Wall clock time and date at job start Wed Apr 1 2020 00:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.52374 * 2 1 4 4 C 1.53100 * 109.52190 * 239.80900 * 2 1 3 5 5 N 1.47026 * 109.41899 * 182.54042 * 4 2 1 6 6 C 1.46893 * 111.00090 * 182.98831 * 5 4 2 7 7 C 1.50695 * 109.47294 * 66.04478 * 6 5 4 8 8 H 1.08000 * 120.00373 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00368 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00323 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99775 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47368 * 90.00001 * 11 9 7 13 13 H 1.48503 * 109.47076 * 210.00175 * 11 9 7 14 14 H 1.48508 * 109.46976 * 329.99955 * 11 9 7 15 15 C 1.47178 * 110.63374 * 59.29369 * 5 4 2 16 16 C 1.52168 * 109.35489 * 302.88530 * 15 5 4 17 17 C 1.54384 * 110.46237 * 291.05209 * 16 15 5 18 18 C 1.54458 * 102.88112 * 207.45464 * 17 16 15 19 19 N 1.47077 * 107.28961 * 21.51131 * 18 17 16 20 20 C 1.34780 * 125.62532 * 180.96693 * 19 18 17 21 21 O 1.21513 * 119.99577 * 180.02562 * 20 19 18 22 22 O 1.34628 * 120.00286 * 0.02562 * 20 19 18 23 23 C 1.45202 * 117.00407 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.46867 * 59.99955 * 23 22 20 25 25 C 1.52999 * 109.47019 * 300.00782 * 23 22 20 26 26 C 1.52997 * 109.47464 * 180.02562 * 23 22 20 27 27 C 1.47573 * 108.74291 * 1.23215 * 19 18 17 28 28 O 1.41958 * 111.47459 * 54.48517 * 16 15 5 29 29 H 1.09005 * 109.47222 * 299.86870 * 1 2 3 30 30 H 1.08994 * 109.47506 * 59.87279 * 1 2 3 31 31 H 1.09006 * 109.47144 * 179.87287 * 1 2 3 32 32 H 1.09000 * 109.48226 * 302.52447 * 4 2 1 33 33 H 1.08998 * 109.47980 * 62.55081 * 4 2 1 34 34 H 1.09000 * 109.47604 * 186.05093 * 6 5 4 35 35 H 1.09009 * 109.46935 * 306.04388 * 6 5 4 36 36 H 0.96996 * 120.00351 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.49011 * 182.91709 * 15 5 4 38 38 H 1.09004 * 109.48695 * 62.84933 * 15 5 4 39 39 H 1.09004 * 110.73308 * 89.10179 * 17 16 15 40 40 H 1.09001 * 110.88523 * 325.87137 * 17 16 15 41 41 H 1.08998 * 109.87538 * 262.08555 * 18 17 16 42 42 H 1.09004 * 109.87933 * 140.93535 * 18 17 16 43 43 H 1.09001 * 109.46801 * 300.00397 * 24 23 22 44 44 H 1.09001 * 109.46998 * 59.99993 * 24 23 22 45 45 H 1.09000 * 109.47050 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47160 * 179.97438 * 25 23 22 47 47 H 1.09002 * 109.46719 * 299.99410 * 25 23 22 48 48 H 1.08993 * 109.47839 * 59.99251 * 25 23 22 49 49 H 1.09001 * 109.47375 * 300.00043 * 26 23 22 50 50 H 1.09002 * 109.46777 * 60.00599 * 26 23 22 51 51 H 1.09000 * 109.47140 * 180.02562 * 26 23 22 52 52 H 1.08999 * 110.37805 * 95.25729 * 27 19 18 53 53 H 1.09004 * 110.37220 * 217.60393 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7257 -1.2473 5 7 3.5106 -0.7777 -1.2145 6 6 4.0424 -1.4052 -2.4315 7 6 3.7411 -0.5301 -3.6207 8 1 3.2082 0.3995 -3.4860 9 6 4.1458 -0.9162 -4.8810 10 7 3.8833 -0.1523 -5.9188 11 14 5.0669 -2.5245 -5.1143 12 1 4.0954 -3.6200 -5.3614 13 1 5.9846 -2.4054 -6.2758 14 1 5.8531 -2.8266 -3.8912 15 6 3.9778 -1.4828 -0.0100 16 6 3.4224 -0.7913 1.2265 17 6 4.0730 0.5972 1.4064 18 6 3.9897 0.8212 2.9324 19 7 3.8457 -0.5006 3.5611 20 6 3.7219 -0.7318 4.8831 21 8 3.6091 -1.8702 5.2928 22 8 3.7234 0.2984 5.7498 23 6 3.5856 -0.0250 7.1586 24 6 4.7435 -0.9271 7.5904 25 6 2.2594 -0.7530 7.3874 26 6 3.6080 1.2640 7.9825 27 6 3.8654 -1.5322 2.5060 28 8 2.0086 -0.6774 1.1673 29 1 -0.3634 0.5118 0.8912 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3634 -1.0277 -0.0023 32 1 1.6423 -1.7397 -1.2673 33 1 1.7166 -0.1893 -2.1388 34 1 5.1211 -1.5286 -2.3351 35 1 3.5762 -2.3807 -2.5707 36 1 4.1683 -0.4237 -6.8053 37 1 5.0672 -1.4654 0.0219 38 1 3.6308 -2.5158 -0.0358 39 1 3.5069 1.3607 0.8728 40 1 5.1111 0.5859 1.0742 41 1 3.1247 1.4407 3.1693 42 1 4.9012 1.3028 3.2866 43 1 4.7270 -1.8454 7.0034 44 1 5.6883 -0.4086 7.4274 45 1 4.6398 -1.1703 8.6479 46 1 2.1561 -0.9961 8.4449 47 1 1.4345 -0.1103 7.0798 48 1 2.2429 -1.6712 6.8005 49 1 4.5526 1.7830 7.8196 50 1 2.7828 1.9062 7.6748 51 1 3.5050 1.0212 9.0400 52 1 4.8718 -1.9332 2.3861 53 1 3.1633 -2.3314 2.7436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880221844.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:50 Heat of formation + Delta-G solvation = -130.797976 kcal Electronic energy + Delta-G solvation = -31793.726563 eV Core-core repulsion = 27665.092478 eV Total energy + Delta-G solvation = -4128.634085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07615 -41.27399 -38.87334 -37.47430 -36.81352 -35.10437 -34.56130 -33.73360 -31.72908 -30.67170 -29.44079 -28.34756 -28.27361 -27.57380 -25.90306 -24.29184 -23.28327 -22.67510 -22.06088 -20.72792 -20.13112 -19.05279 -19.01009 -17.86850 -17.52503 -17.28619 -17.00295 -16.42973 -16.33220 -16.15248 -15.75864 -15.42141 -15.18427 -15.12189 -14.75389 -14.69394 -14.30857 -14.08305 -13.93789 -13.87436 -13.61628 -13.32795 -13.22657 -13.05268 -13.00065 -12.89812 -12.85000 -12.79498 -12.69589 -12.53821 -12.48194 -12.39572 -12.27080 -12.20509 -11.92090 -11.78398 -11.41976 -11.38303 -11.29691 -11.12547 -10.78832 -10.47690 -9.81842 -9.15486 -8.27861 -6.31012 1.01440 1.35239 1.36668 1.46677 1.72281 2.34182 2.47550 2.86281 2.94117 3.07110 3.45978 3.61840 3.73251 3.77751 3.81799 3.94873 3.96618 4.09967 4.18984 4.24124 4.34225 4.38862 4.43395 4.51406 4.57963 4.63239 4.64742 4.66284 4.71726 4.73788 4.77614 4.78094 4.85572 4.89622 4.91741 4.95024 4.96538 5.02847 5.06526 5.13307 5.15039 5.21879 5.27930 5.29883 5.35923 5.45785 5.51340 5.91112 6.17705 6.27183 6.37746 6.56235 6.74989 7.22468 7.32391 8.88182 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.002514 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.994910 B =11136.639305 C =11632.791397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 H 0.070 0.930 4 C 0.036 3.964 5 N -0.529 5.529 6 C 0.171 3.829 7 C -0.512 4.512 8 H 0.043 0.957 9 C 0.011 3.989 10 N -0.945 5.945 11 Si 0.942 3.058 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.247 1.247 15 C 0.034 3.966 16 C 0.113 3.887 17 C -0.138 4.138 18 C 0.115 3.885 19 N -0.602 5.602 20 C 0.666 3.334 21 O -0.593 6.593 22 O -0.365 6.365 23 C 0.122 3.878 24 C -0.178 4.178 25 C -0.179 4.179 26 C -0.134 4.134 27 C 0.146 3.854 28 O -0.374 6.374 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.037 0.963 35 H -0.017 1.017 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.104 0.896 52 H 0.106 0.894 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 1.525 27.085 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.093 4.093 5 N -0.253 5.253 6 C 0.045 3.955 7 C -0.551 4.551 8 H 0.061 0.939 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.170 1.170 15 C -0.095 4.095 16 C 0.072 3.928 17 C -0.176 4.176 18 C -0.007 4.007 19 N -0.342 5.342 20 C 0.421 3.579 21 O -0.484 6.484 22 O -0.279 6.279 23 C 0.086 3.914 24 C -0.236 4.236 25 C -0.237 4.237 26 C -0.191 4.191 27 C 0.024 3.976 28 O -0.294 6.294 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.001 0.999 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.122 0.878 52 H 0.124 0.876 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.387 1.631 27.368 27.420 hybrid contribution 0.040 -1.444 -1.260 1.917 sum -0.347 0.187 26.108 26.111 Atomic orbital electron populations 1.21711 0.91282 1.02994 1.03419 1.22286 0.95737 0.95420 0.82856 0.91180 1.22663 0.88328 0.99039 0.99255 1.62177 1.08472 1.52741 1.01893 1.19972 0.95480 0.92205 0.87890 1.21189 1.36283 1.06598 0.91007 0.93888 1.25778 0.96771 1.00604 0.95557 1.70030 1.48789 1.39990 0.99797 0.85794 0.79205 0.79657 0.78758 1.19791 1.20826 1.17009 1.22548 1.01683 0.95589 0.89677 1.21852 0.81938 0.95859 0.93128 1.23020 1.03258 0.97133 0.94169 1.22118 1.02665 0.83498 0.92435 1.47170 1.74637 1.10247 1.02182 1.17564 0.76161 0.82870 0.81272 1.90886 1.57075 1.22868 1.77620 1.86324 1.85887 1.36137 1.19598 1.22464 0.96377 0.97839 0.74681 1.22465 0.97298 1.00295 1.03493 1.22469 0.95807 1.01270 1.04113 1.21876 1.03657 0.94062 0.99529 1.22060 1.02638 0.89987 0.82868 1.87799 1.19930 1.78642 1.42995 0.90637 0.89943 0.92260 0.95805 0.90946 0.94530 0.99894 0.92467 0.88162 0.94683 0.89285 0.88263 0.91116 0.89424 0.92134 0.91864 0.88930 0.88850 0.92253 0.92267 0.91108 0.91377 0.87788 0.87592 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.57 71.98 0.69 -2.67 16 2 C 0.09 2.80 3.20 30.63 0.10 2.90 16 3 H 0.07 2.06 6.49 -2.39 -0.02 2.04 16 4 C 0.04 1.31 4.72 86.31 0.41 1.72 16 5 N -0.53 -20.35 4.59 -901.19 -4.13 -24.48 16 6 C 0.17 7.82 3.79 85.56 0.32 8.14 16 7 C -0.51 -28.37 9.03 25.60 0.23 -28.13 16 8 H 0.04 2.64 7.36 -2.91 -0.02 2.62 16 9 C 0.01 0.60 5.47 84.66 0.46 1.06 16 10 N -0.95 -57.63 13.96 21.45 0.30 -57.33 16 11 Si 0.94 42.85 27.47 68.60 1.88 44.74 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 15 C 0.03 1.03 4.29 85.98 0.37 1.40 16 16 C 0.11 3.03 0.84 -10.14 -0.01 3.02 16 17 C -0.14 -3.20 5.81 31.56 0.18 -3.01 16 18 C 0.11 2.43 6.90 86.76 0.60 3.02 16 19 N -0.60 -15.14 3.33 -942.42 -3.14 -18.28 16 20 C 0.67 18.30 7.93 129.79 1.03 19.33 16 21 O -0.59 -18.72 12.15 19.80 0.24 -18.48 16 22 O -0.36 -8.67 9.49 -55.38 -0.53 -9.20 16 23 C 0.12 2.23 1.13 -10.79 -0.01 2.22 16 24 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 25 C -0.18 -3.31 8.37 71.98 0.60 -2.71 16 26 C -0.13 -1.54 8.85 71.98 0.64 -0.90 16 27 C 0.15 3.63 6.09 86.63 0.53 4.16 16 28 O -0.37 -11.20 9.99 -148.96 -1.49 -12.69 16 29 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 3.04 6.79 -2.39 -0.02 3.02 16 34 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16 35 H -0.02 -0.76 7.55 -2.38 -0.02 -0.78 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.10 2.73 7.98 -2.39 -0.02 2.71 16 38 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 2.21 6.31 -2.39 -0.02 2.19 16 40 H 0.10 2.15 7.91 -2.39 -0.02 2.13 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.11 2.24 8.01 -2.39 -0.02 2.22 16 53 H 0.08 2.14 8.05 -2.38 -0.02 2.12 16 Total: -1.00 -68.73 403.73 0.69 -68.03 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.81 Total: 20.65 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.74 Total: 7.04 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.97 Total: -100.10 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.77 Total: -40.36 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.74 kcal Total: -68.73 0.69 -68.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880221844.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.764 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds