Wall clock time and date at job start Wed Apr 1 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46817 * 2 1 4 4 C 1.50703 * 109.47158 * 119.99287 * 2 1 3 5 5 H 1.08002 * 119.99638 * 29.18569 * 4 2 1 6 6 C 1.37875 * 120.00465 * 209.18172 * 4 2 1 7 7 N 1.31513 * 119.99811 * 353.27650 * 6 4 2 8 8 Si 1.86800 * 120.00120 * 173.27850 * 6 4 2 9 9 H 1.48491 * 109.47277 * 59.99977 * 8 6 4 10 10 H 1.48501 * 109.46927 * 299.99714 * 8 6 4 11 11 H 1.48499 * 109.47049 * 180.02562 * 8 6 4 12 12 C 1.50700 * 109.47680 * 240.00069 * 2 1 3 13 13 O 1.21286 * 119.99841 * 240.00014 * 12 2 1 14 14 N 1.34776 * 119.99767 * 59.99708 * 12 2 1 15 15 C 1.46499 * 119.99712 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47331 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.63741 * 54.29506 * 16 15 14 18 18 C 1.54325 * 110.72052 * 291.15805 * 16 15 14 19 19 N 1.47022 * 107.27013 * 219.44207 * 18 16 15 20 20 C 1.34775 * 125.64754 * 178.97101 * 19 18 16 21 21 O 1.21514 * 120.00165 * 0.02562 * 20 19 18 22 22 O 1.34639 * 120.00161 * 179.97438 * 20 19 18 23 23 C 1.45200 * 117.00293 * 180.02562 * 22 20 19 24 24 C 1.53004 * 109.46903 * 60.00223 * 23 22 20 25 25 C 1.53000 * 109.47232 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.47028 * 300.00504 * 23 22 20 27 27 C 1.47422 * 108.70461 * 358.94077 * 19 18 16 28 28 C 1.55119 * 104.94395 * 24.00067 * 27 19 18 29 29 H 1.08996 * 110.93888 * 81.21635 * 28 27 19 30 30 C 1.53003 * 111.16599 * 205.13663 * 28 27 19 31 31 H 1.09004 * 109.46903 * 54.92297 * 1 2 3 32 32 H 1.08996 * 109.46577 * 174.91616 * 1 2 3 33 33 H 1.08996 * 109.47358 * 294.91591 * 1 2 3 34 34 H 0.97006 * 120.00361 * 354.49908 * 7 6 4 35 35 H 0.96996 * 120.00573 * 0.02562 * 14 12 2 36 36 H 1.09003 * 109.46857 * 299.99991 * 15 14 12 37 37 H 1.09005 * 109.47392 * 59.99795 * 15 14 12 38 38 H 1.09000 * 109.87818 * 338.85889 * 18 16 15 39 39 H 1.08998 * 109.88222 * 100.02383 * 18 16 15 40 40 H 1.09000 * 109.46884 * 60.00368 * 24 23 22 41 41 H 1.09001 * 109.47105 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.47102 * 300.00231 * 24 23 22 43 43 H 1.08994 * 109.46859 * 60.00137 * 25 23 22 44 44 H 1.09001 * 109.47029 * 180.02562 * 25 23 22 45 45 H 1.08996 * 109.46928 * 300.00113 * 25 23 22 46 46 H 1.08997 * 109.47220 * 59.99620 * 26 23 22 47 47 H 1.09001 * 109.47030 * 179.97438 * 26 23 22 48 48 H 1.08998 * 109.46970 * 299.99565 * 26 23 22 49 49 H 1.08997 * 110.36927 * 142.96906 * 27 19 18 50 50 H 1.09006 * 110.36587 * 265.29025 * 27 19 18 51 51 H 1.08999 * 109.47309 * 172.17658 * 30 28 27 52 52 H 1.09007 * 109.46555 * 292.17244 * 30 28 27 53 53 H 1.08991 * 109.47178 * 52.16681 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 1.4425 -1.4959 1.6792 6 6 3.2450 -0.3573 1.7836 7 7 4.0237 0.5038 1.1659 8 14 3.7819 -1.1023 3.4103 9 1 3.8655 -2.5787 3.2750 10 1 2.7933 -0.7568 4.4632 11 1 5.1135 -0.5630 3.7862 12 6 2.0325 -0.7104 -1.2304 13 8 2.7298 -1.6964 -1.1191 14 7 1.7069 -0.2499 -2.4545 15 6 2.1949 -0.9408 -3.6506 16 6 1.6846 -0.2200 -4.8999 17 1 1.9521 0.8363 -4.8703 18 6 0.1578 -0.3925 -5.0445 19 7 -0.1258 -0.5899 -6.4735 20 6 -1.3441 -0.7973 -7.0112 21 8 -2.3259 -0.8326 -6.2961 22 8 -1.4736 -0.9643 -8.3409 23 6 -2.8156 -1.1827 -8.8503 24 6 -3.6961 0.0183 -8.4992 25 6 -2.7632 -1.3503 -10.3702 26 6 -3.4016 -2.4468 -8.2182 27 6 1.1431 -0.5226 -7.2210 28 6 2.2376 -0.8905 -6.1852 29 1 2.3097 -1.9711 -6.0619 30 6 3.5911 -0.2938 -6.5761 31 1 -0.3633 0.5906 -0.8411 32 1 -0.3632 -1.0236 -0.0911 33 1 -0.3634 0.4329 0.9320 34 1 3.7832 0.8299 0.2845 35 1 1.1495 0.5389 -2.5436 36 1 3.2850 -0.9411 -3.6507 37 1 1.8313 -1.9684 -3.6505 38 1 -0.1721 -1.2630 -4.4774 39 1 -0.3519 0.5015 -4.6854 40 1 -3.2787 0.9189 -8.9496 41 1 -4.7037 -0.1458 -8.8812 42 1 -3.7334 0.1373 -7.4164 43 1 -2.1361 -2.2060 -10.6200 44 1 -3.7708 -1.5138 -10.7527 45 1 -2.3456 -0.4499 -10.8208 46 1 -3.4388 -2.3278 -7.1354 47 1 -4.4092 -2.6105 -8.6003 48 1 -2.7743 -3.3024 -8.4684 49 1 1.1389 -1.2405 -8.0411 50 1 1.3072 0.4863 -7.5998 51 1 4.3042 -0.4492 -5.7664 52 1 3.9558 -0.7818 -7.4800 53 1 3.4777 0.7744 -6.7605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927129107.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:53 Heat of formation + Delta-G solvation = -159.501124 kcal Electronic energy + Delta-G solvation = -30854.987248 eV Core-core repulsion = 26725.108501 eV Total energy + Delta-G solvation = -4129.878746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97318 -40.77859 -39.89393 -37.83623 -36.03709 -35.68695 -35.03746 -33.81220 -32.82315 -31.10333 -28.38728 -28.30919 -27.54905 -27.26799 -26.65258 -24.64615 -23.42649 -22.31231 -21.53816 -20.94003 -20.44375 -19.11488 -18.83164 -17.99576 -17.54535 -17.38791 -16.94814 -16.45664 -16.30637 -15.95553 -15.64002 -15.45659 -15.34592 -14.91849 -14.76087 -14.64047 -14.31184 -14.15692 -13.79867 -13.72092 -13.44688 -13.33528 -13.21591 -13.10983 -12.98931 -12.90646 -12.88122 -12.83310 -12.68218 -12.58806 -12.44630 -12.30690 -12.02511 -11.97811 -11.83984 -11.73059 -11.67956 -11.42038 -11.14558 -10.75942 -10.68434 -10.25440 -9.95994 -9.87318 -8.62503 -6.31709 0.97726 1.51987 1.61114 1.67357 1.79454 2.01368 2.38671 2.60181 2.82058 3.23746 3.34050 3.39986 3.62426 3.73688 3.78155 3.93097 4.05648 4.19456 4.21690 4.34232 4.42156 4.44736 4.47587 4.56444 4.58610 4.59636 4.61602 4.65530 4.71680 4.73767 4.74617 4.80442 4.82573 4.86897 4.87781 4.98781 5.03539 5.05887 5.15654 5.24158 5.26115 5.26191 5.32330 5.39845 5.40042 5.44099 5.63242 5.93418 6.17969 6.33453 6.53629 6.86180 7.18465 7.45480 7.62183 8.77411 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002249 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.006372 B =12445.361975 C =13377.940232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.003 4.003 3 H 0.048 0.952 4 C -0.583 4.583 5 H 0.040 0.960 6 C -0.027 4.027 7 N -0.930 5.930 8 Si 1.111 2.889 9 H -0.284 1.284 10 H -0.261 1.261 11 H -0.282 1.282 12 C 0.505 3.495 13 O -0.582 6.582 14 N -0.731 5.731 15 C 0.135 3.865 16 C -0.092 4.092 17 H 0.114 0.886 18 C 0.132 3.868 19 N -0.606 5.606 20 C 0.660 3.340 21 O -0.594 6.594 22 O -0.362 6.362 23 C 0.124 3.876 24 C -0.179 4.179 25 C -0.133 4.133 26 C -0.181 4.181 27 C 0.111 3.889 28 C -0.089 4.089 29 H 0.085 0.915 30 C -0.138 4.138 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.255 0.745 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.055 0.945 52 H 0.076 0.924 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 1.037 -27.679 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.025 4.025 3 H 0.065 0.935 4 C -0.621 4.621 5 H 0.058 0.942 6 C -0.225 4.225 7 N -0.566 5.566 8 Si 0.933 3.067 9 H -0.210 1.210 10 H -0.186 1.186 11 H -0.208 1.208 12 C 0.294 3.706 13 O -0.460 6.460 14 N -0.386 5.386 15 C 0.011 3.989 16 C -0.111 4.111 17 H 0.132 0.868 18 C 0.010 3.990 19 N -0.346 5.346 20 C 0.416 3.584 21 O -0.486 6.486 22 O -0.277 6.277 23 C 0.087 3.913 24 C -0.236 4.236 25 C -0.190 4.190 26 C -0.238 4.238 27 C -0.010 4.010 28 C -0.109 4.109 29 H 0.103 0.897 30 C -0.196 4.196 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.243 0.757 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.109 0.891 50 H 0.108 0.892 51 H 0.074 0.926 52 H 0.095 0.905 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.815 0.339 -26.354 28.124 hybrid contribution -1.391 0.022 -0.849 1.630 sum -11.206 0.361 -27.203 29.423 Atomic orbital electron populations 1.21558 0.93273 1.00521 1.01864 1.19201 0.95793 0.96651 0.90808 0.93457 1.21935 1.06722 1.21855 1.11540 0.94158 1.27175 0.93209 0.95154 1.06981 1.70919 1.39214 1.31392 1.15106 0.83029 0.76469 0.75277 0.71955 1.21049 1.18617 1.20751 1.22381 0.78437 0.84204 0.85627 1.90513 1.39191 1.28844 1.87469 1.46147 1.54786 1.32621 1.04996 1.21218 0.98793 0.95579 0.83343 1.22488 0.92544 1.02195 0.93882 0.86779 1.21963 0.95975 1.01791 0.79271 1.47195 1.04846 1.73589 1.09020 1.17680 0.82773 0.76384 0.81566 1.90912 1.37398 1.57829 1.62429 1.86307 1.35941 1.84600 1.20822 1.22453 0.77306 0.95886 0.95606 1.22466 1.00825 0.97189 1.03146 1.21870 1.04628 1.03581 0.88953 1.22479 1.02580 0.96457 1.02271 1.22626 0.80292 1.03371 0.94750 1.22381 0.95501 1.00938 0.92088 0.89682 1.21699 0.93924 1.01695 1.02234 0.91278 0.94522 0.92189 0.93545 0.75698 0.92344 0.93325 0.92628 0.90559 0.91738 0.89028 0.92358 0.91181 0.87933 0.90954 0.92480 0.88961 0.92052 0.89114 0.89183 0.92630 0.90488 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 9.03 71.98 0.65 -3.86 16 2 C 0.00 -0.14 2.29 -12.28 -0.03 -0.17 16 3 H 0.05 2.43 6.95 -2.38 -0.02 2.41 16 4 C -0.58 -33.86 7.54 25.60 0.19 -33.67 16 5 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 6 C -0.03 -1.57 5.45 84.65 0.46 -1.11 16 7 N -0.93 -57.87 13.55 21.45 0.29 -57.58 16 8 Si 1.11 52.79 29.91 68.60 2.05 54.84 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.51 24.22 6.96 87.66 0.61 24.83 16 13 O -0.58 -33.69 16.03 -3.05 -0.05 -33.73 16 14 N -0.73 -25.23 5.33 -463.05 -2.47 -27.70 16 15 C 0.13 3.90 5.00 86.38 0.43 4.34 16 16 C -0.09 -1.79 2.45 -9.61 -0.02 -1.81 16 17 H 0.11 1.89 8.04 -2.38 -0.02 1.87 16 18 C 0.13 2.95 6.27 86.73 0.54 3.49 16 19 N -0.61 -13.24 3.33 -941.68 -3.13 -16.37 16 20 C 0.66 16.96 7.93 129.79 1.03 17.99 16 21 O -0.59 -18.58 12.21 19.80 0.24 -18.33 16 22 O -0.36 -7.76 9.42 -55.48 -0.52 -8.28 16 23 C 0.12 2.09 1.13 -10.79 -0.01 2.08 16 24 C -0.18 -3.03 8.37 71.98 0.60 -2.42 16 25 C -0.13 -1.31 8.85 71.98 0.64 -0.68 16 26 C -0.18 -3.22 8.37 71.98 0.60 -2.61 16 27 C 0.11 1.67 6.41 86.93 0.56 2.23 16 28 C -0.09 -1.38 3.10 -9.33 -0.03 -1.41 16 29 H 0.08 1.45 8.05 -2.39 -0.02 1.43 16 30 C -0.14 -1.71 9.31 71.98 0.67 -1.04 16 31 H 0.07 2.15 7.71 -2.39 -0.02 2.13 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.25 15.83 6.74 -92.70 -0.62 15.20 16 35 H 0.41 11.43 7.92 -92.71 -0.73 10.69 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.56 8.00 -2.38 -0.02 1.54 16 38 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.23 8.04 -2.39 -0.02 1.21 16 50 H 0.09 1.08 7.99 -2.38 -0.02 1.06 16 51 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 53 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 Total: -1.00 -80.50 420.22 3.60 -76.90 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.29 Total: 24.09 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.90 Total: 6.17 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -5.31 Total: -101.65 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -0.33 Total: -60.35 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.84 kcal Total: -80.50 3.60 -76.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927129107.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.600 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds