Wall clock time and date at job start Wed Apr 1 2020 00:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.52059 * 2 1 4 4 C 1.53096 * 109.52289 * 120.12565 * 2 1 3 5 5 N 1.47032 * 109.38908 * 177.43147 * 4 2 1 6 6 C 1.46901 * 110.99900 * 177.03357 * 5 4 2 7 7 C 1.50699 * 109.46967 * 58.71972 * 6 5 4 8 8 H 1.07995 * 120.00020 * 4.98670 * 7 6 5 9 9 C 1.37880 * 120.00174 * 184.98115 * 7 6 5 10 10 N 1.31516 * 119.99850 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00089 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47021 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47012 * 120.00072 * 11 9 7 14 14 H 1.48501 * 109.47039 * 239.99860 * 11 9 7 15 15 C 1.47175 * 110.68949 * 300.76140 * 5 4 2 16 16 C 1.52170 * 109.37418 * 57.07404 * 15 5 4 17 17 C 1.54382 * 110.46667 * 182.11309 * 16 15 5 18 18 C 1.54459 * 102.87442 * 276.79679 * 17 16 15 19 19 N 1.47073 * 107.29624 * 338.48420 * 18 17 16 20 20 C 1.34777 * 125.63191 * 179.00475 * 19 18 17 21 21 O 1.21511 * 120.00430 * 180.02562 * 20 19 18 22 22 O 1.34638 * 119.99783 * 0.02770 * 20 19 18 23 23 C 1.45202 * 116.99978 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.46743 * 60.00170 * 23 22 20 25 25 C 1.53004 * 109.47271 * 180.02562 * 23 22 20 26 26 C 1.52994 * 109.47368 * 300.00548 * 23 22 20 27 27 C 1.47568 * 108.74001 * 359.00986 * 19 18 17 28 28 O 1.41959 * 111.49010 * 305.59925 * 16 15 5 29 29 H 1.09003 * 109.46627 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47182 * 299.99880 * 1 2 3 31 31 H 1.09006 * 109.47186 * 60.00092 * 1 2 3 32 32 H 1.09004 * 109.48107 * 297.46918 * 4 2 1 33 33 H 1.08993 * 109.48720 * 57.51995 * 4 2 1 34 34 H 1.08997 * 109.47322 * 178.72402 * 6 5 4 35 35 H 1.09002 * 109.46875 * 298.72709 * 6 5 4 36 36 H 0.97000 * 120.00033 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.48779 * 297.10166 * 15 5 4 38 38 H 1.08998 * 109.48812 * 177.04280 * 15 5 4 39 39 H 1.08994 * 110.73474 * 35.14530 * 17 16 15 40 40 H 1.09005 * 110.73287 * 158.27614 * 17 16 15 41 41 H 1.09004 * 109.87708 * 97.91639 * 18 17 16 42 42 H 1.09006 * 109.87723 * 219.06080 * 18 17 16 43 43 H 1.09002 * 109.47233 * 60.00104 * 24 23 22 44 44 H 1.09004 * 109.47011 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47353 * 299.99610 * 24 23 22 46 46 H 1.09000 * 109.46765 * 60.00504 * 25 23 22 47 47 H 1.08995 * 109.46961 * 180.02562 * 25 23 22 48 48 H 1.09000 * 109.46860 * 300.00617 * 25 23 22 49 49 H 1.09003 * 109.47472 * 59.99489 * 26 23 22 50 50 H 1.09004 * 109.47209 * 179.97438 * 26 23 22 51 51 H 1.09000 * 109.47162 * 299.99798 * 26 23 22 52 52 H 1.09006 * 110.37453 * 264.50515 * 27 19 18 53 53 H 1.09003 * 110.38060 * 142.16028 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7242 1.2480 5 7 3.5106 -0.7765 1.2143 6 6 4.0432 -1.4030 2.4316 7 6 3.4874 -2.7976 2.5631 8 1 2.8714 -3.2097 1.7776 9 6 3.7654 -3.5475 3.6862 10 7 4.5152 -3.0455 4.6430 11 14 3.0771 -5.2764 3.8489 12 1 2.2713 -5.6036 2.6452 13 1 4.1959 -6.2450 3.9734 14 1 2.2174 -5.3552 5.0572 15 6 3.9783 -1.4818 0.0102 16 6 3.4223 -0.7919 -1.2269 17 6 3.8546 -1.5433 -2.5043 18 6 5.2694 -0.9837 -2.7707 19 7 5.3654 0.3101 -2.0779 20 6 6.4515 1.1077 -2.0510 21 8 6.4180 2.1596 -1.4437 22 8 7.5737 0.7388 -2.6970 23 6 8.7043 1.6471 -2.6255 24 6 9.1147 1.8363 -1.1637 25 6 9.8783 1.0632 -3.4140 26 6 8.3110 2.9992 -3.2238 27 6 4.0761 0.5909 -1.4171 28 8 2.0086 -0.6773 -1.1674 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7163 -0.1871 2.1390 33 1 1.6431 -1.7384 1.2689 34 1 5.1305 -1.4494 2.3705 35 1 3.7529 -0.8128 3.3008 36 1 4.7105 -3.5729 5.4333 37 1 3.6324 -2.5151 0.0367 38 1 5.0676 -1.4634 -0.0219 39 1 3.8921 -2.6179 -2.3259 40 1 3.1839 -1.3143 -3.3325 41 1 6.0196 -1.6706 -2.3788 42 1 5.4166 -0.8425 -3.8415 43 1 9.3950 0.8731 -0.7374 44 1 9.9638 2.5178 -1.1101 45 1 8.2783 2.2526 -0.6024 46 1 9.5856 0.9287 -4.4553 47 1 10.7271 1.7448 -3.3599 48 1 10.1586 0.0998 -2.9881 49 1 7.4744 3.4154 -2.6625 50 1 9.1596 3.6811 -3.1698 51 1 8.0185 2.8644 -4.2652 52 1 3.4534 1.2211 -2.0522 53 1 4.2407 1.0689 -0.4514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880221845.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:54 Heat of formation + Delta-G solvation = -135.643604 kcal Electronic energy + Delta-G solvation = -32395.715204 eV Core-core repulsion = 28266.870998 eV Total energy + Delta-G solvation = -4128.844207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11156 -41.25685 -38.87671 -37.49756 -37.01465 -35.09954 -34.51054 -33.72493 -31.57051 -30.18471 -28.79287 -28.36060 -28.27157 -27.67518 -26.19510 -24.95224 -23.01763 -22.68772 -22.27321 -20.55522 -20.25076 -19.09916 -18.66173 -17.90149 -17.55676 -17.24149 -16.94518 -16.50500 -16.26725 -16.03301 -15.90121 -15.38971 -15.30542 -14.86675 -14.77589 -14.64481 -14.27253 -14.00004 -13.82578 -13.52153 -13.41001 -13.33004 -13.29907 -13.06662 -12.95527 -12.89398 -12.85537 -12.84140 -12.74398 -12.67175 -12.50432 -12.35454 -12.27199 -12.15899 -12.02001 -11.83287 -11.81059 -11.38824 -11.20175 -11.12274 -10.66445 -10.54847 -9.80377 -9.14431 -8.20763 -6.40845 0.99321 1.33894 1.35243 1.47127 1.73035 2.33781 2.50943 2.93015 3.04519 3.12422 3.49196 3.52414 3.72398 3.76708 3.80968 3.95816 4.01993 4.13642 4.20181 4.24825 4.33535 4.43831 4.49665 4.59536 4.60989 4.62463 4.71470 4.73778 4.77121 4.77654 4.83915 4.85740 4.89287 4.89998 4.96706 4.99506 5.05796 5.10312 5.14529 5.15543 5.20920 5.24617 5.29363 5.32927 5.36079 5.45490 5.67525 5.92310 6.13142 6.20119 6.34832 6.38086 6.77853 7.23253 7.31034 8.82871 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.003486 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.164544 B = 8031.022741 C = 9336.639309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.034 3.966 5 N -0.542 5.542 6 C 0.204 3.796 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.960 3.040 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.054 3.946 16 C 0.115 3.885 17 C -0.108 4.108 18 C 0.109 3.891 19 N -0.602 5.602 20 C 0.663 3.337 21 O -0.593 6.593 22 O -0.362 6.362 23 C 0.123 3.877 24 C -0.183 4.183 25 C -0.133 4.133 26 C -0.177 4.177 27 C 0.119 3.881 28 O -0.362 6.362 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.031 0.969 34 H -0.003 1.003 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.092 0.908 51 H 0.067 0.933 52 H 0.084 0.916 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 7.082 -19.992 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.084 0.916 4 C -0.094 4.094 5 N -0.266 5.266 6 C 0.077 3.923 7 C -0.595 4.595 8 H 0.076 0.924 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.784 3.216 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.075 4.075 16 C 0.073 3.927 17 C -0.146 4.146 18 C -0.013 4.013 19 N -0.344 5.344 20 C 0.419 3.581 21 O -0.484 6.484 22 O -0.277 6.277 23 C 0.087 3.913 24 C -0.240 4.240 25 C -0.190 4.190 26 C -0.234 4.234 27 C -0.003 4.003 28 O -0.280 6.280 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.111 0.889 51 H 0.086 0.914 52 H 0.103 0.897 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.176 7.852 -19.817 21.551 hybrid contribution -0.152 -1.527 1.460 2.118 sum 3.024 6.326 -18.357 19.650 Atomic orbital electron populations 1.21721 0.90512 1.03153 1.03815 1.22391 0.96369 0.94937 0.83193 0.91587 1.22636 0.88411 0.99562 0.98827 1.62715 1.08841 1.52018 1.03018 1.19361 0.93533 0.92132 0.87245 1.21920 1.32140 1.01093 1.04300 0.92372 1.25840 0.95110 1.02483 0.95268 1.70082 1.38478 1.39035 1.08943 0.85481 0.78330 0.79411 0.78330 1.18932 1.20326 1.20262 1.22224 0.99337 0.95991 0.89915 1.21886 0.81638 0.93789 0.95349 1.22613 0.95137 1.00992 0.95818 1.22253 0.97550 0.82983 0.98523 1.47037 1.10705 1.22084 1.54547 1.17615 0.80390 0.81926 0.78178 1.90891 1.83972 1.25136 1.48434 1.86307 1.20974 1.51323 1.69091 1.22465 0.83026 0.89030 0.96799 1.22496 1.03117 1.02781 0.95592 1.21869 0.94668 1.02341 1.00074 1.22449 1.03755 0.96009 1.01169 1.22483 0.82240 0.97882 0.97687 1.87791 1.18890 1.78514 1.42829 0.92259 0.89643 0.90050 0.91117 0.95042 0.98525 0.97402 0.92536 0.94710 0.92114 0.88124 0.86951 0.90840 0.88115 0.92683 0.88700 0.92611 0.90624 0.87782 0.91586 0.92377 0.88893 0.91419 0.89742 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.57 71.98 0.69 -2.46 16 2 C 0.09 2.70 3.22 30.63 0.10 2.80 16 3 H 0.07 1.98 7.53 -2.39 -0.02 1.96 16 4 C 0.03 1.34 4.54 86.31 0.39 1.73 16 5 N -0.54 -24.04 4.49 -901.18 -4.05 -28.09 16 6 C 0.20 11.04 5.15 85.56 0.44 11.48 16 7 C -0.56 -30.92 7.63 25.60 0.20 -30.72 16 8 H 0.06 3.19 5.81 -2.91 -0.02 3.17 16 9 C 0.01 0.71 5.46 84.66 0.46 1.17 16 10 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 11 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 C 0.05 2.12 3.96 85.98 0.34 2.46 16 16 C 0.11 3.50 0.91 -10.22 -0.01 3.49 16 17 C -0.11 -2.39 6.15 31.56 0.19 -2.20 16 18 C 0.11 2.42 6.58 86.77 0.57 2.99 16 19 N -0.60 -17.76 3.27 -942.85 -3.08 -20.84 16 20 C 0.66 21.53 7.93 129.79 1.03 22.56 16 21 O -0.59 -22.35 12.15 19.81 0.24 -22.11 16 22 O -0.36 -9.99 9.49 -55.47 -0.53 -10.52 16 23 C 0.12 2.73 1.13 -10.79 -0.01 2.72 16 24 C -0.18 -4.47 8.37 71.98 0.60 -3.86 16 25 C -0.13 -1.92 8.85 71.98 0.64 -1.29 16 26 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 27 C 0.12 3.69 5.06 86.56 0.44 4.13 16 28 O -0.36 -11.08 9.98 -148.96 -1.49 -12.57 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.03 1.36 6.59 -2.39 -0.02 1.34 16 34 H 0.00 -0.20 8.13 -2.39 -0.02 -0.22 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.03 1.48 6.71 -2.39 -0.02 1.47 16 38 H 0.06 2.52 7.85 -2.39 -0.02 2.50 16 39 H 0.10 2.12 8.01 -2.39 -0.02 2.10 16 40 H 0.11 2.02 8.14 -2.38 -0.02 2.01 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.05 1.77 5.88 -2.39 -0.01 1.75 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 49 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 50 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 53 H 0.07 2.52 7.56 -2.39 -0.02 2.50 16 Total: -1.00 -70.17 404.93 0.95 -69.22 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.87 Total: 22.38 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.67 Total: 11.97 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.84 Total: -104.15 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.77 Total: -45.19 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.17 0.95 -69.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880221845.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.428 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds