Wall clock time and date at job start Wed Apr 1 2020 00:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.74492 * 2 1 4 4 C 1.53371 * 109.61076 * 239.57556 * 2 1 3 5 5 N 1.46963 * 108.63529 * 190.83041 * 4 2 1 6 6 C 1.34772 * 120.59728 * 235.20140 * 5 4 2 7 7 O 1.21291 * 119.99657 * 5.11385 * 6 5 4 8 8 C 1.50696 * 120.00305 * 185.11192 * 6 5 4 9 9 C 1.52998 * 109.57532 * 54.55482 * 8 6 5 10 10 C 1.53258 * 109.57667 * 174.81345 * 8 6 5 11 11 O 1.43365 * 108.79684 * 174.34426 * 10 8 6 12 12 C 1.42967 * 113.83473 * 302.09680 * 11 10 8 13 13 C 1.52995 * 109.47381 * 298.79911 * 12 11 10 14 14 C 1.53007 * 109.47257 * 178.79629 * 12 11 10 15 15 O 1.42966 * 109.47209 * 58.79962 * 12 11 10 16 16 C 1.43097 * 113.76846 * 301.20705 * 15 12 11 17 17 C 1.46962 * 118.81069 * 55.47708 * 5 4 2 18 18 C 1.53815 * 108.40107 * 304.48574 * 17 5 4 19 19 H 1.09005 * 109.87829 * 289.76405 * 18 17 5 20 20 C 1.53000 * 109.53478 * 169.30681 * 18 17 5 21 21 N 1.46959 * 109.61025 * 120.42780 * 2 1 3 22 22 C 1.36942 * 120.59671 * 354.99218 * 21 2 1 23 23 H 1.08006 * 119.99219 * 52.62068 * 22 21 2 24 24 C 1.38803 * 120.00456 * 232.62484 * 22 21 2 25 25 N 1.31624 * 120.00218 * 207.16813 * 24 22 21 26 26 Si 1.86798 * 120.00061 * 27.16362 * 24 22 21 27 27 H 1.48509 * 109.46977 * 95.44569 * 26 24 22 28 28 H 1.48501 * 109.47505 * 215.44716 * 26 24 22 29 29 H 1.48501 * 109.47011 * 335.44932 * 26 24 22 30 30 H 1.09005 * 109.47503 * 180.42742 * 1 2 3 31 31 H 1.08996 * 109.47589 * 300.42605 * 1 2 3 32 32 H 1.09002 * 109.47279 * 60.42685 * 1 2 3 33 33 H 1.08998 * 109.61311 * 71.08115 * 4 2 1 34 34 H 1.09004 * 109.60784 * 310.57674 * 4 2 1 35 35 H 1.09000 * 109.46729 * 54.36020 * 9 8 6 36 36 H 1.08996 * 109.47512 * 294.36132 * 9 8 6 37 37 H 1.08996 * 109.47451 * 174.35420 * 9 8 6 38 38 H 1.09012 * 109.55793 * 294.29933 * 10 8 6 39 39 H 1.09000 * 109.56140 * 54.61954 * 10 8 6 40 40 H 1.08993 * 109.47327 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46969 * 299.99984 * 13 12 11 42 42 H 1.08996 * 109.47166 * 59.99699 * 13 12 11 43 43 H 1.08998 * 109.47001 * 300.00684 * 14 12 11 44 44 H 1.09000 * 109.46914 * 60.00125 * 14 12 11 45 45 H 1.09000 * 109.46816 * 179.97438 * 14 12 11 46 46 H 1.09003 * 109.55702 * 298.13221 * 16 15 12 47 47 H 1.08996 * 109.55733 * 177.80311 * 16 15 12 48 48 H 1.09000 * 109.61166 * 64.26514 * 17 5 4 49 49 H 1.09004 * 109.61139 * 184.77893 * 17 5 4 50 50 H 1.08998 * 109.46662 * 293.71133 * 20 18 17 51 51 H 1.08995 * 109.47250 * 53.71627 * 20 18 17 52 52 H 1.09006 * 109.46833 * 173.71972 * 20 18 17 53 53 H 0.96994 * 119.99744 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0447 -0.7316 -1.2458 5 7 3.4908 -0.9488 -1.0989 6 6 4.3492 -0.5133 -2.0422 7 8 3.9412 0.1441 -2.9763 8 6 5.8158 -0.8429 -1.9363 9 6 5.9928 -2.3571 -1.8063 10 6 6.5455 -0.3464 -3.1893 11 8 7.9540 -0.5482 -3.0140 12 6 8.4929 0.1074 -1.8635 13 6 8.2885 1.6179 -1.9947 14 6 9.9884 -0.1975 -1.7563 15 8 7.8253 -0.3637 -0.6902 16 6 6.4106 -0.1489 -0.7061 17 6 3.9835 -1.6549 0.0921 18 6 3.4692 -0.9184 1.3407 19 1 3.9753 0.0421 1.4392 20 6 3.7370 -1.7697 2.5834 21 7 2.0232 -0.7011 1.1937 22 6 1.1510 -1.1445 2.1518 23 1 0.3107 -1.7628 1.8723 24 6 1.3467 -0.7993 3.4819 25 7 0.9022 -1.5865 4.4385 26 14 2.2412 0.7825 3.9143 27 1 1.2498 1.8609 4.1587 28 1 3.0556 0.5721 5.1382 29 1 3.1294 1.1723 2.7898 30 1 -0.3634 -1.0277 0.0077 31 1 -0.3634 0.5204 0.8861 32 1 -0.3634 0.5072 -0.8938 33 1 1.8539 -0.1252 -2.1312 34 1 1.5383 -1.6922 -1.3413 35 1 5.4860 -2.8544 -2.6333 36 1 5.5639 -2.6933 -0.8624 37 1 7.0546 -2.6022 -1.8307 38 1 6.1991 -0.9051 -4.0588 39 1 6.3444 0.7154 -3.3320 40 1 8.6989 2.1177 -1.1173 41 1 8.7975 1.9771 -2.8891 42 1 7.2231 1.8352 -2.0710 43 1 10.1340 -1.2737 -1.6629 44 1 10.4974 0.1616 -2.6508 45 1 10.3992 0.3027 -0.8794 46 1 6.2044 0.9204 -0.7550 47 1 5.9680 -0.5666 0.1981 48 1 3.6120 -2.6796 0.0897 49 1 5.0736 -1.6583 0.0906 50 1 3.1337 -2.6763 2.5396 51 1 4.7930 -2.0372 2.6199 52 1 3.4750 -1.2017 3.4762 53 1 1.0387 -1.3450 5.3679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456318.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:18 Heat of formation + Delta-G solvation = -92.515859 kcal Electronic energy + Delta-G solvation = -33788.845195 eV Core-core repulsion = 29661.871148 eV Total energy + Delta-G solvation = -4126.974047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.49522 -40.76578 -39.15271 -36.90329 -36.34719 -35.66200 -34.47895 -33.51073 -32.27145 -29.84745 -29.13440 -28.14430 -27.71879 -27.38725 -26.99133 -25.55367 -23.51194 -22.30406 -21.84156 -21.06869 -19.87240 -18.87007 -18.46932 -17.89520 -17.80596 -16.97241 -16.85558 -16.78107 -16.56914 -16.30626 -15.94504 -15.62089 -15.18646 -14.78593 -14.67683 -14.51923 -14.20646 -14.13332 -13.93675 -13.78821 -13.64980 -13.49618 -13.32671 -13.18932 -13.13979 -13.03626 -12.88209 -12.79894 -12.68274 -12.40339 -12.35846 -12.20450 -12.13672 -12.09271 -11.90221 -11.79536 -11.68304 -11.49466 -11.00021 -10.81482 -10.56834 -10.48124 -9.81686 -8.36830 -8.19271 -5.67138 1.31576 1.39025 1.42495 1.49819 1.83558 2.42770 2.45081 2.55423 3.00374 3.21972 3.30401 3.36999 3.44706 3.69476 3.76259 3.84727 3.95086 4.01280 4.16543 4.22957 4.30506 4.34431 4.35714 4.46159 4.49978 4.52472 4.58201 4.62567 4.67323 4.69196 4.72122 4.76658 4.78065 4.84630 4.86632 4.87691 4.92609 5.04726 5.07070 5.16020 5.22829 5.25272 5.32193 5.34818 5.56494 5.64352 5.71443 5.98866 6.10308 6.33167 6.39092 6.96830 7.08745 7.62751 8.20894 8.97094 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.004102 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.884907 B = 6824.403182 C = 7647.131928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.147 3.853 3 H 0.021 0.979 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.526 3.474 7 O -0.576 6.576 8 C -0.142 4.142 9 C -0.141 4.141 10 C 0.087 3.913 11 O -0.385 6.385 12 C 0.248 3.752 13 C -0.206 4.206 14 C -0.124 4.124 15 O -0.380 6.380 16 C 0.060 3.940 17 C 0.083 3.917 18 C 0.147 3.853 19 H 0.029 0.971 20 C -0.130 4.130 21 N -0.603 5.603 22 C -0.258 4.258 23 H 0.041 0.959 24 C 0.033 3.967 25 N -0.923 5.923 26 Si 0.901 3.099 27 H -0.305 1.305 28 H -0.296 1.296 29 H -0.252 1.252 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.056 0.944 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.121 0.879 50 H 0.056 0.944 51 H 0.077 0.923 52 H 0.035 0.965 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.287 1.676 -12.873 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.042 3.958 3 H 0.038 0.962 4 C -0.015 4.015 5 N -0.325 5.325 6 C 0.315 3.685 7 O -0.456 6.456 8 C -0.145 4.145 9 C -0.198 4.198 10 C 0.010 3.990 11 O -0.305 6.305 12 C 0.172 3.828 13 C -0.264 4.264 14 C -0.181 4.181 15 O -0.300 6.300 16 C -0.017 4.017 17 C -0.040 4.040 18 C 0.041 3.959 19 H 0.046 0.954 20 C -0.187 4.187 21 N -0.330 5.330 22 C -0.387 4.387 23 H 0.059 0.941 24 C -0.167 4.167 25 N -0.564 5.564 26 Si 0.730 3.270 27 H -0.234 1.234 28 H -0.223 1.223 29 H -0.176 1.176 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.097 0.903 49 H 0.138 0.862 50 H 0.075 0.925 51 H 0.096 0.904 52 H 0.054 0.946 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.262 1.773 -13.158 20.994 hybrid contribution -0.737 1.200 0.848 1.644 sum 15.525 2.974 -12.310 20.035 Atomic orbital electron populations 1.21577 0.93597 1.01738 1.00966 1.21082 0.94911 0.93105 0.86741 0.96172 1.22114 0.79444 1.01024 0.98916 1.48017 1.07260 1.56125 1.21101 1.20496 0.88136 0.78398 0.81505 1.90646 1.79605 1.40740 1.34621 1.21926 0.91651 1.00994 0.99972 1.22040 1.04169 0.89842 1.03727 1.22404 0.79876 1.01023 0.95658 1.88184 1.21871 1.74518 1.45961 1.23241 0.93634 0.90302 0.75578 1.22852 1.02761 0.95696 1.05052 1.21660 0.88027 1.03901 1.04502 1.88180 1.18448 1.82564 1.40842 1.23012 0.81726 0.99470 0.97478 1.23154 1.00671 0.96374 0.83815 1.21322 0.85030 0.95682 0.93894 0.95360 1.21809 1.00677 1.00099 0.96159 1.44509 1.01617 1.65706 1.21134 1.18119 1.08640 1.25859 0.86068 0.94129 1.26116 0.96590 0.97818 0.96173 1.70032 1.49570 1.36652 1.00168 0.86565 0.78963 0.83803 0.77691 1.23400 1.22269 1.17603 0.93017 0.93700 0.90952 0.89462 0.91077 0.91702 0.89919 0.90031 0.87568 0.92197 0.89421 0.89102 0.93053 0.91072 0.88815 0.89001 0.92574 0.86464 0.90303 0.86168 0.92523 0.90447 0.94625 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.18 71.98 0.59 -3.72 16 2 C 0.15 5.59 3.65 45.03 0.16 5.75 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.11 3.60 5.91 86.42 0.51 4.11 16 5 N -0.59 -18.54 2.93 -817.15 -2.40 -20.94 16 6 C 0.53 15.98 6.49 87.66 0.57 16.55 16 7 O -0.58 -20.51 15.30 -3.06 -0.05 -20.56 16 8 C -0.14 -3.48 0.50 -52.76 -0.03 -3.51 16 9 C -0.14 -3.02 7.88 71.98 0.57 -2.45 16 10 C 0.09 2.08 4.70 72.07 0.34 2.42 16 11 O -0.38 -8.69 9.79 -126.22 -1.24 -9.93 16 12 C 0.25 4.96 1.50 30.59 0.05 5.01 16 13 C -0.21 -3.66 8.11 71.98 0.58 -3.08 16 14 C -0.12 -1.78 9.21 71.98 0.66 -1.12 16 15 O -0.38 -8.79 9.98 -126.22 -1.26 -10.05 16 16 C 0.06 1.45 4.97 72.07 0.36 1.81 16 17 C 0.08 2.45 3.68 86.57 0.32 2.77 16 18 C 0.15 5.47 2.40 45.18 0.11 5.58 16 19 H 0.03 1.11 6.85 -2.38 -0.02 1.10 16 20 C -0.13 -4.96 7.73 71.98 0.56 -4.40 16 21 N -0.60 -25.84 2.20 -649.90 -1.43 -27.26 16 22 C -0.26 -13.06 7.12 84.03 0.60 -12.47 16 23 H 0.04 2.32 7.26 -2.91 -0.02 2.30 16 24 C 0.03 1.75 3.69 84.86 0.31 2.07 16 25 N -0.92 -52.64 13.97 21.65 0.30 -52.33 16 26 Si 0.90 43.14 25.33 68.60 1.74 44.88 16 27 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 28 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.25 -11.50 5.50 99.48 0.55 -10.95 16 30 H 0.05 1.90 7.42 -2.38 -0.02 1.89 16 31 H 0.04 1.78 7.75 -2.39 -0.02 1.76 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.85 6.99 -2.39 -0.02 2.83 16 34 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.70 4.68 -2.39 -0.01 1.69 16 37 H 0.08 1.70 7.49 -2.39 -0.02 1.69 16 38 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.06 1.52 6.27 -2.39 -0.01 1.50 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.07 5.12 -2.39 -0.01 1.06 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.42 6.53 -2.39 -0.02 1.41 16 47 H 0.12 2.84 4.95 -2.39 -0.01 2.83 16 48 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 49 H 0.12 2.97 2.26 -2.38 -0.01 2.96 16 50 H 0.06 2.39 7.59 -2.39 -0.02 2.37 16 51 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.03 1.55 3.60 -2.38 -0.01 1.54 16 53 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -62.47 375.65 2.68 -59.79 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.75 Total: 21.09 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.26 Total: 15.32 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -3.52 Total: -100.53 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -2.54 Total: -40.54 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.74 Total: 44.88 kcal Total: -62.47 2.68 -59.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456318.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.729 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds