Wall clock time and date at job start Tue Mar 31 2020 23:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00055 * 2 1 4 4 O 1.20824 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99918 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46925 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47067 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00485 * 269.99981 * 7 6 5 9 9 H 1.08003 * 120.00228 * 128.99497 * 8 7 6 10 10 C 1.38814 * 120.00033 * 309.00477 * 8 7 6 11 11 N 1.31618 * 120.00638 * 182.82961 * 10 8 7 12 12 Si 1.86808 * 119.99587 * 2.82120 * 10 8 7 13 13 H 1.48498 * 109.46673 * 94.34895 * 12 10 8 14 14 H 1.48499 * 109.47147 * 214.34551 * 12 10 8 15 15 H 1.48489 * 109.47187 * 334.34800 * 12 10 8 16 16 C 1.46503 * 120.00089 * 89.99781 * 7 6 5 17 17 H 1.09000 * 109.46990 * 5.43847 * 16 7 6 18 18 C 1.53001 * 109.46877 * 125.43154 * 16 7 6 19 19 C 1.50699 * 109.47332 * 245.43614 * 16 7 6 20 20 O 1.21274 * 120.00063 * 4.85317 * 19 16 7 21 21 N 1.34776 * 119.99720 * 184.85974 * 19 16 7 22 22 C 1.46927 * 120.63200 * 336.43351 * 21 19 16 23 23 H 1.08992 * 109.58428 * 113.82646 * 22 21 19 24 24 C 1.52995 * 109.58611 * 353.39947 * 22 21 19 25 25 C 1.53193 * 108.77547 * 233.61532 * 22 21 19 26 26 C 1.53045 * 109.31078 * 305.36323 * 25 22 21 27 27 C 1.53046 * 109.53877 * 61.36778 * 26 25 22 28 28 C 1.46928 * 120.62710 * 156.44126 * 21 19 16 29 29 H 1.09002 * 109.58612 * 246.17273 * 28 21 19 30 30 C 1.52995 * 109.58852 * 6.59730 * 28 21 19 31 31 H 1.08993 * 109.47367 * 299.99722 * 1 2 3 32 32 H 1.09002 * 109.47419 * 59.99635 * 1 2 3 33 33 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47082 * 60.00246 * 5 3 2 35 35 H 1.09001 * 109.47047 * 299.99992 * 5 3 2 36 36 H 1.08997 * 109.47374 * 60.00016 * 6 5 3 37 37 H 1.08994 * 109.47107 * 299.99954 * 6 5 3 38 38 H 0.96995 * 120.00372 * 179.97438 * 11 10 8 39 39 H 1.08999 * 109.47153 * 281.15911 * 18 16 7 40 40 H 1.08997 * 109.47011 * 41.16662 * 18 16 7 41 41 H 1.09010 * 109.46975 * 161.16666 * 18 16 7 42 42 H 1.08997 * 109.47574 * 310.33809 * 24 22 21 43 43 H 1.09000 * 109.47265 * 70.33556 * 24 22 21 44 44 H 1.09003 * 109.47343 * 190.33423 * 24 22 21 45 45 H 1.08997 * 109.49559 * 185.41559 * 25 22 21 46 46 H 1.08994 * 109.49845 * 65.31407 * 25 22 21 47 47 H 1.08997 * 109.46240 * 301.34580 * 26 25 22 48 48 H 1.09005 * 109.46085 * 181.38836 * 26 25 22 49 49 H 1.08996 * 109.49594 * 58.58179 * 27 26 25 50 50 H 1.08997 * 109.49773 * 178.68426 * 27 26 25 51 51 H 1.08998 * 109.47185 * 184.07554 * 30 28 21 52 52 H 1.08994 * 109.47365 * 304.07427 * 30 28 21 53 53 H 1.08997 * 109.47038 * 64.08164 * 30 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8187 0.0023 8 6 6.1459 2.8544 1.1887 9 1 6.9625 2.1693 1.3626 10 6 5.7885 3.7711 2.1679 11 7 6.4798 3.8434 3.2856 12 14 4.3265 4.9024 1.8992 13 1 3.1138 4.2963 2.5051 14 1 4.5939 6.2168 2.5364 15 1 4.1095 5.0934 0.4427 16 6 6.1956 2.8572 -1.2659 17 1 5.4878 2.9176 -2.0926 18 6 7.1120 4.0822 -1.2885 19 6 7.0250 1.6067 -1.4050 20 8 6.9394 0.7268 -0.5749 21 7 7.8619 1.4663 -2.4521 22 6 7.6352 2.2128 -3.6971 23 1 8.4434 2.9287 -3.8461 24 6 6.2988 2.9532 -3.6150 25 6 7.6032 1.2236 -4.8663 26 6 8.8862 0.3892 -4.8586 27 6 8.9709 -0.4072 -3.5543 28 6 9.0183 0.5636 -2.3702 29 1 9.9394 1.1450 -2.4111 30 6 8.9629 -0.2234 -1.0593 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9563 0.7806 -0.8891 35 1 3.9556 0.7809 0.8908 36 1 3.6101 3.2360 0.8910 37 1 3.6107 3.2364 -0.8889 38 1 6.2303 4.4842 3.9697 39 1 6.5255 4.9704 -1.5236 40 1 7.5800 4.2039 -0.3117 41 1 7.8833 3.9450 -2.0465 42 1 5.5201 2.2626 -3.2915 43 1 6.3798 3.7708 -2.8987 44 1 6.0445 3.3538 -4.5963 45 1 7.5319 1.7724 -5.8053 46 1 6.7406 0.5655 -4.7626 47 1 9.7495 1.0498 -4.9374 48 1 8.8771 -0.2987 -5.7041 49 1 8.0954 -1.0499 -3.4630 50 1 9.8730 -1.0189 -3.5596 51 1 9.8579 -0.8387 -0.9668 52 1 8.9111 0.4709 -0.2207 53 1 8.0804 -0.8631 -1.0566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879476115.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:34 Heat of formation + Delta-G solvation = -52.367596 kcal Electronic energy + Delta-G solvation = -33198.481395 eV Core-core repulsion = 29073.248307 eV Total energy + Delta-G solvation = -4125.233088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.95828 -41.49639 -38.76206 -37.88443 -37.47195 -35.83267 -33.92199 -33.61547 -32.83216 -30.84928 -29.67878 -28.59746 -27.06605 -26.55169 -25.60755 -24.72484 -22.54275 -22.48511 -21.79234 -21.37786 -20.07785 -18.88736 -18.40954 -17.83010 -17.66298 -17.30209 -16.88100 -16.74982 -16.40896 -16.09518 -15.37068 -15.27848 -15.02675 -14.92354 -14.80140 -14.54845 -14.18873 -14.14922 -14.09707 -13.82587 -13.61695 -13.39820 -13.32886 -13.09083 -13.00298 -12.90214 -12.77739 -12.68760 -12.61528 -12.27463 -12.10083 -11.90775 -11.84257 -11.80637 -11.61638 -11.59638 -11.45700 -11.33389 -11.28341 -10.86185 -10.67944 -10.01455 -9.22426 -8.58919 -8.07916 -5.76435 1.10244 1.34783 1.39771 1.49712 1.73235 1.91227 2.23077 2.41303 3.16708 3.23822 3.74152 3.87402 3.90590 3.93569 4.00613 4.05277 4.15367 4.23604 4.28443 4.28560 4.30039 4.34514 4.40627 4.51521 4.54676 4.56281 4.65714 4.66358 4.72812 4.78522 4.81366 4.86366 4.93473 4.95966 5.03617 5.06706 5.10141 5.14861 5.22461 5.26650 5.30947 5.31521 5.34833 5.44133 5.58169 5.63463 5.97298 6.03506 6.40272 6.66279 6.71217 7.02723 7.53939 7.66845 8.05977 9.04037 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009841 B = 0.004778 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.691487 B = 5858.688054 C = 7237.321792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.367 6.367 3 C 0.470 3.530 4 O -0.537 6.537 5 C -0.121 4.121 6 C 0.152 3.848 7 N -0.590 5.590 8 C -0.231 4.231 9 H 0.032 0.968 10 C -0.012 4.012 11 N -0.956 5.956 12 Si 0.949 3.051 13 H -0.298 1.298 14 H -0.311 1.311 15 H -0.236 1.236 16 C 0.111 3.889 17 H 0.153 0.847 18 C -0.147 4.147 19 C 0.500 3.500 20 O -0.548 6.548 21 N -0.625 5.625 22 C 0.141 3.859 23 H 0.088 0.912 24 C -0.211 4.211 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.123 4.123 28 C 0.144 3.856 29 H 0.076 0.924 30 C -0.129 4.129 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.049 0.951 50 H 0.083 0.917 51 H 0.060 0.940 52 H 0.025 0.975 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 -5.450 -21.916 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.314 3.686 4 O -0.427 6.427 5 C -0.161 4.161 6 C 0.027 3.973 7 N -0.311 5.311 8 C -0.361 4.361 9 H 0.049 0.951 10 C -0.208 4.208 11 N -0.600 5.600 12 Si 0.780 3.220 13 H -0.227 1.227 14 H -0.240 1.240 15 H -0.159 1.159 16 C 0.003 3.997 17 H 0.169 0.831 18 C -0.205 4.205 19 C 0.288 3.712 20 O -0.424 6.424 21 N -0.363 5.363 22 C 0.039 3.961 23 H 0.105 0.895 24 C -0.267 4.267 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.161 4.161 28 C 0.041 3.959 29 H 0.093 0.907 30 C -0.186 4.186 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.078 0.922 52 H 0.044 0.956 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.188 -5.546 -21.317 22.059 hybrid contribution -0.703 0.232 1.384 1.570 sum -1.891 -5.314 -19.933 20.715 Atomic orbital electron populations 1.23572 0.74861 1.05740 1.02571 1.86546 1.25182 1.32927 1.83720 1.24166 0.92363 0.81192 0.70855 1.90609 1.67872 1.37186 1.47065 1.22089 0.85605 1.02774 1.05637 1.21149 0.84483 0.91776 0.99923 1.44086 1.00097 1.85010 1.01939 1.18327 1.13416 1.11697 0.92707 0.95062 1.26278 1.00070 0.97931 0.96531 1.69918 1.42083 1.38970 1.09034 0.85806 0.79004 0.77434 0.79795 1.22661 1.24026 1.15882 1.22629 0.95769 0.91511 0.89835 0.83071 1.22068 0.99644 0.97152 1.01658 1.22166 0.80256 0.88815 0.80012 1.90658 1.65108 1.42487 1.44156 1.48425 1.27614 1.45861 1.14373 1.21323 0.98578 0.93320 0.82897 0.89466 1.23509 0.95660 1.01966 1.05583 1.21968 0.98243 0.97974 0.98029 1.21511 0.98148 0.98972 0.96558 1.21937 1.02299 0.97522 0.94381 1.21225 0.88276 0.90906 0.95486 0.90657 1.21967 1.00706 0.99782 0.96169 0.92487 0.91343 0.84854 0.87094 0.89343 0.95280 0.90540 0.93046 0.90729 0.94521 0.90026 0.92338 0.88261 0.88310 0.88225 0.92721 0.90716 0.90327 0.93234 0.89844 0.92169 0.95584 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -11.41 10.57 -51.42 -0.54 -11.95 16 3 C 0.47 17.05 7.96 71.24 0.57 17.62 16 4 O -0.54 -21.57 15.73 21.97 0.35 -21.23 16 5 C -0.12 -4.67 6.14 29.85 0.18 -4.49 16 6 C 0.15 6.48 3.19 86.38 0.28 6.75 16 7 N -0.59 -27.01 1.69 -682.21 -1.15 -28.16 16 8 C -0.23 -13.19 7.86 84.03 0.66 -12.53 16 9 H 0.03 2.12 7.21 -2.91 -0.02 2.10 16 10 C -0.01 -0.72 5.50 84.86 0.47 -0.25 16 11 N -0.96 -61.54 13.97 21.65 0.30 -61.24 16 12 Si 0.95 48.23 24.74 68.60 1.70 49.92 16 13 H -0.30 -15.62 7.08 99.48 0.70 -14.91 16 14 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 15 H -0.24 -10.72 6.29 99.48 0.63 -10.09 16 16 C 0.11 4.00 2.17 44.24 0.10 4.10 16 17 H 0.15 4.43 3.32 -16.02 -0.05 4.38 16 18 C -0.15 -4.96 7.61 71.98 0.55 -4.41 16 19 C 0.50 18.75 5.97 87.66 0.52 19.27 16 20 O -0.55 -25.59 11.12 -3.01 -0.03 -25.63 16 21 N -0.62 -17.54 2.72 -771.36 -2.10 -19.64 16 22 C 0.14 2.68 2.41 44.97 0.11 2.78 16 23 H 0.09 1.41 7.78 -2.39 -0.02 1.39 16 24 C -0.21 -3.83 6.92 71.98 0.50 -3.33 16 25 C -0.12 -1.80 5.36 30.67 0.16 -1.64 16 26 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 27 C -0.12 -2.40 5.37 30.67 0.16 -2.24 16 28 C 0.14 3.79 3.49 44.97 0.16 3.94 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 C -0.13 -4.32 7.64 71.98 0.55 -3.77 16 31 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 33 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.03 1.41 3.23 -2.39 -0.01 1.41 16 37 H 0.08 2.84 7.84 -2.39 -0.02 2.83 16 38 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 40 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 41 H 0.08 2.20 5.58 -2.38 -0.01 2.18 16 42 H 0.06 1.24 6.12 -2.39 -0.01 1.22 16 43 H 0.10 2.07 2.85 -2.97 -0.01 2.06 16 44 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.03 1.09 6.73 -2.39 -0.02 1.07 16 53 H 0.05 1.91 6.86 -2.39 -0.02 1.90 16 Total: -1.00 -79.17 389.60 5.63 -73.54 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.77 Total: 22.23 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 6.34 Total: 22.15 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -2.95 Total: -109.04 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -0.23 Total: -58.80 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.70 Total: 49.92 kcal Total: -79.17 5.63 -73.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476115.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds