Wall clock time and date at job start Wed Apr 1 2020 00:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.32572 * 2 1 4 4 O 1.44493 * 110.36705 * 237.65027 * 2 1 3 5 5 C 1.44606 * 105.41010 * 201.15859 * 4 2 1 6 6 C 1.53706 * 104.64729 * 39.76151 * 5 4 2 7 7 C 1.53627 * 110.48839 * 95.56842 * 6 5 4 8 8 C 1.55746 * 102.01153 * 143.16968 * 7 6 5 9 9 C 1.55016 * 100.91667 * 326.51929 * 8 7 6 10 10 H 1.09002 * 110.30379 * 277.02577 * 9 8 7 11 11 C 1.53002 * 110.30579 * 154.97132 * 9 8 7 12 12 N 1.46495 * 109.47254 * 181.37671 * 11 9 8 13 13 C 1.34772 * 120.00186 * 179.97438 * 12 11 9 14 14 O 1.21591 * 120.00034 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00612 * 179.97438 * 13 12 11 16 16 C 1.46494 * 120.00524 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47336 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47399 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47188 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00035 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 119.99812 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47446 * 89.99938 * 23 21 19 25 25 H 1.48501 * 109.47315 * 209.99685 * 23 21 19 26 26 H 1.48504 * 109.47527 * 329.99707 * 23 21 19 27 27 O 1.42365 * 111.29773 * 216.19434 * 6 5 4 28 28 C 1.53748 * 104.83771 * 336.57037 * 6 5 4 29 29 H 1.08999 * 110.55987 * 118.35628 * 28 6 5 30 30 C 1.52997 * 110.56315 * 241.19764 * 28 6 5 31 31 H 1.09002 * 109.46677 * 297.76000 * 1 2 3 32 32 H 1.08996 * 109.47176 * 57.75402 * 1 2 3 33 33 H 1.08990 * 109.47375 * 177.76121 * 1 2 3 34 34 H 1.09002 * 110.40503 * 280.97129 * 5 4 2 35 35 H 1.09001 * 110.40409 * 158.55327 * 5 4 2 36 36 H 1.08997 * 110.92641 * 261.34094 * 7 6 5 37 37 H 1.08998 * 110.93037 * 24.99950 * 7 6 5 38 38 H 1.08998 * 111.20850 * 208.59793 * 8 7 6 39 39 H 1.09004 * 111.11585 * 84.40071 * 8 7 6 40 40 H 1.09003 * 109.46753 * 301.37676 * 11 9 8 41 41 H 1.09000 * 109.47075 * 61.37006 * 11 9 8 42 42 H 0.97000 * 120.00224 * 359.97438 * 12 11 9 43 43 H 0.97005 * 119.99311 * 0.02562 * 15 13 12 44 44 H 1.08992 * 109.47203 * 300.00153 * 16 15 13 45 45 H 1.09002 * 109.46895 * 60.00491 * 16 15 13 46 46 H 1.09002 * 109.47304 * 300.00297 * 17 16 15 47 47 H 1.08999 * 109.46854 * 60.00055 * 17 16 15 48 48 H 1.09002 * 109.46908 * 300.00261 * 18 17 16 49 49 H 1.08999 * 109.47300 * 60.00049 * 18 17 16 50 50 H 0.96998 * 119.99993 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.47041 * 60.00427 * 30 28 6 52 52 H 1.09004 * 109.47397 * 179.97438 * 30 28 6 53 53 H 1.09003 * 109.47783 * 300.00215 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7248 -1.1444 5 6 3.3854 -1.1006 -0.7972 6 6 3.3092 -1.5019 0.6846 7 6 3.1413 -3.0228 0.8218 8 6 3.9987 -3.3309 2.0850 9 6 5.1250 -2.2757 1.9398 10 1 5.8985 -2.6388 1.2631 11 6 5.7276 -1.9507 3.3081 12 7 6.7662 -0.9291 3.1540 13 6 7.4387 -0.4836 4.2337 14 8 7.1837 -0.9299 5.3356 15 7 8.3945 0.4560 4.0920 16 6 9.1251 0.9406 5.2656 17 6 10.1458 1.9945 4.8317 18 6 10.9093 2.5002 6.0574 19 6 11.9142 3.5386 5.6300 20 1 12.0002 3.8104 4.5884 21 6 12.7241 4.1418 6.5689 22 7 13.6014 5.0477 6.1959 23 14 12.5759 3.6712 8.3705 24 1 13.4961 2.5433 8.6649 25 1 12.9348 4.8367 9.2178 26 1 11.1791 3.2592 8.6614 27 8 4.4843 -1.1117 1.3872 28 6 2.0683 -0.7735 1.2264 29 1 1.3283 -1.4905 1.5818 30 6 2.4593 0.1957 2.3438 31 1 -0.3633 0.4787 0.9094 32 1 -0.3633 0.5483 -0.8691 33 1 -0.3633 -1.0268 -0.0401 34 1 4.0602 -0.2545 -0.9274 35 1 3.7126 -1.9454 -1.4033 36 1 2.0965 -3.2858 0.9871 37 1 3.5375 -3.5387 -0.0527 38 1 4.4020 -4.3429 2.0506 39 1 3.4251 -3.1697 2.9978 40 1 4.9461 -1.5774 3.9699 41 1 6.1656 -2.8526 3.7357 42 1 6.9699 -0.5732 2.2749 43 1 8.5982 0.8118 3.2128 44 1 8.4238 1.3831 5.9729 45 1 9.6432 0.1075 5.7406 46 1 10.8472 1.5515 4.1245 47 1 9.6281 2.8276 4.3564 48 1 10.2082 2.9430 6.7649 49 1 11.4270 1.6668 6.5323 50 1 14.1708 5.4722 6.8565 51 1 3.1610 0.9339 1.9555 52 1 1.5679 0.7020 2.7141 53 1 2.9277 -0.3578 3.1577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124127.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:39 Heat of formation + Delta-G solvation = -163.781059 kcal Electronic energy + Delta-G solvation = -30027.148238 eV Core-core repulsion = 25897.083900 eV Total energy + Delta-G solvation = -4130.064338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.93060 -40.95800 -39.17652 -37.11459 -35.77850 -35.12974 -34.33368 -33.37524 -33.20440 -32.17738 -30.14881 -28.95408 -27.66706 -25.46514 -24.79302 -23.94973 -22.63438 -22.23570 -22.06263 -21.64400 -20.96361 -19.30777 -18.88605 -17.79833 -17.38897 -17.32369 -16.95340 -16.77458 -16.49425 -16.32832 -15.74550 -15.71271 -15.26708 -15.07911 -14.88531 -14.75006 -14.56174 -14.25716 -14.02249 -13.79893 -13.68102 -13.49948 -13.42084 -13.08776 -12.94554 -12.75010 -12.70965 -12.67183 -12.66260 -12.46366 -12.13260 -11.92772 -11.82242 -11.77701 -11.68281 -11.58606 -11.33421 -11.31904 -11.26002 -10.82229 -10.75577 -10.39650 -10.37781 -9.74471 -8.28857 -6.32630 1.37406 1.39071 1.51136 1.71621 2.16022 2.37010 2.52373 2.94054 3.06828 3.33446 3.36854 3.47924 3.59323 3.73695 3.84714 4.04757 4.10933 4.12798 4.22839 4.26108 4.31580 4.36400 4.43435 4.52228 4.52388 4.57244 4.62741 4.65511 4.69820 4.83904 4.86236 4.89549 4.91381 4.92514 5.00146 5.04059 5.04812 5.06462 5.09474 5.18373 5.29173 5.37523 5.42120 5.47874 5.54185 5.57105 5.65818 5.75160 6.01193 6.11322 6.28166 6.75224 7.10340 7.32071 7.58584 8.87490 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.001749 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.426755 B =16004.784614 C =16576.166950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.063 0.937 4 O -0.386 6.386 5 C 0.041 3.959 6 C 0.076 3.924 7 C -0.132 4.132 8 C -0.141 4.141 9 C 0.070 3.930 10 H 0.096 0.904 11 C 0.144 3.856 12 N -0.729 5.729 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.734 5.734 16 C 0.147 3.853 17 C -0.099 4.099 18 C -0.012 4.012 19 C -0.530 4.530 20 H 0.037 0.963 21 C 0.004 3.996 22 N -0.950 5.950 23 Si 0.948 3.052 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.248 1.248 27 O -0.363 6.363 28 C -0.121 4.121 29 H 0.100 0.900 30 C -0.124 4.124 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.411 0.589 43 H 0.410 0.590 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.266 0.734 51 H 0.045 0.955 52 H 0.061 0.939 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.967 -20.113 -15.319 38.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.081 0.919 4 O -0.305 6.305 5 C -0.036 4.036 6 C 0.036 3.964 7 C -0.170 4.170 8 C -0.179 4.179 9 C 0.013 3.987 10 H 0.113 0.887 11 C 0.020 3.980 12 N -0.385 5.385 13 C 0.398 3.602 14 O -0.522 6.522 15 N -0.389 5.389 16 C 0.023 3.977 17 C -0.137 4.137 18 C -0.050 4.050 19 C -0.568 4.568 20 H 0.056 0.944 21 C -0.193 4.193 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.172 1.172 27 O -0.282 6.282 28 C -0.140 4.140 29 H 0.118 0.882 30 C -0.181 4.181 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.246 0.754 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.080 0.920 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.122 -20.239 -14.440 38.291 hybrid contribution 0.832 0.734 0.128 1.117 sum -28.290 -19.505 -14.312 37.224 Atomic orbital electron populations 1.21812 0.91896 1.03263 1.03134 1.23229 0.96304 0.95092 0.84269 0.91904 1.89167 1.27772 1.74656 1.38933 1.23716 0.84511 1.01092 0.94302 1.22861 0.86058 0.95866 0.91649 1.23184 1.02448 0.92351 0.99005 1.23328 0.95638 1.00059 0.98918 1.23387 0.96014 0.86098 0.93201 0.88670 1.21400 0.89082 0.90997 0.96565 1.44861 1.40107 1.44675 1.08839 1.16139 0.79692 0.79874 0.84524 1.90882 1.71385 1.63476 1.26481 1.45055 1.39217 1.42775 1.11876 1.21127 0.93212 0.96400 0.86993 1.21472 0.96463 0.96955 0.98822 1.19468 0.94888 0.95256 0.95420 1.21464 1.18876 1.21731 0.94772 0.94436 1.25992 0.94501 0.94597 1.04218 1.70057 1.24019 1.28798 1.36196 0.85692 0.80087 0.78048 0.79055 1.19192 1.21024 1.17156 1.88431 1.38232 1.30981 1.70591 1.22810 0.96607 0.98533 0.96002 0.88213 1.21464 1.00772 0.98481 0.97398 0.89838 0.91982 0.91420 0.92154 0.87104 0.88755 0.88805 0.87421 0.90026 0.92640 0.90291 0.75318 0.75412 0.92911 0.92589 0.91665 0.91865 0.96109 0.96095 0.92524 0.93546 0.92020 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.52 71.98 0.69 -0.76 16 2 C 0.07 0.92 3.50 31.16 0.11 1.03 16 3 H 0.06 0.95 7.83 -2.38 -0.02 0.93 16 4 O -0.39 -6.37 11.35 -148.98 -1.69 -8.06 16 5 C 0.04 0.53 6.96 72.22 0.50 1.03 16 6 C 0.08 0.88 1.24 -10.09 -0.01 0.87 16 7 C -0.13 -0.94 6.12 31.75 0.19 -0.75 16 8 C -0.14 -1.00 6.60 32.23 0.21 -0.78 16 9 C 0.07 0.76 3.50 31.28 0.11 0.87 16 10 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 11 C 0.14 2.41 5.40 86.38 0.47 2.88 16 12 N -0.73 -14.52 5.50 -478.54 -2.63 -17.15 16 13 C 0.70 20.15 8.57 179.06 1.53 21.68 16 14 O -0.64 -24.19 16.34 -4.00 -0.07 -24.25 16 15 N -0.73 -19.85 5.56 -478.56 -2.66 -22.51 16 16 C 0.15 4.84 5.67 86.38 0.49 5.33 16 17 C -0.10 -3.64 5.27 30.59 0.16 -3.48 16 18 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 19 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 21 C 0.00 0.22 5.47 84.66 0.46 0.68 16 22 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 23 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 27 O -0.36 -5.10 8.67 -148.98 -1.29 -6.39 16 28 C -0.12 -1.45 2.89 -9.98 -0.03 -1.48 16 29 H 0.10 0.98 6.98 -2.39 -0.02 0.96 16 30 C -0.12 -1.78 8.22 71.98 0.59 -1.19 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 35 H 0.11 1.05 7.43 -2.39 -0.02 1.03 16 36 H 0.09 0.57 7.32 -2.39 -0.02 0.55 16 37 H 0.09 0.47 7.45 -2.39 -0.02 0.45 16 38 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.65 8.05 -2.38 -0.02 0.63 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.41 6.25 8.46 -92.71 -0.78 5.47 16 43 H 0.41 8.67 8.49 -92.70 -0.79 7.88 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 49 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.05 0.81 7.91 -2.39 -0.02 0.79 16 52 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 53 H 0.05 0.86 7.90 -2.39 -0.02 0.84 16 Total: -1.00 -75.05 416.91 -1.04 -76.09 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.73 Total: 19.64 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.85 Total: -4.63 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -4.99 Total: -99.01 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -3.05 Total: -38.70 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -75.05 -1.04 -76.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124127.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.687 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds