Wall clock time and date at job start Tue Mar 31 2020 23:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00584 * 2 1 4 4 O 1.20824 * 119.99735 * 359.72264 * 3 2 1 5 5 C 1.50696 * 120.00246 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47143 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47079 * 179.97438 * 6 5 3 8 8 C 1.36939 * 119.99991 * 264.95669 * 7 6 5 9 9 H 1.07999 * 119.99398 * 149.75833 * 8 7 6 10 10 C 1.38810 * 119.99975 * 329.76228 * 8 7 6 11 11 N 1.31624 * 120.00358 * 332.47049 * 10 8 7 12 12 Si 1.86803 * 119.99965 * 152.47384 * 10 8 7 13 13 H 1.48501 * 109.46807 * 84.99481 * 12 10 8 14 14 H 1.48491 * 109.47156 * 204.99469 * 12 10 8 15 15 H 1.48500 * 109.47134 * 324.99872 * 12 10 8 16 16 C 1.46496 * 119.99839 * 84.95841 * 7 6 5 17 17 H 1.09002 * 109.46945 * 0.02562 * 16 7 6 18 18 C 1.52995 * 109.47400 * 239.99958 * 16 7 6 19 19 C 1.50699 * 109.47202 * 119.99771 * 16 7 6 20 20 O 1.21286 * 119.99888 * 0.02562 * 19 16 7 21 21 N 1.34772 * 120.00325 * 179.97438 * 19 16 7 22 22 C 1.46501 * 120.00369 * 180.02562 * 21 19 16 23 23 H 1.08998 * 109.46890 * 325.00687 * 22 21 19 24 24 C 1.53001 * 109.47056 * 85.00219 * 22 21 19 25 25 C 1.52995 * 109.46981 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47431 * 299.99829 * 25 24 22 27 27 C 1.53001 * 109.46898 * 60.00120 * 26 25 24 28 28 C 1.53001 * 109.47173 * 205.00175 * 22 21 19 29 29 H 1.08994 * 109.47166 * 299.99944 * 28 22 21 30 30 C 1.52997 * 109.47239 * 60.00394 * 28 22 21 31 31 H 1.09001 * 109.46923 * 59.99815 * 1 2 3 32 32 H 1.08993 * 109.47739 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46893 * 300.00434 * 1 2 3 34 34 H 1.09008 * 109.46771 * 299.99356 * 5 3 2 35 35 H 1.08998 * 109.47470 * 59.99589 * 5 3 2 36 36 H 1.09000 * 109.47093 * 299.99766 * 6 5 3 37 37 H 1.09006 * 109.46961 * 59.99831 * 6 5 3 38 38 H 0.96991 * 120.00043 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.47096 * 59.99975 * 18 16 7 40 40 H 1.08998 * 109.47561 * 179.97438 * 18 16 7 41 41 H 1.09009 * 109.47144 * 300.00399 * 18 16 7 42 42 H 0.97003 * 120.00215 * 0.02562 * 21 19 16 43 43 H 1.08999 * 109.47263 * 300.00297 * 24 22 21 44 44 H 1.09001 * 109.46593 * 60.00050 * 24 22 21 45 45 H 1.09001 * 109.47559 * 60.00466 * 25 24 22 46 46 H 1.09009 * 109.46715 * 180.02562 * 25 24 22 47 47 H 1.08997 * 109.47349 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.46805 * 300.00700 * 26 25 24 49 49 H 1.08998 * 109.46890 * 59.99863 * 27 26 25 50 50 H 1.08999 * 109.47263 * 180.02562 * 27 26 25 51 51 H 1.09006 * 109.47371 * 59.99340 * 30 28 22 52 52 H 1.08999 * 109.47409 * 179.97438 * 30 28 22 53 53 H 1.09007 * 109.47274 * 299.99939 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0051 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 7 5.4633 2.8185 -0.0011 8 6 6.1416 2.9588 1.1803 9 1 7.1342 2.5465 1.2852 10 6 5.5532 3.6309 2.2428 11 7 4.6551 4.5656 2.0141 12 14 6.0360 3.2088 3.9973 13 1 7.2528 3.9726 4.3731 14 1 4.9248 3.5649 4.9157 15 1 6.3143 1.7536 4.0977 16 6 6.2007 2.7449 -1.2648 17 1 5.4971 2.6353 -2.0901 18 6 7.1445 1.5412 -1.2353 19 6 7.0021 4.0072 -1.4529 20 8 6.9618 4.8819 -0.6137 21 7 7.7646 4.1636 -2.5532 22 6 8.5442 5.3905 -2.7358 23 1 7.9908 6.2366 -2.3284 24 6 9.8825 5.2576 -2.0064 25 6 10.6964 6.5391 -2.1966 26 6 10.9491 6.7662 -3.6885 27 6 9.6107 6.8990 -4.4179 28 6 8.7968 5.6169 -4.2278 29 1 9.3501 4.7708 -4.6351 30 6 7.4585 5.7498 -4.9572 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.9564 0.7804 0.8893 35 1 3.9558 0.7807 -0.8907 36 1 3.6103 3.2358 -0.8911 37 1 3.6108 3.2362 0.8889 38 1 4.2438 5.0349 2.7566 39 1 6.5647 0.6281 -1.0993 40 1 7.6928 1.4862 -2.1758 41 1 7.8480 1.6512 -0.4100 42 1 7.7972 3.4640 -3.2243 43 1 9.7026 5.0963 -0.9435 44 1 10.4358 4.4114 -2.4138 45 1 10.1429 7.3850 -1.7889 46 1 11.6501 6.4442 -1.6773 47 1 11.5293 7.6789 -3.8239 48 1 11.5025 5.9202 -4.0960 49 1 9.0572 7.7449 -4.0102 50 1 9.7906 7.0604 -5.4808 51 1 6.9050 6.5960 -4.5498 52 1 7.6384 5.9116 -6.0200 53 1 6.8783 4.8370 -4.8214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:40 Heat of formation + Delta-G solvation = -140.296662 kcal Electronic energy + Delta-G solvation = -31559.297828 eV Core-core repulsion = 27430.251850 eV Total energy + Delta-G solvation = -4129.045978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.40476 -40.97490 -39.29395 -37.75094 -37.11982 -34.98210 -33.82658 -33.33582 -33.02476 -30.75931 -29.76811 -28.48159 -27.16384 -26.56984 -25.00287 -23.83817 -22.71007 -22.07067 -21.46446 -21.13344 -20.50620 -18.96039 -18.28141 -17.59344 -17.39059 -17.33535 -17.15782 -16.58901 -15.90350 -15.75267 -15.47594 -15.35103 -15.05247 -14.87265 -14.74316 -14.43163 -14.34380 -14.11070 -13.79665 -13.71207 -13.41313 -13.30719 -13.07071 -12.92598 -12.90670 -12.80404 -12.70403 -12.54694 -12.44076 -12.39955 -12.10352 -11.96683 -11.85639 -11.78833 -11.76162 -11.51115 -11.42392 -11.41605 -11.29687 -11.08116 -10.46816 -10.19046 -9.70213 -8.62180 -7.76583 -5.22800 1.26779 1.44396 1.46478 1.54980 1.83837 2.15790 2.49666 2.58372 3.35471 3.59543 3.69168 3.82498 3.98532 4.05762 4.18575 4.21833 4.30776 4.31936 4.35642 4.37351 4.44822 4.46271 4.51138 4.53474 4.60556 4.61569 4.69238 4.73171 4.80970 4.82572 4.87568 5.00710 5.03000 5.10704 5.14504 5.18171 5.21229 5.23672 5.28654 5.31488 5.39744 5.44098 5.45520 5.54077 5.58765 5.78408 5.84073 5.88174 6.45318 6.83269 6.94151 7.21130 7.77821 7.93642 8.37378 9.24646 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003299 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.877702 B = 8485.216392 C =10052.722689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.544 6.544 5 C -0.116 4.116 6 C 0.163 3.837 7 N -0.568 5.568 8 C -0.227 4.227 9 H 0.060 0.940 10 C -0.042 4.042 11 N -0.909 5.909 12 Si 0.940 3.060 13 H -0.296 1.296 14 H -0.298 1.298 15 H -0.260 1.260 16 C 0.139 3.861 17 H 0.096 0.904 18 C -0.136 4.136 19 C 0.481 3.519 20 O -0.553 6.553 21 N -0.722 5.722 22 C 0.153 3.847 23 H 0.037 0.963 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.111 4.111 28 C -0.086 4.086 29 H 0.097 0.903 30 C -0.145 4.145 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.018 0.982 37 H 0.068 0.932 38 H 0.241 0.759 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.408 0.592 43 H 0.024 0.976 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.047 0.953 50 H 0.088 0.912 51 H 0.032 0.968 52 H 0.077 0.923 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -7.272 -17.021 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.434 6.434 5 C -0.155 4.155 6 C 0.036 3.964 7 N -0.286 5.286 8 C -0.357 4.357 9 H 0.078 0.922 10 C -0.239 4.239 11 N -0.553 5.553 12 Si 0.769 3.231 13 H -0.223 1.223 14 H -0.225 1.225 15 H -0.185 1.185 16 C 0.028 3.972 17 H 0.114 0.886 18 C -0.195 4.195 19 C 0.266 3.734 20 O -0.427 6.427 21 N -0.378 5.378 22 C 0.048 3.952 23 H 0.055 0.945 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.105 4.105 29 H 0.115 0.885 30 C -0.202 4.202 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.244 0.756 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.052 0.948 52 H 0.096 0.904 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.192 -6.252 -16.280 18.506 hybrid contribution -0.425 0.490 1.451 1.589 sum 5.767 -5.762 -14.829 16.922 Atomic orbital electron populations 1.23516 0.75377 1.05618 1.02150 1.86523 1.24693 1.32858 1.83966 1.24349 0.92820 0.80964 0.70778 1.90648 1.68129 1.37718 1.46934 1.22050 0.85006 1.02263 1.06214 1.20533 0.83220 0.91456 1.01220 1.43986 1.01037 1.82356 1.01240 1.18885 1.00713 1.27280 0.88841 0.92199 1.25585 1.00819 0.95615 1.01847 1.70292 1.32586 1.22336 1.30129 0.85727 0.76417 0.78907 0.82075 1.22333 1.22471 1.18458 1.20892 0.94259 0.91646 0.90362 0.88610 1.21983 0.98887 0.96887 1.01712 1.22546 0.79628 0.90314 0.80864 1.90772 1.64203 1.44282 1.43484 1.46192 1.47639 1.20644 1.23297 1.20850 0.90894 0.87105 0.96375 0.94500 1.21834 0.96126 0.99283 0.98862 1.21505 0.99461 0.96356 0.98207 1.21525 0.97207 1.02803 0.93399 1.21591 0.95553 0.96194 1.01528 1.21359 0.97248 0.99994 0.91864 0.88513 1.21809 0.96298 1.01382 1.00718 0.92022 0.84561 0.92883 0.87847 0.85921 0.96352 0.91400 0.95013 0.90709 0.89754 0.94603 0.75577 0.95751 0.90197 0.93919 0.91233 0.90767 0.90360 0.93366 0.89329 0.94843 0.90445 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.87 10.56 -51.37 -0.54 -11.41 16 3 C 0.47 17.17 7.96 71.23 0.57 17.73 16 4 O -0.54 -24.09 15.73 21.97 0.35 -23.74 16 5 C -0.12 -4.20 6.13 29.85 0.18 -4.02 16 6 C 0.16 7.74 4.50 86.38 0.39 8.12 16 7 N -0.57 -27.11 2.22 -682.20 -1.51 -28.62 16 8 C -0.23 -12.39 7.50 84.03 0.63 -11.76 16 9 H 0.06 3.29 6.86 -2.91 -0.02 3.27 16 10 C -0.04 -2.45 4.82 84.86 0.41 -2.04 16 11 N -0.91 -57.73 11.43 21.65 0.25 -57.49 16 12 Si 0.94 46.95 29.63 68.60 2.03 48.98 16 13 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 14 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 16 C 0.14 5.22 3.17 44.24 0.14 5.36 16 17 H 0.10 3.10 7.86 -2.39 -0.02 3.08 16 18 C -0.14 -3.93 9.06 71.98 0.65 -3.28 16 19 C 0.48 19.92 7.00 87.66 0.61 20.54 16 20 O -0.55 -30.69 14.92 -3.05 -0.05 -30.74 16 21 N -0.72 -21.26 4.28 -442.53 -1.89 -23.15 16 22 C 0.15 4.37 1.90 44.99 0.09 4.46 16 23 H 0.04 1.40 7.58 -2.39 -0.02 1.38 16 24 C -0.12 -3.40 5.49 30.59 0.17 -3.23 16 25 C -0.12 -2.70 5.92 30.59 0.18 -2.52 16 26 C -0.11 -1.83 5.92 30.60 0.18 -1.65 16 27 C -0.11 -1.88 5.21 30.61 0.16 -1.73 16 28 C -0.09 -1.63 2.30 -10.78 -0.02 -1.66 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 C -0.14 -2.77 9.04 71.98 0.65 -2.12 16 31 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 3.80 8.14 -2.38 -0.02 3.78 16 35 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.02 0.88 7.98 -2.39 -0.02 0.86 16 37 H 0.07 3.93 5.24 -2.38 -0.01 3.92 16 38 H 0.24 15.09 8.31 -92.72 -0.77 14.32 16 39 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 1.73 7.56 -2.39 -0.02 1.71 16 41 H 0.03 1.23 6.96 -2.38 -0.02 1.21 16 42 H 0.41 8.62 7.81 -92.71 -0.72 7.89 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.06 1.09 7.45 -2.38 -0.02 1.07 16 Total: -1.00 -82.09 418.57 4.97 -77.12 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.16 Total: 25.06 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.18 Total: 23.99 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.16 Total: -109.26 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -0.24 Total: -65.90 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -82.09 4.97 -77.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.172 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds