Wall clock time and date at job start Wed Apr 1 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.60476 * 2 1 4 4 C 1.53370 * 109.75143 * 239.57822 * 2 1 3 5 5 N 1.46962 * 108.63711 * 190.74285 * 4 2 1 6 6 C 1.34773 * 120.59467 * 235.20075 * 5 4 2 7 7 O 1.21284 * 119.99800 * 185.23405 * 6 5 4 8 8 C 1.50694 * 120.00269 * 5.23961 * 6 5 4 9 9 C 1.53000 * 109.57442 * 57.82169 * 8 6 5 10 10 C 1.53262 * 109.57159 * 297.43812 * 8 6 5 11 11 O 1.43080 * 108.94427 * 294.71411 * 10 8 6 12 12 C 1.42965 * 113.77362 * 302.02964 * 11 10 8 13 13 C 1.53009 * 109.46990 * 298.79694 * 12 11 10 14 14 C 1.52999 * 109.47679 * 178.79677 * 12 11 10 15 15 O 1.42968 * 109.46867 * 58.79089 * 12 11 10 16 16 C 1.43086 * 113.77068 * 301.21055 * 15 12 11 17 17 C 1.46965 * 118.81131 * 55.22195 * 5 4 2 18 18 C 1.53370 * 108.63699 * 304.77811 * 17 5 4 19 19 H 1.08993 * 109.61249 * 169.17098 * 18 17 5 20 20 C 1.53005 * 109.74822 * 289.59665 * 18 17 5 21 21 N 1.46962 * 108.63711 * 49.42185 * 18 17 5 22 22 C 1.36930 * 120.59610 * 124.79888 * 21 18 17 23 23 H 1.08002 * 119.99882 * 207.13547 * 22 21 18 24 24 C 1.38812 * 120.00197 * 27.13492 * 22 21 18 25 25 N 1.31620 * 119.99923 * 19.54623 * 24 22 21 26 26 Si 1.86797 * 120.00241 * 199.55176 * 24 22 21 27 27 H 1.48498 * 109.47035 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47253 * 119.99794 * 26 24 22 29 29 H 1.48503 * 109.47102 * 239.99669 * 26 24 22 30 30 H 1.09004 * 109.47159 * 299.99531 * 1 2 3 31 31 H 1.08997 * 109.47592 * 59.99790 * 1 2 3 32 32 H 1.09004 * 109.46443 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.60797 * 310.48727 * 4 2 1 34 34 H 1.08996 * 109.61575 * 70.99763 * 4 2 1 35 35 H 1.08995 * 109.47046 * 70.98962 * 9 8 6 36 36 H 1.09004 * 109.47266 * 190.98833 * 9 8 6 37 37 H 1.08997 * 109.47290 * 310.98488 * 9 8 6 38 38 H 1.09003 * 109.56118 * 54.55679 * 10 8 6 39 39 H 1.09004 * 109.55550 * 174.87284 * 10 8 6 40 40 H 1.08999 * 109.46981 * 179.97438 * 13 12 11 41 41 H 1.08996 * 109.46680 * 299.99622 * 13 12 11 42 42 H 1.08993 * 109.47091 * 59.99614 * 13 12 11 43 43 H 1.08999 * 109.46649 * 300.00005 * 14 12 11 44 44 H 1.08996 * 109.47359 * 59.99541 * 14 12 11 45 45 H 1.08999 * 109.47430 * 180.02562 * 14 12 11 46 46 H 1.08999 * 109.55791 * 298.12576 * 16 15 12 47 47 H 1.09003 * 109.64643 * 177.85878 * 16 15 12 48 48 H 1.09000 * 109.61349 * 185.03200 * 17 5 4 49 49 H 1.09003 * 109.75395 * 64.60178 * 17 5 4 50 50 H 1.09001 * 109.47246 * 179.23066 * 20 18 17 51 51 H 1.09011 * 109.46809 * 299.22814 * 20 18 17 52 52 H 1.08994 * 109.47421 * 59.22469 * 20 18 17 53 53 H 0.97002 * 120.00341 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0483 -0.7309 -1.2447 5 7 3.4947 -0.9445 -1.0958 6 6 4.3533 -0.5072 -2.0381 7 8 5.5339 -0.7715 -1.9523 8 6 3.8465 0.3101 -3.1983 9 6 3.1427 1.5633 -2.6738 10 6 2.8635 -0.5261 -4.0249 11 8 3.5683 -1.6226 -4.6149 12 6 4.6609 -1.2248 -5.4467 13 6 4.1361 -0.3763 -6.6068 14 6 5.3601 -2.4682 -5.9998 15 8 5.5905 -0.4577 -4.6777 16 6 5.0228 0.7179 -4.0919 17 6 3.9880 -1.6438 0.0990 18 6 3.4697 -0.9129 1.3437 19 1 3.6608 -1.5184 2.2296 20 6 4.1765 0.4371 1.4823 21 7 2.0234 -0.6993 1.1948 22 6 1.1510 -1.1436 2.1522 23 1 0.1348 -1.3916 1.8834 24 6 1.5727 -1.2751 3.4681 25 7 2.6451 -0.6343 3.8827 26 14 0.6185 -2.3617 4.6506 27 1 -0.5388 -2.9661 3.9432 28 1 1.5058 -3.4385 5.1592 29 1 0.1298 -1.5438 5.7897 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.5444 -1.6928 -1.3405 34 1 1.8573 -0.1254 -2.1307 35 1 3.8823 2.2498 -2.2617 36 1 2.6107 2.0503 -3.4911 37 1 2.4336 1.2828 -1.8950 38 1 2.0733 -0.9062 -3.3774 39 1 2.4282 0.0926 -4.8097 40 1 4.9692 -0.0726 -7.2407 41 1 3.4274 -0.9612 -7.1931 42 1 3.6381 0.5095 -6.2128 43 1 5.7339 -3.0726 -5.1734 44 1 4.6514 -3.0531 -6.5861 45 1 6.1934 -2.1649 -6.6336 46 1 4.6694 1.3837 -4.8793 47 1 5.7762 1.2291 -3.4926 48 1 5.0780 -1.6411 0.1006 49 1 3.6248 -2.6715 0.1006 50 1 3.7951 0.9585 2.3603 51 1 5.2490 0.2761 1.5927 52 1 3.9891 1.0384 0.5927 53 1 2.9401 -0.7265 4.8021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456319.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:26 Heat of formation + Delta-G solvation = -93.721934 kcal Electronic energy + Delta-G solvation = -33986.164332 eV Core-core repulsion = 29859.137985 eV Total energy + Delta-G solvation = -4127.026347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.40438 -40.55726 -38.82744 -36.83915 -36.30137 -35.35747 -34.24883 -33.08503 -32.36053 -29.79068 -28.79324 -28.07867 -27.36080 -27.07187 -26.93794 -25.57011 -23.67543 -22.59738 -22.01826 -20.64635 -19.77057 -18.74489 -18.04106 -17.57514 -17.46613 -17.05631 -16.90366 -16.28447 -16.20396 -16.02125 -15.70617 -15.54187 -15.19138 -14.90309 -14.65282 -14.40792 -14.13498 -13.75884 -13.62477 -13.59479 -13.52181 -13.28141 -13.19606 -13.02707 -13.01352 -12.88664 -12.82323 -12.76716 -12.63271 -12.35652 -12.29600 -12.27116 -12.03698 -11.95137 -11.87522 -11.68824 -11.50918 -11.36736 -10.88023 -10.80395 -10.46846 -10.27808 -9.68327 -8.53745 -7.79387 -5.22129 1.47255 1.52304 1.59461 1.68817 2.03556 2.55016 2.61005 2.75775 3.26344 3.34384 3.43491 3.51276 3.73873 3.77280 3.90889 3.99468 4.10939 4.16192 4.25684 4.28168 4.36343 4.40558 4.54258 4.59863 4.60759 4.66973 4.67921 4.68449 4.73346 4.75910 4.77054 4.79073 4.81733 4.84420 4.89717 4.94959 5.07621 5.13140 5.16018 5.19620 5.23340 5.36988 5.43370 5.58273 5.72867 5.74397 5.83812 5.93529 6.28726 6.44975 6.57440 7.20264 7.25907 7.91509 8.43493 9.25311 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.003512 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.321824 B = 7969.871510 C = 8154.311674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.147 3.853 3 H 0.028 0.972 4 C 0.084 3.916 5 N -0.595 5.595 6 C 0.523 3.477 7 O -0.580 6.580 8 C -0.145 4.145 9 C -0.156 4.156 10 C 0.051 3.949 11 O -0.404 6.404 12 C 0.246 3.754 13 C -0.196 4.196 14 C -0.128 4.128 15 O -0.397 6.397 16 C 0.082 3.918 17 C 0.107 3.893 18 C 0.183 3.817 19 H 0.070 0.930 20 C -0.119 4.119 21 N -0.593 5.593 22 C -0.248 4.248 23 H 0.080 0.920 24 C -0.047 4.047 25 N -0.923 5.923 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.300 1.300 29 H -0.298 1.298 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.028 0.972 52 H 0.030 0.970 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 4.245 -22.654 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.041 3.959 3 H 0.045 0.955 4 C -0.039 4.039 5 N -0.326 5.326 6 C 0.312 3.688 7 O -0.460 6.460 8 C -0.149 4.149 9 C -0.213 4.213 10 C -0.025 4.025 11 O -0.325 6.325 12 C 0.170 3.830 13 C -0.253 4.253 14 C -0.185 4.185 15 O -0.318 6.318 16 C 0.005 3.995 17 C -0.018 4.018 18 C 0.075 3.925 19 H 0.088 0.912 20 C -0.178 4.178 21 N -0.316 5.316 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.243 4.243 25 N -0.569 5.569 26 Si 0.783 3.217 27 H -0.191 1.191 28 H -0.227 1.227 29 H -0.226 1.226 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.047 0.953 52 H 0.049 0.951 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.539 3.840 -22.411 22.790 hybrid contribution 0.009 -0.421 1.791 1.840 sum -1.529 3.420 -20.620 20.958 Atomic orbital electron populations 1.21733 0.93260 1.01918 1.01916 1.21066 0.94884 0.93483 0.86486 0.95474 1.22979 0.79106 1.01496 1.00349 1.47905 1.07781 1.56558 1.20326 1.20772 0.85486 0.79311 0.83242 1.90639 1.18510 1.59412 1.77451 1.22116 0.99969 0.98179 0.94634 1.22184 1.01211 0.94200 1.03662 1.23395 0.93023 0.89129 0.96906 1.88165 1.45418 1.33432 1.65452 1.23217 0.81011 0.92393 0.86371 1.22777 1.03550 1.01052 0.97956 1.21650 1.01363 0.94656 1.00852 1.88216 1.37450 1.37981 1.68179 1.22585 0.94381 0.87228 0.95284 1.22047 0.98506 0.95254 0.85976 1.20516 0.83529 0.94524 0.93909 0.91229 1.21740 0.97422 0.99068 0.99557 1.44345 1.01495 1.65280 1.20512 1.19515 0.95385 1.35758 0.87174 0.90240 1.25612 0.99348 1.01103 0.98218 1.70180 1.27950 1.43129 1.15686 0.85425 0.78374 0.78691 0.79208 1.19081 1.22715 1.22596 0.93641 0.89473 0.92846 0.91630 0.85601 0.91903 0.87018 0.90403 0.86737 0.87712 0.89501 0.89130 0.90610 0.93756 0.88581 0.88914 0.88406 0.89765 0.91693 0.93085 0.93478 0.95335 0.95111 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 7.94 71.98 0.57 -3.36 16 2 C 0.15 5.23 2.92 45.03 0.13 5.36 16 3 H 0.03 1.02 6.45 -2.38 -0.02 1.00 16 4 C 0.08 2.52 3.58 86.42 0.31 2.83 16 5 N -0.59 -21.61 2.60 -818.02 -2.13 -23.73 16 6 C 0.52 18.78 6.14 87.66 0.54 19.32 16 7 O -0.58 -25.93 14.83 11.36 0.17 -25.76 16 8 C -0.15 -3.55 0.51 -52.76 -0.03 -3.58 16 9 C -0.16 -2.92 8.11 71.98 0.58 -2.33 16 10 C 0.05 1.05 4.89 72.07 0.35 1.40 16 11 O -0.40 -10.60 10.10 -126.22 -1.28 -11.88 16 12 C 0.25 5.63 1.50 30.60 0.05 5.68 16 13 C -0.20 -2.70 8.11 71.99 0.58 -2.11 16 14 C -0.13 -2.64 9.21 71.98 0.66 -1.98 16 15 O -0.40 -11.52 9.55 -120.59 -1.15 -12.68 16 16 C 0.08 1.96 4.80 72.07 0.35 2.31 16 17 C 0.11 4.57 5.96 86.41 0.51 5.08 16 18 C 0.18 8.63 2.34 45.03 0.11 8.74 16 19 H 0.07 3.81 5.98 -2.39 -0.01 3.80 16 20 C -0.12 -5.51 8.96 71.98 0.65 -4.86 16 21 N -0.59 -27.20 2.69 -650.70 -1.75 -28.95 16 22 C -0.25 -12.51 8.62 84.03 0.72 -11.78 16 23 H 0.08 3.84 6.17 -2.91 -0.02 3.82 16 24 C -0.05 -2.50 4.86 84.86 0.41 -2.09 16 25 N -0.92 -52.23 10.23 21.65 0.22 -52.01 16 26 Si 0.95 43.71 29.60 68.60 2.03 45.74 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 30 H 0.04 1.57 7.68 -2.38 -0.02 1.55 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.65 7.36 -2.38 -0.02 1.64 16 33 H 0.07 2.01 8.12 -2.38 -0.02 1.99 16 34 H 0.13 2.78 2.76 -2.39 -0.01 2.77 16 35 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 36 H 0.11 1.14 8.08 -2.39 -0.02 1.12 16 37 H 0.08 1.65 3.66 -2.39 -0.01 1.65 16 38 H 0.12 2.31 4.76 -2.39 -0.01 2.30 16 39 H 0.11 1.32 6.50 -2.39 -0.02 1.30 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.85 5.11 -2.39 -0.01 0.84 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.10 1.53 6.53 -2.39 -0.02 1.51 16 47 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 48 H 0.06 2.93 7.00 -2.39 -0.02 2.92 16 49 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.05 2.43 7.23 -2.39 -0.02 2.41 16 51 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 52 H 0.03 1.32 7.03 -2.39 -0.02 1.30 16 53 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -71.83 379.35 3.53 -68.30 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.91 Total: 22.36 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.50 Total: 18.61 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.66 Total: -104.69 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -2.26 Total: -50.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.83 3.53 -68.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456319.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.425 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds