Wall clock time and date at job start Tue Mar 31 2020 23:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.25390 * 2 1 4 4 C 1.55113 * 110.37394 * 237.89897 * 2 1 3 5 5 C 1.54567 * 100.91820 * 205.58134 * 4 2 1 6 6 C 1.53439 * 110.44511 * 274.28172 * 5 4 2 7 7 C 1.55533 * 101.91890 * 258.15560 * 6 5 4 8 8 C 1.55039 * 101.05445 * 326.67518 * 7 6 5 9 9 H 1.08998 * 110.30512 * 276.97776 * 8 7 6 10 10 C 1.53007 * 110.30068 * 154.92328 * 8 7 6 11 11 N 1.46505 * 109.46732 * 179.97438 * 10 8 7 12 12 C 1.34780 * 119.99827 * 180.02562 * 11 10 8 13 13 O 1.21591 * 119.99439 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99964 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99766 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46725 * 179.97438 * 15 14 12 17 17 C 1.52991 * 109.47332 * 299.99706 * 16 15 14 18 18 C 1.52994 * 109.46780 * 60.00373 * 16 15 14 19 19 C 1.50704 * 109.46835 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00011 * 0.02562 * 19 16 15 21 21 C 1.37877 * 120.00082 * 180.02562 * 19 16 15 22 22 N 1.31517 * 119.99751 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99877 * 180.02562 * 21 19 16 24 24 H 1.48492 * 109.47219 * 60.00634 * 23 21 19 25 25 H 1.48504 * 109.46798 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47334 * 299.99760 * 23 21 19 27 27 O 1.42139 * 111.44759 * 153.27700 * 5 4 2 28 28 C 1.53396 * 103.20738 * 33.00629 * 5 4 2 29 29 O 1.43493 * 107.45199 * 339.74796 * 28 5 4 30 30 H 1.09002 * 109.46905 * 299.41139 * 1 2 3 31 31 H 1.09001 * 109.46663 * 59.40958 * 1 2 3 32 32 H 1.08996 * 109.46757 * 179.41048 * 1 2 3 33 33 H 1.09006 * 111.14439 * 323.40043 * 4 2 1 34 34 H 1.09002 * 111.14665 * 87.56405 * 4 2 1 35 35 H 1.08994 * 110.94270 * 16.31534 * 6 5 4 36 36 H 1.09002 * 110.93958 * 140.00488 * 6 5 4 37 37 H 1.08998 * 111.10200 * 84.62621 * 7 6 5 38 38 H 1.09002 * 111.10769 * 208.72671 * 7 6 5 39 39 H 1.08988 * 109.47402 * 299.99981 * 10 8 7 40 40 H 1.09000 * 109.46944 * 60.00231 * 10 8 7 41 41 H 0.96994 * 120.00126 * 0.02562 * 11 10 8 42 42 H 0.97004 * 120.00114 * 359.97438 * 14 12 11 43 43 H 1.08991 * 109.46937 * 299.99681 * 15 14 12 44 44 H 1.09003 * 109.47288 * 60.00100 * 15 14 12 45 45 H 1.08997 * 109.46890 * 60.00421 * 17 16 15 46 46 H 1.09001 * 109.47014 * 179.97438 * 17 16 15 47 47 H 1.08994 * 109.47856 * 300.00206 * 17 16 15 48 48 H 1.09000 * 109.47612 * 59.99658 * 18 16 15 49 49 H 1.09000 * 109.46847 * 179.97438 * 18 16 15 50 50 H 1.08997 * 109.47208 * 299.99436 * 18 16 15 51 51 H 0.97000 * 119.99766 * 179.97438 * 22 21 19 52 52 H 1.09002 * 109.87218 * 220.23974 * 28 5 4 53 53 H 1.09002 * 109.87485 * 99.25309 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9074 1.0226 0.0000 4 6 2.0701 -0.7727 -1.2318 5 6 3.4553 -1.2204 -0.7123 6 6 4.4965 -0.1172 -0.9430 7 6 5.2490 -0.6433 -2.1984 8 6 5.1802 -2.1746 -1.9663 9 1 5.9778 -2.4915 -1.2942 10 6 5.2833 -2.9188 -3.2992 11 7 5.2171 -4.3624 -3.0588 12 6 5.2892 -5.2220 -4.0944 13 8 5.4097 -4.7992 -5.2281 14 7 5.2277 -6.5501 -3.8734 15 6 5.3066 -7.4844 -4.9990 16 6 5.2139 -8.9199 -4.4777 17 6 6.3694 -9.1871 -3.5112 18 6 3.8833 -9.1122 -3.7476 19 6 5.2945 -9.8810 -5.6357 20 1 5.4016 -9.5055 -6.6426 21 6 5.2315 -11.2397 -5.4096 22 7 5.1006 -11.6968 -4.1834 23 14 5.3321 -12.4309 -6.8449 24 1 6.6239 -12.2447 -7.5531 25 1 5.2408 -13.8242 -6.3391 26 1 4.2110 -12.1711 -7.7834 27 8 3.8949 -2.4066 -1.3605 28 6 3.2125 -1.4431 0.7859 29 8 2.0285 -0.7153 1.1428 30 1 -0.3633 0.5047 0.8952 31 1 -0.3633 0.5230 -0.8847 32 1 -0.3633 -1.0276 -0.0106 33 1 1.4418 -1.6331 -1.4626 34 1 2.1665 -0.1162 -2.0965 35 1 4.0131 0.8375 -1.1502 36 1 5.1711 -0.0339 -0.0909 37 1 4.7295 -0.3613 -3.1142 38 1 6.2816 -0.2943 -2.2120 39 1 4.4594 -2.6197 -3.9469 40 1 6.2305 -2.6739 -3.7797 41 1 5.1213 -4.6996 -2.1544 42 1 5.1320 -6.8873 -2.9689 43 1 4.4837 -7.2937 -5.6878 44 1 6.2548 -7.3476 -5.5190 45 1 6.3106 -8.4920 -2.6737 46 1 6.3030 -10.2096 -3.1395 47 1 7.3174 -9.0500 -4.0313 48 1 3.0601 -8.9219 -4.4362 49 1 3.8170 -10.1350 -3.3766 50 1 3.8245 -8.4171 -2.9101 51 1 5.0559 -12.6526 -4.0244 52 1 4.0625 -1.0715 1.3582 53 1 3.0684 -2.5052 0.9841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408974.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:12 Heat of formation + Delta-G solvation = -151.730224 kcal Electronic energy + Delta-G solvation = -30465.728126 eV Core-core repulsion = 26336.186351 eV Total energy + Delta-G solvation = -4129.541775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.79741 -40.96433 -39.20351 -38.20926 -35.76672 -34.97122 -33.47578 -33.08646 -32.79297 -31.99951 -28.78156 -27.55655 -27.39987 -27.14706 -26.41373 -24.29496 -22.89773 -22.06392 -21.80347 -21.32721 -20.57453 -19.50403 -18.08526 -17.76058 -17.49377 -17.26840 -16.90955 -16.59635 -16.38033 -16.16417 -15.81301 -15.38973 -15.19310 -14.87589 -14.77927 -14.63818 -14.16750 -14.14277 -13.99685 -13.76285 -13.49209 -13.29983 -13.14800 -13.11061 -13.08123 -12.77341 -12.65622 -12.61727 -12.48403 -12.32658 -12.23860 -12.12671 -12.06079 -11.71762 -11.59331 -11.47439 -11.37406 -11.12416 -10.70186 -10.64196 -10.41660 -10.40060 -10.29288 -9.64492 -8.00991 -6.16668 1.45215 1.45867 1.52675 1.80783 2.21519 2.46499 2.50392 2.83829 3.22400 3.35023 3.41987 3.45380 3.63361 3.80335 3.85773 4.08080 4.10446 4.24873 4.29380 4.38356 4.43457 4.51367 4.54694 4.60303 4.66571 4.70935 4.72327 4.75527 4.81723 4.84198 4.88897 4.98847 5.01513 5.02974 5.06941 5.11905 5.12114 5.20244 5.21085 5.27308 5.39283 5.50676 5.64153 5.67908 5.68187 5.99038 6.06054 6.07431 6.15672 6.22844 6.44669 6.87288 7.16264 7.50705 7.64410 8.97860 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.001971 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.472025 B =14205.595904 C =14821.221015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.091 0.909 4 C -0.155 4.155 5 C 0.072 3.928 6 C -0.134 4.134 7 C -0.141 4.141 8 C 0.069 3.931 9 H 0.096 0.904 10 C 0.143 3.857 11 N -0.732 5.732 12 C 0.696 3.304 13 O -0.643 6.643 14 N -0.727 5.727 15 C 0.168 3.832 16 C 0.051 3.949 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.528 4.528 20 H 0.045 0.955 21 C 0.027 3.973 22 N -0.900 5.900 23 Si 0.946 3.054 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.278 1.278 27 O -0.371 6.371 28 C 0.046 3.954 29 O -0.398 6.398 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.409 0.591 42 H 0.404 0.596 43 H 0.033 0.967 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.018 0.982 48 H 0.016 0.984 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.260 0.740 52 H 0.090 0.910 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 27.284 12.394 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.109 0.891 4 C -0.192 4.192 5 C 0.032 3.968 6 C -0.171 4.171 7 C -0.178 4.178 8 C 0.012 3.988 9 H 0.114 0.886 10 C 0.019 3.981 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.525 6.525 14 N -0.382 5.382 15 C 0.043 3.957 16 C 0.051 3.949 17 C -0.177 4.177 18 C -0.178 4.178 19 C -0.566 4.566 20 H 0.063 0.937 21 C -0.173 4.173 22 N -0.538 5.538 23 Si 0.773 3.227 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.203 1.203 27 O -0.291 6.291 28 C -0.031 4.031 29 O -0.318 6.318 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.245 0.755 42 H 0.241 0.759 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.035 0.965 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.070 0.930 52 H 0.108 0.892 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.523 27.291 11.662 29.786 hybrid contribution -0.014 -1.391 -0.376 1.441 sum -2.538 25.900 11.286 28.366 Atomic orbital electron populations 1.21921 0.93108 1.02534 1.03397 1.23126 0.95590 0.95837 0.83702 0.89144 1.23517 0.95559 1.00980 0.99169 1.22962 0.95682 0.86205 0.91965 1.23120 0.96757 0.98194 0.99046 1.23302 1.03674 0.91841 0.99026 1.23451 0.86256 0.96228 0.92849 0.88602 1.21410 1.02183 0.77974 0.96545 1.44893 1.79233 1.06118 1.08578 1.16196 0.77827 0.81683 0.84718 1.90848 1.60112 1.78408 1.23179 1.45208 1.77772 1.03746 1.11475 1.21119 0.98638 0.88807 0.87101 1.18362 0.93427 0.88860 0.94282 1.21647 0.96853 1.01801 0.97355 1.21663 0.96795 1.01713 0.97586 1.21235 1.50702 0.91658 0.93054 0.93669 1.25473 0.94733 0.99408 0.97691 1.69906 1.50225 1.13688 1.19998 0.85798 0.78453 0.78243 0.80197 1.20176 1.20829 1.20309 1.88415 1.35750 1.33799 1.71107 1.23340 0.88408 0.97096 0.94242 1.88495 1.43076 1.65344 1.34928 0.91583 0.89405 0.93107 0.91300 0.87919 0.87897 0.88531 0.89704 0.87083 0.92745 0.90058 0.75548 0.75919 0.94821 0.94504 0.94550 0.91907 0.96231 0.96459 0.91831 0.94674 0.93035 0.89215 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.62 71.98 0.69 -1.15 16 2 C 0.07 0.99 3.93 31.32 0.12 1.11 16 3 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.15 -2.16 5.66 31.85 0.18 -1.98 16 5 C 0.07 1.01 1.16 -9.98 -0.01 1.00 16 6 C -0.13 -1.07 5.95 31.61 0.19 -0.88 16 7 C -0.14 -1.23 6.58 32.16 0.21 -1.02 16 8 C 0.07 0.99 3.49 31.29 0.11 1.10 16 9 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 10 C 0.14 3.03 5.39 86.38 0.47 3.49 16 11 N -0.73 -18.98 5.52 -478.52 -2.64 -21.62 16 12 C 0.70 25.11 8.57 179.06 1.53 26.65 16 13 O -0.64 -28.61 16.34 -4.00 -0.07 -28.68 16 14 N -0.73 -26.43 4.96 -478.53 -2.37 -28.80 16 15 C 0.17 7.43 4.50 86.38 0.39 7.82 16 16 C 0.05 2.43 0.50 -52.93 -0.03 2.41 16 17 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 18 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 19 C -0.53 -28.35 8.01 25.60 0.21 -28.15 16 20 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 21 C 0.03 1.42 5.15 84.65 0.44 1.86 16 22 N -0.90 -48.50 9.35 21.45 0.20 -48.30 16 23 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 O -0.37 -6.85 10.45 -148.98 -1.56 -8.41 16 28 C 0.05 0.73 7.20 72.11 0.52 1.25 16 29 O -0.40 -7.43 11.06 -148.98 -1.65 -9.07 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.25 8.05 -2.38 -0.02 1.23 16 34 H 0.10 1.08 7.92 -2.39 -0.02 1.06 16 35 H 0.10 0.55 7.71 -2.39 -0.02 0.53 16 36 H 0.10 0.56 7.48 -2.39 -0.02 0.54 16 37 H 0.08 0.79 8.05 -2.39 -0.02 0.77 16 38 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.41 8.76 8.49 -92.71 -0.79 7.97 16 42 H 0.40 12.85 6.18 -92.71 -0.57 12.28 16 43 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 46 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 50 H 0.03 1.36 6.86 -2.39 -0.02 1.34 16 51 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 52 H 0.09 1.08 7.41 -2.39 -0.02 1.07 16 53 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 Total: -1.00 -67.66 409.38 -0.34 -67.99 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.46 Total: 27.96 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.18 Total: 3.83 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.81 Total: -98.72 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -3.27 Total: -46.16 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.66 -0.34 -67.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408974.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.738 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds