Wall clock time and date at job start Wed Apr 1 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.63903 * 2 1 4 4 C 1.54325 * 110.87691 * 236.75791 * 2 1 3 5 5 N 1.47023 * 107.26905 * 219.37236 * 4 2 1 6 6 C 1.34778 * 125.64849 * 178.97876 * 5 4 2 7 7 O 1.21507 * 120.00362 * 179.97438 * 6 5 4 8 8 O 1.34637 * 119.99726 * 359.97438 * 6 5 4 9 9 C 1.45197 * 116.99876 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47626 * 59.99609 * 9 8 6 11 11 C 1.53000 * 109.47070 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47096 * 299.99543 * 9 8 6 13 13 C 1.47427 * 108.70368 * 358.93967 * 5 4 2 14 14 C 1.54903 * 104.83301 * 24.12760 * 13 5 4 15 15 H 1.08999 * 111.03787 * 81.08272 * 14 13 5 16 16 C 1.53006 * 111.00296 * 204.92057 * 14 13 5 17 17 N 1.46500 * 109.46998 * 287.19453 * 16 14 13 18 18 C 1.34769 * 120.00237 * 180.02562 * 17 16 14 19 19 O 1.21282 * 119.99854 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00461 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47592 * 179.97438 * 20 18 17 22 22 C 1.50699 * 109.47235 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99962 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99790 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99622 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47485 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46928 * 119.99930 * 26 24 22 29 29 H 1.48505 * 109.46854 * 239.99748 * 26 24 22 30 30 H 1.08991 * 109.47231 * 296.85895 * 1 2 3 31 31 H 1.09006 * 109.46707 * 56.85860 * 1 2 3 32 32 H 1.09000 * 109.47026 * 176.85185 * 1 2 3 33 33 H 1.09005 * 109.87662 * 338.78790 * 4 2 1 34 34 H 1.08994 * 109.88786 * 99.95527 * 4 2 1 35 35 H 1.08995 * 109.46940 * 60.00149 * 10 9 8 36 36 H 1.08997 * 109.47350 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46658 * 299.99942 * 10 9 8 38 38 H 1.08999 * 109.47092 * 60.00110 * 11 9 8 39 39 H 1.09005 * 109.47102 * 179.97438 * 11 9 8 40 40 H 1.08995 * 109.47405 * 299.99795 * 11 9 8 41 41 H 1.09000 * 109.47480 * 59.99503 * 12 9 8 42 42 H 1.08994 * 109.47756 * 180.02562 * 12 9 8 43 43 H 1.09006 * 109.46609 * 300.00108 * 12 9 8 44 44 H 1.09000 * 110.36013 * 265.28565 * 13 5 4 45 45 H 1.08997 * 110.36806 * 142.96523 * 13 5 4 46 46 H 1.08993 * 109.46955 * 47.19678 * 16 14 13 47 47 H 1.09000 * 109.47050 * 167.19507 * 16 14 13 48 48 H 0.97010 * 119.99909 * 359.97438 * 17 16 14 49 49 H 1.08996 * 109.47077 * 300.00146 * 20 18 17 50 50 H 1.09004 * 109.46818 * 59.99313 * 20 18 17 51 51 H 1.09004 * 109.47108 * 300.00035 * 21 20 18 52 52 H 1.09000 * 109.46870 * 59.99930 * 21 20 18 53 53 H 0.97002 * 119.99804 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7904 -1.2060 5 7 3.2495 -1.5468 -0.7354 6 6 4.0007 -2.3782 -1.4844 7 8 4.9491 -2.9533 -0.9883 8 8 3.7001 -2.5714 -2.7825 9 6 4.5519 -3.4808 -3.5280 10 6 4.5043 -4.8678 -2.8841 11 6 4.0581 -3.5727 -4.9733 12 6 5.9906 -2.9603 -3.5123 13 6 3.4652 -1.2446 0.6914 14 6 2.0790 -0.7934 1.2151 15 1 1.4465 -1.6526 1.4387 16 6 2.2236 0.1112 2.4406 17 7 2.6287 -0.6932 3.5961 18 6 2.8175 -0.1049 4.7939 19 8 2.6524 1.0906 4.9150 20 6 3.2348 -0.9321 5.9824 21 6 3.3793 -0.0277 7.2079 22 6 3.7960 -0.8551 8.3965 23 1 3.9427 -1.9197 8.2887 24 6 3.9890 -0.2532 9.6219 25 7 3.8099 1.0431 9.7533 26 14 4.5062 -1.2787 11.0951 27 1 4.6402 -2.7000 10.6863 28 1 5.8096 -0.7857 11.6082 29 1 3.4794 -1.1656 12.1619 30 1 -0.3633 0.4643 0.9167 31 1 -0.3633 0.5619 -0.8606 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3191 -1.4772 -1.5771 34 1 2.3776 -0.1014 -1.9963 35 1 3.4794 -5.2386 -2.8954 36 1 5.1441 -5.5503 -3.4436 37 1 4.8559 -4.8026 -1.8544 38 1 4.0918 -2.5847 -5.4323 39 1 4.6979 -4.2550 -5.5331 40 1 3.0333 -3.9437 -4.9842 41 1 6.3422 -2.8950 -2.4827 42 1 6.6300 -3.6426 -4.0723 43 1 6.0244 -1.9721 -3.9712 44 1 4.1930 -0.4408 0.8030 45 1 3.7992 -2.1363 1.2218 46 1 2.9796 0.8713 2.2440 47 1 1.2691 0.5938 2.6506 48 1 2.7604 -1.6494 3.4993 49 1 2.4793 -1.6928 6.1788 50 1 4.1896 -1.4141 5.7723 51 1 4.1351 0.7328 7.0112 52 1 2.4247 0.4546 7.4181 53 1 3.9453 1.4665 10.6155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927128030.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:08 Heat of formation + Delta-G solvation = -162.123212 kcal Electronic energy + Delta-G solvation = -29934.960319 eV Core-core repulsion = 25804.967871 eV Total energy + Delta-G solvation = -4129.992449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.94785 -40.82821 -39.93208 -37.81791 -36.04035 -35.51806 -35.04327 -33.78276 -33.00484 -31.31718 -28.37080 -28.30177 -28.22140 -27.41412 -26.71999 -24.06829 -23.13362 -22.16907 -21.63514 -20.89343 -20.36242 -18.99404 -18.72145 -17.96119 -17.50382 -17.28598 -17.05722 -16.67896 -16.42016 -16.15589 -15.90905 -15.48745 -15.23071 -14.83027 -14.74230 -14.56219 -14.28208 -14.18732 -14.10801 -13.58203 -13.46885 -13.35821 -13.25233 -13.20726 -13.07633 -12.88955 -12.86670 -12.83269 -12.63965 -12.45101 -12.43210 -12.29487 -11.94976 -11.90466 -11.83142 -11.64863 -11.61903 -11.40209 -11.27220 -11.12277 -10.68529 -10.57092 -10.04186 -9.84073 -8.17568 -6.31175 1.01287 1.42382 1.43610 1.56944 1.69896 1.75241 2.25333 2.45190 2.84345 3.15476 3.35598 3.42887 3.67535 3.75168 3.79736 3.94617 4.06439 4.16892 4.20022 4.24672 4.43560 4.47634 4.54042 4.57131 4.61225 4.62004 4.64495 4.66850 4.74609 4.76176 4.77485 4.84343 4.86800 4.88211 5.01301 5.06069 5.08443 5.13162 5.16568 5.27584 5.30258 5.34644 5.43001 5.45110 5.48846 5.54686 5.65572 5.87051 6.19123 6.35992 6.62059 6.87744 7.21128 7.36969 7.39510 8.95204 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.001879 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.435544 B =14895.612226 C =16200.395106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.096 0.904 4 C 0.110 3.890 5 N -0.606 5.606 6 C 0.660 3.340 7 O -0.594 6.594 8 O -0.363 6.363 9 C 0.124 3.876 10 C -0.179 4.179 11 C -0.134 4.134 12 C -0.180 4.180 13 C 0.126 3.874 14 C -0.094 4.094 15 H 0.110 0.890 16 C 0.133 3.867 17 N -0.720 5.720 18 C 0.513 3.487 19 O -0.588 6.588 20 C -0.122 4.122 21 C 0.041 3.959 22 C -0.542 4.542 23 H 0.075 0.925 24 C -0.008 4.008 25 N -0.937 5.937 26 Si 0.973 3.027 27 H -0.254 1.254 28 H -0.281 1.281 29 H -0.280 1.280 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.415 0.585 49 H 0.105 0.895 50 H 0.101 0.899 51 H -0.018 1.018 52 H -0.016 1.016 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 -10.795 -34.624 36.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.346 5.346 6 C 0.416 3.584 7 O -0.485 6.485 8 O -0.278 6.278 9 C 0.088 3.912 10 C -0.236 4.236 11 C -0.191 4.191 12 C -0.237 4.237 13 C 0.005 3.995 14 C -0.113 4.113 15 H 0.128 0.872 16 C 0.009 3.991 17 N -0.374 5.374 18 C 0.301 3.699 19 O -0.468 6.468 20 C -0.162 4.162 21 C 0.003 3.997 22 C -0.580 4.580 23 H 0.093 0.907 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.797 3.203 27 H -0.177 1.177 28 H -0.207 1.207 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.252 0.748 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.000 1.000 52 H 0.002 0.998 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.594 -10.091 -34.444 36.185 hybrid contribution 0.605 -0.262 1.126 1.305 sum -3.989 -10.353 -33.318 35.116 Atomic orbital electron populations 1.21763 0.91940 1.02973 1.03079 1.22211 0.97693 0.99435 0.91375 0.88602 1.22290 0.86601 0.94908 0.97345 1.47206 1.31220 1.45104 1.11116 1.17715 0.80903 0.78887 0.80940 1.90914 1.31121 1.52691 1.73800 1.86314 1.57229 1.63688 1.20520 1.22431 0.89391 0.87588 0.91809 1.22467 1.03089 0.95554 1.02534 1.21871 1.02971 1.03936 0.90313 1.22473 0.95490 1.02197 1.03569 1.22346 0.97758 1.01186 0.78205 1.22600 0.95647 0.99424 0.93620 0.87226 1.21264 1.00715 0.93519 0.83586 1.45925 1.70503 1.12644 1.08305 1.21234 0.75464 0.88038 0.85145 1.90659 1.52703 1.17884 1.85541 1.21643 1.03566 0.98995 0.91946 1.18696 0.94778 0.94049 0.92136 1.21764 1.46143 0.95384 0.94745 0.90695 1.26131 0.95456 0.96134 1.02770 1.70183 1.50541 1.11589 1.25394 0.85279 0.77609 0.79227 0.78155 1.17726 1.20701 1.20558 0.91991 0.90777 0.91660 0.89855 0.90317 0.91818 0.89153 0.92232 0.91180 0.88037 0.91034 0.92306 0.89100 0.92009 0.91310 0.90356 0.92211 0.91034 0.74841 0.87731 0.88036 0.99961 0.99767 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 71.98 0.66 -0.50 16 2 C -0.09 -0.93 3.01 -9.61 -0.03 -0.96 16 3 H 0.10 1.02 8.04 -2.38 -0.02 1.00 16 4 C 0.11 1.34 6.49 86.73 0.56 1.90 16 5 N -0.61 -11.13 3.33 -942.11 -3.13 -14.26 16 6 C 0.66 15.09 7.93 129.79 1.03 16.11 16 7 O -0.59 -16.83 12.14 19.82 0.24 -16.59 16 8 O -0.36 -7.02 9.49 -55.46 -0.53 -7.55 16 9 C 0.12 1.89 1.13 -10.79 -0.01 1.88 16 10 C -0.18 -2.76 8.37 71.98 0.60 -2.16 16 11 C -0.13 -1.15 8.85 71.98 0.64 -0.51 16 12 C -0.18 -2.86 8.37 71.98 0.60 -2.26 16 13 C 0.13 2.23 6.32 86.85 0.55 2.78 16 14 C -0.09 -1.29 2.49 -9.40 -0.02 -1.31 16 15 H 0.11 1.30 8.05 -2.39 -0.02 1.28 16 16 C 0.13 2.73 5.13 86.38 0.44 3.17 16 17 N -0.72 -17.89 5.50 -463.06 -2.55 -20.44 16 18 C 0.51 19.26 7.83 87.66 0.69 19.95 16 19 O -0.59 -28.27 15.98 -3.04 -0.05 -28.32 16 20 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 21 C 0.04 2.30 4.26 29.85 0.13 2.42 16 22 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 23 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 24 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 25 N -0.94 -59.79 13.29 21.45 0.28 -59.50 16 26 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 27 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.06 0.49 8.07 -2.39 -0.02 0.47 16 33 H 0.08 0.87 7.78 -2.38 -0.02 0.85 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.30 5.88 -2.38 -0.01 1.28 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.07 1.33 7.91 -2.39 -0.02 1.31 16 45 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 46 H 0.06 1.39 7.96 -2.39 -0.02 1.37 16 47 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 48 H 0.41 7.63 8.47 -92.70 -0.79 6.84 16 49 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 50 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 51 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16 52 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 53 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -82.27 424.21 3.09 -79.18 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.09 Total: 15.76 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.70 Total: 4.94 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -5.40 Total: -94.20 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.33 Total: -52.45 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -82.27 3.09 -79.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927128030.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.940 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds