Wall clock time and date at job start Wed Apr 1 2020 00:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 110.50311 * 2 1 4 4 C 1.54672 * 110.55641 * 237.26557 * 2 1 3 5 5 H 1.08998 * 110.36052 * 146.43626 * 4 2 1 6 6 C 1.52992 * 110.36852 * 24.10590 * 4 2 1 7 7 O 1.44495 * 104.82966 * 265.26508 * 4 2 1 8 8 C 1.44610 * 105.41249 * 320.00242 * 7 4 2 9 9 C 1.53702 * 104.64572 * 39.76280 * 8 7 4 10 10 C 1.53635 * 110.48869 * 95.56466 * 9 8 7 11 11 C 1.55480 * 101.99385 * 143.16250 * 10 9 8 12 12 C 1.55017 * 101.02781 * 326.50106 * 11 10 9 13 13 H 1.08998 * 110.30231 * 277.08560 * 12 11 10 14 14 C 1.53003 * 110.30528 * 155.03051 * 12 11 10 15 15 N 1.46500 * 109.47311 * 179.97438 * 14 12 11 16 16 C 1.34774 * 120.00289 * 180.02562 * 15 14 12 17 17 O 1.21589 * 119.99321 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00460 * 180.02562 * 16 15 14 19 19 C 1.46490 * 120.00297 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47076 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47297 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47521 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00097 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00174 * 180.02562 * 22 21 20 25 25 N 1.31519 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99921 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47460 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47089 * 120.00135 * 26 24 22 29 29 H 1.48500 * 109.47335 * 239.99855 * 26 24 22 30 30 O 1.42362 * 111.29946 * 216.18375 * 9 8 7 31 31 H 1.09000 * 109.47314 * 174.93753 * 1 2 3 32 32 H 1.09007 * 109.46744 * 294.93374 * 1 2 3 33 33 H 1.08995 * 109.46794 * 54.93619 * 1 2 3 34 34 H 1.09003 * 109.47033 * 60.00646 * 6 4 2 35 35 H 1.09006 * 109.47258 * 179.97438 * 6 4 2 36 36 H 1.09000 * 109.47600 * 299.99771 * 6 4 2 37 37 H 1.08998 * 110.40363 * 158.55672 * 8 7 4 38 38 H 1.09000 * 110.40062 * 280.85246 * 8 7 4 39 39 H 1.09000 * 110.92807 * 261.34454 * 10 9 8 40 40 H 1.09002 * 110.92548 * 24.95108 * 10 9 8 41 41 H 1.09003 * 111.10588 * 84.44438 * 11 10 9 42 42 H 1.09005 * 111.11087 * 208.51517 * 11 10 9 43 43 H 1.08995 * 109.46824 * 300.00392 * 14 12 11 44 44 H 1.09005 * 109.46769 * 59.99740 * 14 12 11 45 45 H 0.97006 * 119.99710 * 0.02562 * 15 14 12 46 46 H 0.97006 * 119.99539 * 0.02562 * 18 16 15 47 47 H 1.08999 * 109.47420 * 300.00207 * 19 18 16 48 48 H 1.09010 * 109.46916 * 60.00179 * 19 18 16 49 49 H 1.09000 * 109.47354 * 299.99922 * 20 19 18 50 50 H 1.08997 * 109.47156 * 60.00135 * 20 19 18 51 51 H 1.08999 * 109.47217 * 300.00444 * 21 20 19 52 52 H 1.09006 * 109.47281 * 59.99973 * 21 20 19 53 53 H 0.96994 * 119.99801 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9118 1.0209 0.0000 4 6 2.0732 -0.7831 -1.2182 5 1 3.0036 -0.3382 -1.5709 6 6 1.0343 -0.8086 -2.3411 7 8 2.3110 -2.1195 -0.7227 8 6 2.8690 -1.9453 0.6000 9 6 2.0701 -0.7818 1.2087 10 6 0.9108 -1.3151 2.0643 11 6 0.8789 -0.2950 3.2371 12 6 2.3846 0.0479 3.3730 13 1 2.8914 -0.7065 3.9747 14 6 2.5594 1.4321 4.0009 15 7 3.9872 1.7370 4.1212 16 6 4.3833 2.9112 4.6512 17 8 3.5555 3.7172 5.0299 18 7 5.6969 3.1919 4.7614 19 6 6.1273 4.4684 5.3369 20 6 7.6559 4.5338 5.3469 21 6 8.1055 5.8667 5.9486 22 6 9.6111 5.9314 5.9578 23 1 10.1894 5.1047 5.5726 24 6 10.2502 7.0460 6.4580 25 7 9.5459 8.0530 6.9266 26 14 12.1164 7.1258 6.4700 27 1 12.6692 5.8748 5.8913 28 1 12.5675 8.2864 5.6609 29 1 12.5964 7.2799 7.8669 30 8 2.8954 0.0396 2.0277 31 1 -0.3634 -1.0236 -0.0907 32 1 -0.3633 0.4333 0.9320 33 1 -0.3633 0.5904 -0.8411 34 1 0.8060 0.2121 -2.6481 35 1 1.4318 -1.3629 -3.1914 36 1 0.1252 -1.2927 -1.9842 37 1 2.7331 -2.8503 1.1919 38 1 3.9266 -1.6896 0.5355 39 1 -0.0255 -1.2966 1.5064 40 1 1.1253 -2.3202 2.4275 41 1 0.2973 0.5884 2.9733 42 1 0.4968 -0.7558 4.1481 43 1 2.0795 2.1804 3.3702 44 1 2.1013 1.4428 4.9900 45 1 4.6476 1.0938 3.8193 46 1 6.3573 2.5490 4.4589 47 1 5.7321 5.2888 4.7379 48 1 5.7538 4.5511 6.3577 49 1 8.0508 3.7134 5.9462 50 1 8.0297 4.4509 4.3263 51 1 7.7106 6.6874 5.3497 52 1 7.7317 5.9492 6.9692 53 1 9.9955 8.8369 7.2789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124124.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:28 Heat of formation + Delta-G solvation = -155.416698 kcal Electronic energy + Delta-G solvation = -29840.549091 eV Core-core repulsion = 25710.847459 eV Total energy + Delta-G solvation = -4129.701632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05970 -40.99426 -39.22891 -37.09509 -35.81862 -35.18269 -34.82774 -33.29967 -33.06526 -32.09261 -29.36052 -28.59747 -27.81351 -26.11000 -25.15132 -24.15239 -22.63338 -22.29671 -21.80290 -21.69567 -20.44680 -19.27708 -18.54829 -18.03441 -17.75597 -17.32339 -17.01153 -16.76834 -16.49697 -16.29534 -15.79589 -15.68219 -15.44588 -15.26180 -15.05772 -14.42577 -14.27673 -14.14292 -13.98209 -13.84495 -13.72553 -13.50273 -13.35127 -13.03948 -12.90230 -12.77836 -12.69446 -12.63113 -12.54538 -12.37092 -12.32434 -11.96034 -11.80095 -11.67324 -11.66116 -11.50559 -11.36079 -11.29240 -11.12646 -10.82114 -10.55766 -10.40740 -10.38613 -9.76995 -8.19271 -6.30644 1.41754 1.41983 1.55213 1.69367 2.13650 2.42015 2.50283 2.93318 3.14412 3.32094 3.36830 3.49741 3.63330 3.75141 3.84862 4.00268 4.10076 4.16767 4.22602 4.24184 4.31264 4.35251 4.40768 4.54278 4.56555 4.59303 4.63305 4.65595 4.69541 4.83041 4.85451 4.91802 4.96242 4.99070 4.99375 5.00595 5.05287 5.12781 5.17132 5.20432 5.22186 5.39315 5.44515 5.48181 5.54934 5.71543 5.75389 5.84746 5.99219 6.11353 6.23146 6.86727 7.09638 7.38793 7.56891 8.93062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.001645 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.441462 B =17014.691814 C =17719.211611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.079 0.921 4 C 0.069 3.931 5 H 0.060 0.940 6 C -0.145 4.145 7 O -0.383 6.383 8 C 0.040 3.960 9 C 0.077 3.923 10 C -0.150 4.150 11 C -0.142 4.142 12 C 0.072 3.928 13 H 0.096 0.904 14 C 0.143 3.857 15 N -0.729 5.729 16 C 0.697 3.303 17 O -0.642 6.642 18 N -0.731 5.731 19 C 0.150 3.850 20 C -0.100 4.100 21 C 0.023 3.977 22 C -0.540 4.540 23 H 0.066 0.934 24 C -0.005 4.005 25 N -0.935 5.935 26 Si 0.968 3.032 27 H -0.259 1.259 28 H -0.280 1.280 29 H -0.279 1.279 30 O -0.373 6.373 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.411 0.589 46 H 0.411 0.589 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.068 0.932 50 H 0.066 0.934 51 H -0.008 1.008 52 H -0.006 1.006 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.611 -26.620 -15.384 37.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 H 0.098 0.902 4 C 0.011 3.989 5 H 0.078 0.922 6 C -0.202 4.202 7 O -0.303 6.303 8 C -0.037 4.037 9 C 0.037 3.963 10 C -0.187 4.187 11 C -0.180 4.180 12 C 0.014 3.986 13 H 0.114 0.886 14 C 0.018 3.982 15 N -0.385 5.385 16 C 0.396 3.604 17 O -0.524 6.524 18 N -0.386 5.386 19 C 0.025 3.975 20 C -0.138 4.138 21 C -0.015 4.015 22 C -0.578 4.578 23 H 0.085 0.915 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.793 3.207 27 H -0.182 1.182 28 H -0.206 1.206 29 H -0.205 1.205 30 O -0.292 6.292 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.247 0.753 46 H 0.247 0.753 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.010 0.990 52 H 0.012 0.988 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.215 -25.826 -15.160 37.287 hybrid contribution 1.645 0.395 0.134 1.697 sum -20.570 -25.431 -15.027 35.995 Atomic orbital electron populations 1.22015 0.92367 1.02603 1.02741 1.22645 0.98216 0.99878 0.93833 0.90237 1.23145 0.98375 0.82547 0.94795 0.92169 1.21888 0.98430 1.03283 0.96599 1.89163 1.83642 1.26850 1.30598 1.23705 0.97316 0.98701 0.83949 1.22893 0.91153 0.90179 0.92101 1.23470 0.99631 0.99669 0.95887 1.23303 0.94094 1.00150 1.00446 1.23387 0.95878 0.95450 0.83853 0.88606 1.21415 0.80379 0.95690 1.00693 1.44865 1.09100 1.17875 1.66656 1.16172 0.82871 0.82565 0.78755 1.90885 1.53197 1.50427 1.57859 1.45032 1.05337 1.21131 1.67148 1.21071 0.95212 0.84039 0.97153 1.21588 0.91799 0.99013 1.01425 1.18956 0.95350 0.92559 0.94654 1.21708 0.92961 1.02708 1.40405 0.91539 1.26038 1.03908 0.95358 0.94917 1.70122 1.37527 1.07368 1.42482 0.85350 0.79086 0.78474 0.77814 1.18234 1.20614 1.20526 1.88412 1.51804 1.69090 1.19940 0.90876 0.91561 0.91299 0.89893 0.92217 0.90714 0.87066 0.92221 0.86800 0.89055 0.89948 0.87356 0.92791 0.90151 0.75257 0.75262 0.93674 0.93388 0.91291 0.91499 0.98951 0.98808 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 6.41 71.98 0.46 -0.73 16 2 C -0.13 -1.63 3.45 -9.97 -0.03 -1.66 16 3 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 4 C 0.07 0.96 3.86 31.16 0.12 1.08 16 5 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 6 C -0.15 -1.45 8.45 71.98 0.61 -0.84 16 7 O -0.38 -6.38 11.35 -148.98 -1.69 -8.07 16 8 C 0.04 0.55 6.96 72.22 0.50 1.05 16 9 C 0.08 0.97 1.27 -10.09 -0.01 0.95 16 10 C -0.15 -1.16 5.51 31.66 0.17 -0.99 16 11 C -0.14 -1.13 6.43 32.14 0.21 -0.92 16 12 C 0.07 0.87 3.49 31.29 0.11 0.98 16 13 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 14 C 0.14 2.64 5.39 86.38 0.47 3.11 16 15 N -0.73 -15.84 5.52 -478.53 -2.64 -18.48 16 16 C 0.70 21.79 8.57 179.06 1.53 23.33 16 17 O -0.64 -26.19 16.34 -3.99 -0.07 -26.25 16 18 N -0.73 -21.45 5.56 -478.55 -2.66 -24.11 16 19 C 0.15 5.54 5.67 86.38 0.49 6.03 16 20 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 21 C 0.02 1.19 4.97 29.85 0.15 1.34 16 22 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 23 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 24 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 25 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 26 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 27 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 O -0.37 -5.93 10.35 -148.98 -1.54 -7.48 16 31 H 0.07 0.53 6.11 -2.39 -0.01 0.51 16 32 H 0.07 0.52 6.35 -2.38 -0.02 0.50 16 33 H 0.07 0.50 7.22 -2.39 -0.02 0.48 16 34 H 0.08 0.63 7.81 -2.39 -0.02 0.61 16 35 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.07 0.66 6.52 -2.39 -0.02 0.64 16 37 H 0.11 1.11 7.42 -2.39 -0.02 1.09 16 38 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.11 0.71 4.48 -2.39 -0.01 0.70 16 40 H 0.09 0.52 7.45 -2.39 -0.02 0.50 16 41 H 0.08 0.72 7.29 -2.39 -0.02 0.71 16 42 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.41 6.79 8.49 -92.70 -0.79 6.00 16 46 H 0.41 9.20 8.49 -92.70 -0.79 8.42 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 51 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 52 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 53 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -75.63 411.07 -1.32 -76.95 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.66 Total: 19.56 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.63 Total: -1.07 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -5.02 Total: -99.84 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -3.30 Total: -41.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.63 -1.32 -76.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124124.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.466 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds