 -0.01 3.98 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 40 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.41 8.09 7.95 -92.71 -0.74 7.35 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 1.04 7.45 -2.39 -0.02 1.02 16 52 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.28 419.63 5.04 -68.24 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.14 Total: 24.38 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 6.20 Total: 24.94 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.09 Total: -103.16 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -0.24 Total: -63.09 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.28 5.04 -68.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475183.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.686 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds