Wall clock time and date at job start Wed Apr 1 2020 00:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 110.32380 * 2 1 4 4 O 1.44527 * 110.36042 * 237.77196 * 2 1 3 5 5 C 1.44694 * 105.46076 * 201.24737 * 4 2 1 6 6 C 1.53389 * 104.56469 * 39.46592 * 5 4 2 7 7 C 1.53366 * 111.21506 * 97.25289 * 6 5 4 8 8 C 1.54749 * 103.72655 * 144.23828 * 7 6 5 9 9 C 1.54552 * 104.05582 * 0.79729 * 8 7 6 10 10 H 1.09007 * 110.32807 * 95.40445 * 9 8 7 11 11 C 1.53008 * 110.33503 * 217.52018 * 9 8 7 12 12 N 1.46495 * 109.47333 * 185.00105 * 11 9 8 13 13 C 1.34772 * 120.00012 * 180.02562 * 12 11 9 14 14 O 1.21589 * 120.00066 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00482 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00224 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47066 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46897 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00461 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00370 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00430 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99780 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47086 * 89.99628 * 23 21 19 25 25 H 1.48497 * 109.47230 * 209.99936 * 23 21 19 26 26 H 1.48503 * 109.46966 * 329.99867 * 23 21 19 27 27 O 1.43119 * 111.52832 * 215.76709 * 6 5 4 28 28 C 1.53419 * 105.17490 * 336.77759 * 6 5 4 29 29 H 1.09006 * 110.58302 * 118.24643 * 28 6 5 30 30 C 1.53000 * 110.59204 * 241.15521 * 28 6 5 31 31 H 1.09008 * 109.47046 * 180.77416 * 1 2 3 32 32 H 1.08996 * 109.47078 * 300.77011 * 1 2 3 33 33 H 1.08998 * 109.47211 * 60.77609 * 1 2 3 34 34 H 1.08997 * 110.41515 * 280.69516 * 5 4 2 35 35 H 1.08997 * 110.51911 * 158.28557 * 5 4 2 36 36 H 1.09000 * 110.57314 * 25.67484 * 7 6 5 37 37 H 1.08996 * 110.57556 * 262.79776 * 7 6 5 38 38 H 1.08999 * 110.51040 * 242.15716 * 8 7 6 39 39 H 1.08996 * 110.63170 * 119.50545 * 8 7 6 40 40 H 1.09006 * 109.46328 * 65.00036 * 11 9 8 41 41 H 1.09000 * 109.46701 * 305.01013 * 11 9 8 42 42 H 0.97002 * 119.99965 * 0.02562 * 12 11 9 43 43 H 0.97001 * 119.99510 * 359.97438 * 15 13 12 44 44 H 1.08996 * 109.47360 * 60.00137 * 16 15 13 45 45 H 1.08993 * 109.47314 * 299.99663 * 16 15 13 46 46 H 1.08996 * 109.46639 * 59.99996 * 17 16 15 47 47 H 1.08993 * 109.46990 * 300.00162 * 17 16 15 48 48 H 1.08993 * 109.47485 * 300.00027 * 18 17 16 49 49 H 1.08996 * 109.47258 * 60.00543 * 18 17 16 50 50 H 0.97003 * 119.99977 * 179.97438 * 22 21 19 51 51 H 1.09005 * 109.46724 * 50.02417 * 30 28 6 52 52 H 1.08994 * 109.47431 * 170.03008 * 30 28 6 53 53 H 1.09002 * 109.46673 * 290.03416 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 8 2.0328 -0.7226 -1.1462 5 6 3.3856 -1.1018 -0.8001 6 6 3.3083 -1.4989 0.6795 7 6 3.1773 -3.0185 0.8402 8 6 3.9956 -3.3245 2.1175 9 6 4.5023 -1.9394 2.5795 10 1 3.8330 -1.5232 3.3326 11 6 5.9231 -2.0516 3.1363 12 7 6.3395 -0.7554 3.6770 13 6 7.5634 -0.6149 4.2234 14 8 8.3222 -1.5640 4.2672 15 7 7.9464 0.5775 4.7214 16 6 9.2771 0.7302 5.3148 17 6 9.4574 2.1705 5.7989 18 6 10.8468 2.3298 6.4192 19 6 11.0241 3.7482 6.8965 20 1 10.2255 4.4643 6.7705 21 6 12.2059 4.1319 7.4942 22 7 12.3608 5.3698 7.9103 23 14 13.5876 2.8936 7.7117 24 1 14.4705 2.9225 6.5180 25 1 14.3775 3.2405 8.9203 26 1 13.0129 1.5334 7.8695 27 8 4.4929 -1.1199 1.3876 28 6 2.0709 -0.7746 1.2256 29 1 1.3323 -1.4930 1.5814 30 6 2.4636 0.1935 2.3433 31 1 -0.3633 -1.0277 0.0139 32 1 -0.3633 0.5257 0.8830 33 1 -0.3633 0.5017 -0.8968 34 1 4.0627 -0.2580 -0.9324 35 1 3.7116 -1.9483 -1.4043 36 1 3.6043 -3.5329 -0.0207 37 1 2.1335 -3.3006 0.9773 38 1 4.8347 -3.9803 1.8855 39 1 3.3612 -3.7735 2.8817 40 1 6.6037 -2.3480 2.3381 41 1 5.9447 -2.7999 3.9286 42 1 5.7343 0.0019 3.6418 43 1 7.3412 1.3347 4.6862 44 1 10.0367 0.5007 4.5676 45 1 9.3792 0.0476 6.1584 46 1 8.6977 2.4004 6.5460 47 1 9.3553 2.8528 4.9551 48 1 10.9484 1.6475 7.2631 49 1 11.6067 2.0998 5.6724 50 1 13.1921 5.6395 8.3311 51 1 3.2901 0.8200 2.0076 52 1 1.6101 0.8226 2.5957 53 1 2.7708 -0.3724 3.2228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124126.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:35 Heat of formation + Delta-G solvation = -158.825642 kcal Electronic energy + Delta-G solvation = -30032.071858 eV Core-core repulsion = 25902.222403 eV Total energy + Delta-G solvation = -4129.849455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.09061 -40.97073 -39.14991 -37.12102 -35.79768 -35.13143 -34.24313 -33.38033 -33.21428 -32.14948 -30.33815 -29.03480 -27.68635 -25.48664 -24.78103 -23.92367 -22.74267 -22.25364 -21.96383 -21.55974 -21.07727 -19.29845 -18.88248 -17.90701 -17.42835 -17.21662 -17.05217 -16.76545 -16.37322 -16.30722 -15.75182 -15.66424 -15.27872 -15.20388 -15.11696 -14.78559 -14.65427 -14.32218 -14.05724 -13.77936 -13.65356 -13.48597 -13.33799 -12.99642 -12.96390 -12.72480 -12.68691 -12.65027 -12.57660 -12.42899 -12.11104 -11.92635 -11.85607 -11.77430 -11.59431 -11.58456 -11.44315 -11.32885 -11.27314 -10.79580 -10.75425 -10.46643 -10.39231 -9.76156 -8.28665 -6.32384 1.37732 1.39120 1.51188 1.70450 2.14976 2.37125 2.57469 2.88549 3.07076 3.30384 3.41333 3.46591 3.56246 3.70259 3.96744 4.00323 4.08046 4.11618 4.22603 4.24258 4.30927 4.33641 4.41276 4.51381 4.52618 4.58427 4.63265 4.64414 4.68378 4.78683 4.89587 4.91654 4.92209 4.93335 4.94521 5.04084 5.05205 5.08490 5.12757 5.13948 5.30207 5.40201 5.42154 5.46733 5.53932 5.57470 5.65933 5.66968 5.99064 6.00250 6.28331 6.75473 7.09085 7.32353 7.57365 8.87613 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.001742 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.343918 B =16068.270016 C =16914.599614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.065 0.935 4 O -0.386 6.386 5 C 0.055 3.945 6 C 0.071 3.929 7 C -0.134 4.134 8 C -0.144 4.144 9 C 0.062 3.938 10 H 0.101 0.899 11 C 0.146 3.854 12 N -0.730 5.730 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.733 5.733 16 C 0.147 3.853 17 C -0.099 4.099 18 C -0.013 4.013 19 C -0.530 4.530 20 H 0.038 0.962 21 C 0.004 3.996 22 N -0.950 5.950 23 Si 0.947 3.053 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.247 1.247 27 O -0.360 6.360 28 C -0.131 4.131 29 H 0.102 0.898 30 C -0.143 4.143 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.410 0.590 43 H 0.410 0.590 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.022 0.978 49 H 0.019 0.981 50 H 0.266 0.734 51 H 0.054 0.946 52 H 0.067 0.933 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.005 -18.826 -16.312 38.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 H 0.083 0.917 4 O -0.306 6.306 5 C -0.022 4.022 6 C 0.030 3.970 7 C -0.171 4.171 8 C -0.182 4.182 9 C 0.005 3.995 10 H 0.118 0.882 11 C 0.022 3.978 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.522 6.522 15 N -0.388 5.388 16 C 0.022 3.978 17 C -0.137 4.137 18 C -0.051 4.051 19 C -0.568 4.568 20 H 0.056 0.944 21 C -0.193 4.193 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.171 1.171 27 O -0.279 6.279 28 C -0.150 4.150 29 H 0.120 0.880 30 C -0.200 4.200 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.246 0.754 43 H 0.246 0.754 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.086 0.914 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.164 -19.459 -16.458 37.983 hybrid contribution 0.566 0.805 0.325 1.037 sum -27.597 -18.654 -16.133 37.012 Atomic orbital electron populations 1.21816 0.91819 1.03258 1.03187 1.23279 0.96339 0.95214 0.84189 0.91658 1.89198 1.27533 1.74789 1.39032 1.23263 0.84627 1.01029 0.93251 1.22902 0.86138 0.95297 0.92624 1.22881 1.02231 0.93258 0.98755 1.22970 1.00933 0.96105 0.98183 1.23572 0.95307 0.91887 0.88717 0.88178 1.21328 0.94141 0.84551 0.97803 1.44880 1.14911 1.14658 1.64168 1.16133 0.82460 0.83199 0.78426 1.90885 1.54972 1.40701 1.65594 1.45046 1.18355 1.11254 1.64192 1.21137 0.82668 0.97104 0.96873 1.21470 0.98157 0.93778 1.00284 1.19467 0.94601 0.94928 0.96064 1.21464 1.00753 0.96239 1.38352 0.94392 1.25986 1.01457 0.97089 0.94754 1.70057 1.27453 1.19220 1.42336 0.85700 0.78856 0.80368 0.78005 1.19337 1.20991 1.17088 1.89031 1.42235 1.61625 1.35055 1.22947 0.96892 0.98747 0.96368 0.87958 1.21826 1.01841 0.98957 0.97344 0.91526 0.89504 0.92160 0.92178 0.87327 0.89952 0.88724 0.90043 0.88040 0.92601 0.89984 0.75354 0.75369 0.92878 0.92602 0.91613 0.91833 0.95978 0.96250 0.92531 0.92651 0.91376 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.53 71.98 0.69 -0.56 16 2 C 0.07 0.81 3.50 31.19 0.11 0.92 16 3 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 4 O -0.39 -6.36 11.35 -148.98 -1.69 -8.05 16 5 C 0.06 0.78 7.00 72.11 0.50 1.29 16 6 C 0.07 0.82 1.09 -10.40 -0.01 0.81 16 7 C -0.13 -1.11 6.21 31.31 0.19 -0.92 16 8 C -0.14 -1.14 6.65 31.72 0.21 -0.93 16 9 C 0.06 0.70 2.78 31.12 0.09 0.78 16 10 H 0.10 0.85 5.35 -2.38 -0.01 0.83 16 11 C 0.15 2.50 5.27 86.38 0.46 2.96 16 12 N -0.73 -14.39 5.56 -478.53 -2.66 -17.05 16 13 C 0.70 20.06 8.57 179.06 1.53 21.59 16 14 O -0.64 -24.19 16.34 -4.00 -0.07 -24.26 16 15 N -0.73 -19.58 5.56 -478.55 -2.66 -22.24 16 16 C 0.15 4.79 5.67 86.38 0.49 5.28 16 17 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 18 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 19 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 20 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 21 C 0.00 0.23 5.47 84.66 0.46 0.69 16 22 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 23 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 27 O -0.36 -5.30 9.45 -148.98 -1.41 -6.70 16 28 C -0.13 -1.25 2.80 -10.06 -0.03 -1.28 16 29 H 0.10 0.74 7.05 -2.38 -0.02 0.72 16 30 C -0.14 -1.27 8.06 71.98 0.58 -0.69 16 31 H 0.07 0.54 8.13 -2.38 -0.02 0.52 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 35 H 0.11 1.28 7.45 -2.39 -0.02 1.26 16 36 H 0.08 0.68 7.48 -2.39 -0.02 0.66 16 37 H 0.09 0.57 7.39 -2.39 -0.02 0.55 16 38 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.41 5.95 8.49 -92.71 -0.79 5.16 16 43 H 0.41 8.45 8.49 -92.71 -0.79 7.66 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 49 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 50 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.05 0.66 7.56 -2.38 -0.02 0.64 16 52 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.07 0.52 5.40 -2.39 -0.01 0.50 16 Total: -1.00 -75.23 411.14 -1.22 -76.45 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.72 Total: 18.47 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.80 Total: -3.93 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.02 Total: -98.51 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -3.16 Total: -39.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -75.23 -1.22 -76.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124126.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.374 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds