Wall clock time and date at job start Wed Apr 1 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.60582 * 2 1 4 4 C 1.53367 * 109.61048 * 120.33798 * 2 1 3 5 5 N 1.46959 * 108.63553 * 169.34240 * 4 2 1 6 6 C 1.34784 * 120.59758 * 124.75383 * 5 4 2 7 7 O 1.21277 * 120.00512 * 175.23218 * 6 5 4 8 8 C 1.50701 * 119.99517 * 355.23249 * 6 5 4 9 9 C 1.53002 * 109.57755 * 62.07168 * 8 6 5 10 10 C 1.53266 * 109.57548 * 301.68977 * 8 6 5 11 11 O 1.43090 * 108.93823 * 294.71495 * 10 8 6 12 12 C 1.42971 * 113.77163 * 302.02710 * 11 10 8 13 13 C 1.52990 * 109.47358 * 298.79841 * 12 11 10 14 14 C 1.53004 * 109.47180 * 178.79632 * 12 11 10 15 15 O 1.42969 * 109.46688 * 58.80005 * 12 11 10 16 16 C 1.43085 * 113.76967 * 301.20158 * 15 12 11 17 17 C 1.46966 * 118.81387 * 304.77382 * 5 4 2 18 18 C 1.53373 * 108.63202 * 55.22796 * 17 5 4 19 19 H 1.08994 * 109.61002 * 190.83277 * 18 17 5 20 20 C 1.52996 * 109.61053 * 70.49359 * 18 17 5 21 21 N 1.46955 * 109.75378 * 239.57414 * 2 1 3 22 22 C 1.36936 * 120.59476 * 4.91993 * 21 2 1 23 23 H 1.08004 * 120.00085 * 30.26481 * 22 21 2 24 24 C 1.38817 * 120.00135 * 210.26567 * 22 21 2 25 25 N 1.31615 * 120.00022 * 19.13485 * 24 22 21 26 26 Si 1.86805 * 119.99922 * 199.12676 * 24 22 21 27 27 H 1.48495 * 109.46656 * 94.99227 * 26 24 22 28 28 H 1.48503 * 109.46922 * 214.99086 * 26 24 22 29 29 H 1.48501 * 109.47175 * 334.99163 * 26 24 22 30 30 H 1.09002 * 109.47695 * 299.99839 * 1 2 3 31 31 H 1.09002 * 109.47516 * 60.00119 * 1 2 3 32 32 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.61088 * 289.09074 * 4 2 1 34 34 H 1.09004 * 109.61124 * 49.42758 * 4 2 1 35 35 H 1.08997 * 109.46680 * 70.45486 * 9 8 6 36 36 H 1.08999 * 109.47377 * 190.46003 * 9 8 6 37 37 H 1.09006 * 109.47001 * 310.46063 * 9 8 6 38 38 H 1.08990 * 109.56227 * 54.55536 * 10 8 6 39 39 H 1.08998 * 109.55558 * 174.88196 * 10 8 6 40 40 H 1.08998 * 109.47045 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47201 * 299.99901 * 13 12 11 42 42 H 1.08997 * 109.47384 * 59.99637 * 13 12 11 43 43 H 1.09007 * 109.47040 * 300.00675 * 14 12 11 44 44 H 1.08998 * 109.46963 * 60.00353 * 14 12 11 45 45 H 1.08998 * 109.47122 * 180.02562 * 14 12 11 46 46 H 1.09003 * 109.56149 * 298.13699 * 16 15 12 47 47 H 1.09003 * 109.64918 * 177.86473 * 16 15 12 48 48 H 1.09006 * 109.61019 * 174.96849 * 17 5 4 49 49 H 1.08994 * 109.60966 * 295.31067 * 17 5 4 50 50 H 1.08996 * 109.47450 * 65.05731 * 20 18 17 51 51 H 1.09003 * 109.47090 * 185.06141 * 20 18 17 52 52 H 1.09005 * 109.46825 * 305.05332 * 20 18 17 53 53 H 0.97006 * 120.00486 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0447 -0.7297 1.2469 5 7 3.4914 -0.9434 1.1022 6 6 4.3476 -0.5045 2.0461 7 8 5.5296 -0.7616 1.9596 8 6 3.8359 0.3059 3.2091 9 6 2.8501 -0.5334 4.0245 10 6 3.1342 1.5651 2.6885 11 8 4.0991 2.4005 2.0416 12 6 5.1871 2.7847 2.8858 13 6 4.6521 3.5858 4.0744 14 6 6.1699 3.6466 2.0908 15 8 5.8566 1.6148 3.3623 16 6 5.0111 0.7260 4.0987 17 6 3.9882 -1.6440 -0.0905 18 6 3.4735 -0.9142 -1.3374 19 1 3.6669 -1.5206 -2.2221 20 6 4.1842 0.4339 -1.4734 21 7 2.0266 -0.7004 -1.1926 22 6 1.1569 -1.1464 -2.1517 23 1 0.2314 -0.6187 -2.3289 24 6 1.4648 -2.2769 -2.8962 25 7 2.3676 -3.1281 -2.4574 26 14 0.5974 -2.5901 -4.5207 27 1 1.4272 -2.0642 -5.6342 28 1 0.3956 -4.0504 -4.7006 29 1 -0.7201 -1.9049 -4.5186 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8511 -0.1233 2.1317 34 1 1.5384 -1.6902 1.3438 35 1 3.3909 -1.3210 4.5492 36 1 2.3428 0.1038 4.7489 37 1 2.1144 -0.9809 3.3562 38 1 2.3596 1.2828 1.9756 39 1 2.6857 2.1042 3.5228 40 1 5.4816 3.8783 4.7182 41 1 4.1417 4.4777 3.7111 42 1 3.9520 2.9718 4.6408 43 1 6.5510 3.0758 1.2439 44 1 5.6595 4.5385 1.7275 45 1 6.9996 3.9391 2.7343 46 1 4.6335 1.2334 4.9865 47 1 5.5775 -0.1566 4.3960 48 1 5.0782 -1.6412 -0.0889 49 1 3.6249 -2.6716 -0.0889 50 1 5.2458 0.2681 -1.6565 51 1 3.7540 0.9890 -2.3070 52 1 4.0590 1.0050 -0.5534 53 1 2.5831 -3.9179 -2.9778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456320.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:34 Heat of formation + Delta-G solvation = -95.340452 kcal Electronic energy + Delta-G solvation = -34468.837116 eV Core-core repulsion = 30341.740585 eV Total energy + Delta-G solvation = -4127.096531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.38934 -40.49261 -38.83283 -36.81154 -36.27472 -35.29606 -34.21315 -33.21561 -32.36159 -29.74677 -28.79419 -28.03294 -27.46545 -27.00514 -26.92445 -25.57000 -23.62170 -22.62716 -21.93951 -20.59853 -19.73247 -18.73106 -18.15531 -17.55947 -17.41906 -16.95049 -16.70599 -16.67087 -16.15951 -15.94445 -15.68229 -15.34427 -15.17731 -14.86723 -14.80925 -14.44534 -14.12357 -13.73341 -13.65186 -13.51274 -13.47740 -13.29510 -13.19016 -13.02470 -13.01163 -12.93873 -12.83675 -12.71972 -12.69084 -12.44948 -12.33531 -12.27145 -12.02506 -11.93442 -11.78401 -11.71291 -11.52165 -11.30916 -10.86035 -10.77836 -10.55880 -10.23459 -9.63566 -8.47466 -7.81073 -5.26614 1.48045 1.52215 1.58368 1.70136 2.09757 2.55077 2.63491 2.77428 3.27925 3.33082 3.44443 3.51145 3.75192 3.79656 3.92762 4.00539 4.15391 4.18489 4.28427 4.29926 4.37192 4.45478 4.53022 4.58334 4.63203 4.67365 4.68529 4.73119 4.74529 4.74849 4.76221 4.79232 4.82403 4.86147 4.94002 4.98792 5.10157 5.12505 5.15875 5.19927 5.22465 5.31316 5.41018 5.45010 5.65214 5.75843 5.85337 5.96670 6.30919 6.46469 6.63967 7.19301 7.28627 7.90229 8.44554 9.23415 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003955 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.984350 B = 7078.819833 C = 7148.214078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 H 0.036 0.964 4 C 0.082 3.918 5 N -0.594 5.594 6 C 0.522 3.478 7 O -0.585 6.585 8 C -0.146 4.146 9 C -0.154 4.154 10 C 0.051 3.949 11 O -0.402 6.402 12 C 0.247 3.753 13 C -0.195 4.195 14 C -0.128 4.128 15 O -0.399 6.399 16 C 0.082 3.918 17 C 0.127 3.873 18 C 0.172 3.828 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.590 5.590 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.043 4.043 25 N -0.922 5.922 26 Si 0.954 3.046 27 H -0.296 1.296 28 H -0.300 1.300 29 H -0.267 1.267 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.125 0.875 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.038 0.962 51 H 0.043 0.957 52 H 0.042 0.958 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 13.123 17.300 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.039 3.961 3 H 0.054 0.946 4 C -0.041 4.041 5 N -0.325 5.325 6 C 0.311 3.689 7 O -0.465 6.465 8 C -0.150 4.150 9 C -0.211 4.211 10 C -0.025 4.025 11 O -0.323 6.323 12 C 0.171 3.829 13 C -0.252 4.252 14 C -0.185 4.185 15 O -0.320 6.320 16 C 0.006 3.994 17 C 0.003 3.997 18 C 0.064 3.936 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.312 5.312 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.239 4.239 25 N -0.568 5.568 26 Si 0.784 3.216 27 H -0.223 1.223 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.063 0.937 52 H 0.061 0.939 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.500 12.876 16.944 21.287 hybrid contribution -0.089 -1.161 -1.336 1.772 sum -0.589 11.715 15.608 19.524 Atomic orbital electron populations 1.21719 0.93270 1.01739 1.01883 1.21174 0.94835 0.93938 0.86113 0.94634 1.22989 0.79271 1.01200 1.00653 1.47966 1.07736 1.56223 1.20579 1.20794 0.85443 0.79048 0.83642 1.90623 1.18227 1.59666 1.77969 1.22142 1.00174 0.97573 0.95142 1.22160 0.98040 1.00367 1.00497 1.23373 0.90897 0.88073 1.00140 1.88203 1.35244 1.67751 1.41084 1.23189 0.84737 0.85113 0.89882 1.22764 1.03322 1.01402 0.97738 1.21646 0.98421 0.98569 0.99905 1.88208 1.37461 1.33940 1.72352 1.22601 0.90269 0.93940 0.92618 1.21681 0.97100 0.95402 0.85538 1.20622 0.83530 0.93129 0.96301 0.90517 1.22024 0.98435 0.99194 1.00273 1.44271 1.00883 1.66069 1.20000 1.19397 1.02543 1.04787 1.10977 0.90857 1.25640 1.00354 0.95323 1.02554 1.70127 1.37156 1.11657 1.37839 0.85452 0.78738 0.76157 0.81265 1.22318 1.22766 1.19164 0.89624 0.93145 0.93469 0.85772 0.92522 0.91316 0.87045 0.90455 0.87243 0.87812 0.89422 0.89295 0.90530 0.93958 0.88787 0.88805 0.88348 0.89476 0.92922 0.93336 0.94299 0.93744 0.93904 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.10 71.98 0.58 -3.46 16 2 C 0.15 5.38 2.93 45.03 0.13 5.52 16 3 H 0.04 1.34 6.72 -2.39 -0.02 1.32 16 4 C 0.08 2.71 3.51 86.42 0.30 3.01 16 5 N -0.59 -23.24 2.53 -818.01 -2.07 -25.31 16 6 C 0.52 19.61 6.12 87.66 0.54 20.14 16 7 O -0.58 -27.03 14.89 9.46 0.14 -26.89 16 8 C -0.15 -3.72 0.51 -52.75 -0.03 -3.75 16 9 C -0.15 -2.73 8.11 71.98 0.58 -2.15 16 10 C 0.05 1.17 4.90 72.07 0.35 1.52 16 11 O -0.40 -11.62 10.10 -126.22 -1.28 -12.90 16 12 C 0.25 6.10 1.50 30.59 0.05 6.14 16 13 C -0.19 -2.95 8.11 71.98 0.58 -2.37 16 14 C -0.13 -2.95 9.21 71.98 0.66 -2.28 16 15 O -0.40 -12.03 9.65 -121.08 -1.17 -13.20 16 16 C 0.08 2.01 4.80 72.07 0.35 2.36 16 17 C 0.13 5.98 5.96 86.42 0.51 6.49 16 18 C 0.17 8.31 2.45 45.03 0.11 8.42 16 19 H 0.08 4.28 5.68 -2.39 -0.01 4.27 16 20 C -0.14 -6.20 9.09 71.98 0.65 -5.54 16 21 N -0.59 -27.59 2.68 -650.73 -1.74 -29.33 16 22 C -0.25 -12.58 8.51 84.03 0.72 -11.86 16 23 H 0.07 3.62 6.33 -2.91 -0.02 3.60 16 24 C -0.04 -2.27 4.89 84.86 0.42 -1.85 16 25 N -0.92 -52.14 11.13 21.65 0.24 -51.90 16 26 Si 0.95 43.80 29.60 68.60 2.03 45.83 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.68 7.02 -2.39 -0.02 1.66 16 32 H 0.05 1.65 7.90 -2.39 -0.02 1.63 16 33 H 0.13 3.01 2.75 -2.39 -0.01 3.00 16 34 H 0.06 2.02 8.12 -2.38 -0.02 2.00 16 35 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 36 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.08 1.50 4.78 -2.38 -0.01 1.49 16 38 H 0.11 2.66 3.78 -2.39 -0.01 2.65 16 39 H 0.10 1.51 6.50 -2.39 -0.02 1.49 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 0.94 5.11 -2.39 -0.01 0.93 16 43 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.10 1.56 6.53 -2.39 -0.02 1.54 16 47 H 0.09 2.35 7.92 -2.39 -0.02 2.34 16 48 H 0.05 2.61 6.99 -2.38 -0.02 2.59 16 49 H 0.05 2.54 8.01 -2.39 -0.02 2.52 16 50 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.04 1.88 7.16 -2.38 -0.02 1.86 16 53 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 Total: -1.00 -71.79 381.57 3.58 -68.21 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.91 Total: 25.13 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.51 Total: 20.35 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.57 Total: -106.54 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -2.30 Total: -52.98 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.79 3.58 -68.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456320.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.128 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds