Wall clock time and date at job start Tue Mar 31 2020 23:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00211 * 2 1 4 4 O 1.20826 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00410 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47467 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.47323 * 180.02562 * 6 5 3 8 8 C 1.36934 * 120.00194 * 269.99924 * 7 6 5 9 9 H 1.07999 * 119.99866 * 142.80237 * 8 7 6 10 10 C 1.38814 * 120.00143 * 322.81472 * 8 7 6 11 11 N 1.31628 * 119.99541 * 337.37678 * 10 8 7 12 12 Si 1.86794 * 120.00209 * 157.38074 * 10 8 7 13 13 H 1.48495 * 109.47355 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47213 * 119.99665 * 12 10 8 15 15 H 1.48498 * 109.47279 * 239.99205 * 12 10 8 16 16 C 1.46501 * 120.00036 * 89.99903 * 7 6 5 17 17 H 1.09000 * 109.47061 * 0.16173 * 16 7 6 18 18 C 1.53000 * 109.47480 * 240.16255 * 16 7 6 19 19 C 1.50702 * 109.47257 * 120.15839 * 16 7 6 20 20 O 1.21282 * 119.99817 * 18.27410 * 19 16 7 21 21 N 1.34772 * 120.00246 * 198.27365 * 19 16 7 22 22 C 1.46926 * 120.63132 * 3.91736 * 21 19 16 23 23 C 1.53625 * 108.53926 * 126.36874 * 22 21 19 24 24 H 1.08996 * 109.66465 * 294.85235 * 23 22 21 25 25 C 1.53005 * 109.42926 * 174.72694 * 23 22 21 26 26 C 1.53045 * 109.23994 * 54.86207 * 23 22 21 27 27 C 1.53037 * 109.53513 * 298.50763 * 26 23 22 28 28 H 1.08997 * 109.49786 * 301.41136 * 27 26 23 29 29 C 1.53007 * 109.49492 * 181.31656 * 27 26 23 30 30 C 1.46930 * 120.62910 * 184.20492 * 21 19 16 31 31 H 1.09003 * 109.47208 * 300.00068 * 1 2 3 32 32 H 1.09004 * 109.47499 * 60.00050 * 1 2 3 33 33 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47544 * 300.00602 * 5 3 2 35 35 H 1.09005 * 109.47044 * 60.00072 * 5 3 2 36 36 H 1.09005 * 109.47074 * 300.00278 * 6 5 3 37 37 H 1.08995 * 109.47102 * 60.00005 * 6 5 3 38 38 H 0.96999 * 119.99370 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.47038 * 53.77783 * 18 16 7 40 40 H 1.08992 * 109.47101 * 173.78356 * 18 16 7 41 41 H 1.09002 * 109.46682 * 293.78099 * 18 16 7 42 42 H 1.08990 * 109.59178 * 246.20623 * 22 21 19 43 43 H 1.09003 * 109.58408 * 6.63862 * 22 21 19 44 44 H 1.09003 * 109.47126 * 300.28963 * 25 23 22 45 45 H 1.08997 * 109.47025 * 60.29130 * 25 23 22 46 46 H 1.08997 * 109.46690 * 180.29291 * 25 23 22 47 47 H 1.08996 * 109.45802 * 178.48870 * 26 23 22 48 48 H 1.09000 * 109.44569 * 58.52372 * 26 23 22 49 49 H 1.08993 * 109.47025 * 300.16462 * 29 27 26 50 50 H 1.09006 * 109.46889 * 60.16283 * 29 27 26 51 51 H 1.09001 * 109.47005 * 180.16287 * 29 27 26 52 52 H 1.08997 * 109.58678 * 353.37023 * 30 21 19 53 53 H 1.09006 * 109.58471 * 113.79734 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1469 2.8542 1.1869 9 1 7.0905 2.3373 1.2817 10 6 5.6273 3.5541 2.2672 11 7 4.7576 4.5218 2.0674 12 14 6.1622 3.1228 4.0041 13 1 7.1402 2.0063 3.9581 14 1 6.7937 4.3089 4.6365 15 1 4.9776 2.7102 4.7989 16 6 6.1945 2.8575 -1.2677 17 1 5.4870 2.8236 -2.0962 18 6 7.1354 1.6539 -1.3511 19 6 6.9984 4.1299 -1.3455 20 8 7.2367 4.7592 -0.3364 21 7 7.4525 4.5684 -2.5362 22 6 7.1004 3.8647 -3.7769 23 6 6.4927 4.8786 -4.7581 24 1 5.5514 5.2563 -4.3590 25 6 6.2396 4.1959 -6.1038 26 6 7.4690 6.0414 -4.9508 27 6 7.6973 6.7452 -3.6112 28 1 6.7448 7.1053 -3.2224 29 6 8.6478 7.9275 -3.8111 30 6 8.3141 5.7558 -2.6176 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.9558 0.7809 0.8908 35 1 3.9564 0.7806 -0.8892 36 1 3.6107 3.2364 -0.8889 37 1 3.6101 3.2359 0.8910 38 1 4.3948 5.0111 2.8223 39 1 6.5689 0.7377 -1.1845 40 1 7.5971 1.6213 -2.3379 41 1 7.9105 1.7453 -0.5901 42 1 7.9960 3.4220 -4.2127 43 1 6.3724 3.0830 -3.5597 44 1 7.1811 3.8175 -6.5020 45 1 5.5443 3.3679 -5.9660 46 1 5.8132 4.9162 -6.8020 47 1 7.0530 6.7499 -5.6670 48 1 8.4181 5.6597 -5.3270 49 1 9.5994 7.5667 -4.2013 50 1 8.2085 8.6313 -4.5182 51 1 8.8124 8.4268 -2.8562 52 1 8.3872 6.2222 -1.6351 53 1 9.3067 5.4641 -2.9608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475440.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:50 Heat of formation + Delta-G solvation = -127.776909 kcal Electronic energy + Delta-G solvation = -32018.479131 eV Core-core repulsion = 27889.976050 eV Total energy + Delta-G solvation = -4128.503081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.41438 -41.13372 -38.95316 -37.71545 -37.10278 -34.91775 -34.25018 -33.63232 -32.98780 -30.30577 -28.49372 -27.73669 -27.51195 -26.76472 -26.32420 -24.58071 -23.00761 -21.69466 -21.48002 -21.02853 -19.95661 -18.87301 -18.15430 -17.66620 -17.56261 -17.33200 -17.05761 -16.36565 -16.12925 -15.72246 -15.62088 -15.58603 -15.14584 -14.77964 -14.52895 -14.42347 -14.03164 -13.83368 -13.77540 -13.63432 -13.47581 -13.19985 -13.03981 -12.97019 -12.91019 -12.83315 -12.81331 -12.71927 -12.58263 -12.39613 -12.35982 -12.00886 -11.86283 -11.76862 -11.74136 -11.65951 -11.51156 -11.43619 -11.42150 -11.19025 -10.46236 -10.22048 -9.34614 -8.55412 -7.75627 -5.31320 1.26868 1.42749 1.46031 1.55284 1.83151 2.08277 2.28151 2.56577 3.38390 3.56301 3.70218 3.84481 3.90520 4.02132 4.05704 4.10025 4.26209 4.32905 4.34883 4.35870 4.38578 4.45227 4.49757 4.58851 4.65409 4.70823 4.71930 4.73321 4.78130 4.81753 4.85772 4.90312 4.95441 4.97708 5.06835 5.11448 5.14055 5.20344 5.24009 5.32469 5.35142 5.43748 5.44057 5.50322 5.57910 5.76705 5.81002 5.87232 6.48208 6.71119 6.83381 7.21703 7.66709 7.89405 8.37282 9.24857 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.004048 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.359505 B = 6915.184630 C = 8914.612850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.467 3.533 4 O -0.544 6.544 5 C -0.116 4.116 6 C 0.167 3.833 7 N -0.571 5.571 8 C -0.222 4.222 9 H 0.057 0.943 10 C -0.036 4.036 11 N -0.914 5.914 12 Si 0.943 3.057 13 H -0.260 1.260 14 H -0.306 1.306 15 H -0.289 1.289 16 C 0.145 3.855 17 H 0.091 0.909 18 C -0.135 4.135 19 C 0.482 3.518 20 O -0.552 6.552 21 N -0.625 5.625 22 C 0.109 3.891 23 C -0.109 4.109 24 H 0.048 0.952 25 C -0.136 4.136 26 C -0.098 4.098 27 C -0.103 4.103 28 H 0.040 0.960 29 C -0.138 4.138 30 C 0.116 3.884 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.024 0.976 37 H 0.060 0.940 38 H 0.241 0.759 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.043 0.957 52 H 0.046 0.954 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -6.835 -19.079 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.312 3.688 4 O -0.434 6.434 5 C -0.155 4.155 6 C 0.040 3.960 7 N -0.290 5.290 8 C -0.352 4.352 9 H 0.074 0.926 10 C -0.233 4.233 11 N -0.558 5.558 12 Si 0.773 3.227 13 H -0.184 1.184 14 H -0.234 1.234 15 H -0.215 1.215 16 C 0.035 3.965 17 H 0.109 0.891 18 C -0.194 4.194 19 C 0.269 3.731 20 O -0.426 6.426 21 N -0.361 5.361 22 C -0.013 4.013 23 C -0.128 4.128 24 H 0.067 0.933 25 C -0.194 4.194 26 C -0.136 4.136 27 C -0.123 4.123 28 H 0.058 0.942 29 C -0.196 4.196 30 C -0.007 4.007 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.065 0.935 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.783 -6.126 -18.385 19.460 hybrid contribution -0.272 0.865 1.706 1.932 sum 1.511 -5.261 -16.679 17.554 Atomic orbital electron populations 1.23517 0.75364 1.05605 1.02167 1.86525 1.24702 1.32865 1.83949 1.24332 0.92774 0.80969 0.70754 1.90643 1.68116 1.37690 1.46979 1.22039 0.85018 1.02245 1.06242 1.20469 0.83139 0.91526 1.00830 1.43977 1.01031 1.83277 1.00712 1.18861 1.04782 1.23618 0.87959 0.92563 1.25763 1.00442 0.95048 1.02052 1.70222 1.34956 1.21097 1.29507 0.85582 0.77686 0.77435 0.82034 1.18404 1.23377 1.21546 1.20842 0.94148 0.91291 0.90268 0.89083 1.21964 0.98893 0.97090 1.01476 1.22627 0.79601 0.88414 0.82454 1.90735 1.57093 1.58348 1.36468 1.48550 1.51201 1.29428 1.06924 1.22126 1.01101 0.94763 0.83263 1.21601 0.98298 0.96256 0.96685 0.93343 1.21710 1.02655 1.00566 0.94489 1.21596 1.00042 0.96712 0.95233 1.21450 0.98620 0.95841 0.96389 0.94162 1.21718 0.99472 0.96795 1.01579 1.21536 0.93658 0.86385 0.99136 0.92904 0.91940 0.84614 0.87907 0.85908 0.95741 0.92191 0.95025 0.90439 0.90012 0.94876 0.89308 0.89297 0.90940 0.92026 0.91928 0.90695 0.89999 0.90888 0.91202 0.93819 0.93545 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.79 10.56 -51.38 -0.54 -11.34 16 3 C 0.47 17.03 7.96 71.24 0.57 17.59 16 4 O -0.54 -23.73 15.73 21.96 0.35 -23.39 16 5 C -0.12 -4.20 6.13 29.85 0.18 -4.01 16 6 C 0.17 7.88 4.56 86.38 0.39 8.27 16 7 N -0.57 -27.50 2.29 -682.21 -1.56 -29.07 16 8 C -0.22 -12.21 7.13 84.03 0.60 -11.61 16 9 H 0.06 3.14 7.02 -2.91 -0.02 3.12 16 10 C -0.04 -2.13 4.92 84.86 0.42 -1.71 16 11 N -0.91 -57.99 11.52 21.65 0.25 -57.74 16 12 Si 0.94 47.51 29.61 68.60 2.03 49.54 16 13 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 15 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 16 C 0.14 5.64 2.32 44.25 0.10 5.74 16 17 H 0.09 3.07 6.11 -2.39 -0.01 3.06 16 18 C -0.14 -4.21 8.87 71.98 0.64 -3.57 16 19 C 0.48 21.06 6.91 87.66 0.61 21.66 16 20 O -0.55 -31.30 14.37 -3.04 -0.04 -31.35 16 21 N -0.63 -20.50 2.97 -818.07 -2.43 -22.93 16 22 C 0.11 2.44 4.95 86.51 0.43 2.87 16 23 C -0.11 -2.14 2.89 -10.57 -0.03 -2.17 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 C -0.14 -1.81 9.20 71.98 0.66 -1.15 16 26 C -0.10 -1.80 4.45 30.62 0.14 -1.66 16 27 C -0.10 -2.56 2.87 -10.72 -0.03 -2.59 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 C -0.14 -2.72 9.20 71.98 0.66 -2.06 16 30 C 0.12 3.55 5.72 86.36 0.49 4.05 16 31 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.12 3.55 8.14 -2.38 -0.02 3.54 16 36 H 0.02 1.15 7.88 -2.38 -0.02 1.13 16 37 H 0.06 3.46 5.50 -2.39 -0.01 3.44 16 38 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.08 1.90 7.23 -2.39 -0.02 1.89 16 41 H 0.03 1.20 7.27 -2.39 -0.02 1.19 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.09 1.91 5.21 -2.39 -0.01 1.90 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 53 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -81.66 415.07 5.95 -75.72 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.87 Total: 19.11 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: 7.02 Total: 31.44 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -3.74 Total: -109.73 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -0.24 Total: -66.07 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -81.66 5.95 -75.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475440.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.060 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds